FvH4_5g36480

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000222
Physical Location & Seq
Forward (+)
26751903 .. 26752193
291 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36480.t1

Sequence Viewer

Length: 291 bp
ATGGCCGAGGAGATTCCGGTACCAAACAAGAAGCTCCACGGCAAGGTGGCCATCATCACCGGCGCCGCTAGCGGCATCAGTGAAGTCACGGCGGGCCACTTGGCTGACCACGGAGCTCGGATGGTGGTGATCGCCGACGTCCAAGACACCAAGGGCCGAGAAGTGGCCACAACAATTGGCTCCGATCGCTGTGTTAAGATAATAGAGCTCAGTGAGCTAGATGAAAATGGTGAGCTCAGTGAGCTAAGCAAAAATGGTGACAGTTGTCTTGGTAAAAACTCATCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

97

Amino Acids

9.98

Weight (kDa)

5.06

Isoelectric Point (pI)

23.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 15 - 62 1.1e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
Acc65I GGTACC 1 cut(s) 19
AccB1I GGYRCC 2 cut(s) 19, 62
AciI CCGC 3 cut(s) 66, 72, 92
AcoI YGGCCR 3 cut(s) 3, 48, 165
AcyI GRCGYC 2 cut(s) 63, 138
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 2 cut(s) 43, 163
AluBI AGCT 6 cut(s) 34, 116, 208, 217, 235, 244
AluI AGCT 6 cut(s) 34, 116, 208, 217, 235, 244
Alw21I GWGCWC 3 cut(s) 118, 210, 237
AoxI GGCC 5 cut(s) 3, 48, 94, 154, 165
Asp718I GGTACC 1 cut(s) 19
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 94, 154
AsuHPI GGTGA 4 cut(s) 49, 139, 242, 269
AsuNHI GCTAGC 1 cut(s) 68
BalI TGGCCA 2 cut(s) 50, 167
BanI GGYRCC 2 cut(s) 19, 62
BanII GRGCYC 3 cut(s) 118, 210, 237
Bbv12I GWGCWC 3 cut(s) 118, 210, 237
BccI CCATC 2 cut(s) 59, 115
BceAI ACGGC 2 cut(s) 55, 105
BfaI CTAG 2 cut(s) 69, 218
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 2 cut(s) 66, 73
BlpI GCTNAGC 1 cut(s) 245
BlsI GCNGC 2 cut(s) 67, 74
BmgT120I GGNCC 2 cut(s) 94, 154
BmiI GGNNCC 3 cut(s) 21, 64, 181
BmsI GCATC 1 cut(s) 84
BmtI GCTAGC 1 cut(s) 72
BoxI GACNNNNGTC 1 cut(s) 264
Bpu1102I GCTNAGC 1 cut(s) 245
BsaHI GRCGYC 2 cut(s) 63, 138
BsaJI CCNNGG 4 cut(s) 6, 37, 109, 150
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 163
Bse118I RCCGGY 1 cut(s) 59
BseDI CCNNGG 4 cut(s) 6, 37, 109, 150
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 43, 163
BseMII CTCAG 2 cut(s) 223, 250
BseRI GAGGAG 1 cut(s) 23
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 5 cut(s) 5, 50, 96, 156, 167
BshNI GGYRCC 2 cut(s) 19, 62
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 3 cut(s) 118, 210, 237
BsiSI CCGG 2 cut(s) 17, 60
BslI CCNNNNNNNGG 2 cut(s) 43, 163
BsnI GGCC 5 cut(s) 5, 50, 96, 156, 167
Bsp1286I GDGCHC 3 cut(s) 118, 210, 237
Bsp143I GATC 2 cut(s) 129, 184
Bsp1720I GCTNAGC 1 cut(s) 245
BspACI CCGC 3 cut(s) 66, 72, 92
BspANI GGCC 5 cut(s) 5, 50, 96, 156, 167
BspCNI CTCAG 2 cut(s) 222, 249
BspLI GGNNCC 3 cut(s) 21, 64, 181
BspOI GCTAGC 1 cut(s) 72
BspT107I GGYRCC 2 cut(s) 19, 62
BsrFI RCCGGY 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 4 cut(s) 6, 37, 109, 150
BssMI GATC 2 cut(s) 129, 184
BssNI GRCGYC 2 cut(s) 63, 138
BssT1I CCWWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 263
BstACI GRCGYC 2 cut(s) 63, 138
BstC8I GCNNGC 2 cut(s) 70, 94
BstDEI CTNAG 3 cut(s) 209, 236, 245
BstDSI CCRYGG 2 cut(s) 37, 109
BstF5I GGATG 1 cut(s) 126
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 2 cut(s) 132, 187
BstMBI GATC 2 cut(s) 129, 184
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 4 cut(s) 69, 186, 214, 241
BstPAI GACNNNNGTC 1 cut(s) 264
BsuRI GGCC 5 cut(s) 5, 50, 96, 156, 167
BtgI CCRYGG 2 cut(s) 37, 109
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 3 cut(s) 85, 217, 244
Cac8I GCNNGC 2 cut(s) 70, 94
CfoI GCGC 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 94, 154
Csp6I GTAC 1 cut(s) 20
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 3 cut(s) 209, 236, 245
DinI GGCGCC 1 cut(s) 64
DpnI GATC 2 cut(s) 131, 186
DpnII GATC 2 cut(s) 129, 184
EaeI YGGCCR 3 cut(s) 3, 48, 165
Ecl136II GAGCTC 3 cut(s) 116, 208, 235
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 3 cut(s) 118, 210, 237
Eco53kI GAGCTC 3 cut(s) 116, 208, 235
EcoICRI GAGCTC 3 cut(s) 116, 208, 235
EcoT14I CCWWGG 1 cut(s) 150
EcoT38I GRGCYC 3 cut(s) 118, 210, 237
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 150
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 2 cut(s) 66, 73
FokI GGATG 1 cut(s) 133
FriOI GRGCYC 3 cut(s) 118, 210, 237
Fsp4HI GCNGC 2 cut(s) 66, 73
FspBI CTAG 2 cut(s) 69, 218
GlaI GCGC 1 cut(s) 64
GluI GCNGC 2 cut(s) 66, 73
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 5 cut(s) 5, 50, 96, 156, 167
HapII CCGG 2 cut(s) 17, 60
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 2 cut(s) 63, 138
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 1 cut(s) 13
HpaII CCGG 2 cut(s) 17, 60
HphI GGTGA 4 cut(s) 49, 139, 242, 269
Hpy188I TCNGA 2 cut(s) 120, 184
Hpy99I CGWCG 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 4 cut(s) 69, 186, 214, 241
HpyF3I CTNAG 3 cut(s) 209, 236, 245
HpySE526I ACGT 1 cut(s) 138
Hsp92I GRCGYC 2 cut(s) 63, 138
HspAI GCGC 1 cut(s) 63
KasI GGCGCC 1 cut(s) 62
KpnI GGTACC 1 cut(s) 23
Kzo9I GATC 2 cut(s) 129, 184
LmnI GCTCC 3 cut(s) 39, 113, 185
LpnPI CCDG 2 cut(s) 30, 73
LweI GCATC 1 cut(s) 84
MaeI CTAG 2 cut(s) 69, 218
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 85, 257
MalI GATC 2 cut(s) 131, 186
MboI GATC 2 cut(s) 129, 184
MfeI CAATTG 1 cut(s) 174
MhlI GDGCHC 3 cut(s) 118, 210, 237
MlsI TGGCCA 2 cut(s) 50, 167
MluCI AATT 1 cut(s) 174
MluNI TGGCCA 2 cut(s) 50, 167
Mly113I GGCGCC 1 cut(s) 63
Mox20I TGGCCA 2 cut(s) 50, 167
MscI TGGCCA 2 cut(s) 50, 167
MseI TTAA 1 cut(s) 195
Msp20I TGGCCA 2 cut(s) 50, 167
MspI CCGG 2 cut(s) 17, 60
MunI CAATTG 1 cut(s) 174
MwoI GCNNNNNNNGC 4 cut(s) 69, 186, 214, 241
NarI GGCGCC 1 cut(s) 63
NdeII GATC 2 cut(s) 129, 184
NheI GCTAGC 1 cut(s) 68
NlaIV GGNNCC 3 cut(s) 21, 64, 181
NmeAIII GCCGAG 2 cut(s) 31, 182
NmuCI GTSAC 2 cut(s) 85, 257
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 2 cut(s) 67, 74
Ple19I CGATCG 1 cut(s) 187
PluTI GGCGCC 1 cut(s) 66
PshAI GACNNNNGTC 1 cut(s) 264
Psp124BI GAGCTC 3 cut(s) 118, 210, 237
PspN4I GGNNCC 3 cut(s) 21, 64, 181
PspPI GGNCC 2 cut(s) 94, 154
PvuI CGATCG 1 cut(s) 187
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
SacI GAGCTC 3 cut(s) 118, 210, 237
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 66, 73
Sau3AI GATC 2 cut(s) 129, 184
Sau96I GGNCC 2 cut(s) 94, 154
SduI GDGCHC 3 cut(s) 118, 210, 237
SetI ASST 8 cut(s) 36, 48, 118, 141, 210, 219, 237, 246
SfaNI GCATC 1 cut(s) 84
SfoI GGCGCC 1 cut(s) 64
SgrAI CRCCGGYG 1 cut(s) 59
Sse9I AATT 1 cut(s) 174
SsiI CCGC 3 cut(s) 66, 72, 92
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 2 cut(s) 69, 218
SstI GAGCTC 3 cut(s) 118, 210, 237
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 1 cut(s) 141
TasI AATT 1 cut(s) 174
TauI GCSGC 2 cut(s) 68, 75
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 3 cut(s) 85, 217, 244
TseFI GTSAC 2 cut(s) 85, 257
Tsp45I GTSAC 2 cut(s) 85, 257
TspDTI ATGAA 1 cut(s) 237
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 3 cut(s) 85, 217, 244
XspI CTAG 2 cut(s) 69, 218
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.