Rw7G038750

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000222
Physical Location & Seq
Forward (+)
59300139 .. 59301084
946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G038750.1

Sequence Viewer

Length: 771 bp
ATGACTGAGGCCATACCATTACCAGTGCAGAAGCTCCACGGCAAAGTGGCTATCGTCACTGGCGCAGCCAGCGGCATCGGAGCAGCCACGGCTCGCCTCATCGCAAATCACGGCGCTCTCGCTGTCGTGATCGCTGACGTGCAAGACGCCAAGGGCCGAGAAGTGGTCGCATCGATCGGCTCCAACCGCTGCACCTACGTCCACTGCGACGTCGCCGACGAGGACCAGGTCAAATACTTAGTTGACTCTACTGTCAAGATGTACGGCCGCCTAGACGTGATGTACAGCAACGCGGGAATAGCCTCCCCGTCGCGGCAAACTGTGCTGGAGCTGGACCTGTCCTGGTTCGATAAGGTGATGCACGCGGCTCGCGCGATGGTGGAGAAAGGAGTCAAAGGCAGCATAGTGTGCACAGCGAGCATCGTGGCGGAATGCGGGACAGAGGGCGTGACGGACTACACGATGTCGAAGCACGCAGTGCTGGGGCTGATGAGGTCGGCGAGTGTGCAGCTGGTGAAGCATGGGGTGCGCGTGAACTGCGTGTCGCCGGGTCTGGTGGCGACGCCGATGTTCATCGCCGATAATGGCGGCGGTTTATACAGGAAGCCAATATGGGCCGGTGAAGGAGAAAACCTGGCGGATGCAGTGGTGTTCTTGGCCTCTGAGGACTCGGCGTTGATCACTGGCCAGAATTTGATTGTTGATGGTGGATTTGGAGCCCAAGCCGTATCAGTATTAGGACAAAACCGAGATTCTATAGCTATGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

256

Amino Acids

26.73

Weight (kDa)

6.06

Isoelectric Point (pI)

22.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 15 - 191 4.2e-38 short chain dehydrogenase
KR PF08659 18 - 163 1.9e-07 KR domain
adh_short_C2 PF13561 21 - 238 6.6e-47 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AatII GACGTC 1 cut(s) 213
AccII CGCG 6 cut(s) 293, 313, 365, 372, 374, 531
AcoI YGGCCR 2 cut(s) 265, 685
AcsI RAATTY 1 cut(s) 691
AcyI GRCGYC 3 cut(s) 147, 210, 563
AdeI CACNNNGTG 1 cut(s) 478
AfaI GTAC 2 cut(s) 263, 284
AfiI CCNNNNNNNGG 2 cut(s) 163, 312
AjiI CACGTC 2 cut(s) 139, 277
AjnI CCWGG 3 cut(s) 225, 341, 633
AluBI AGCT 4 cut(s) 34, 331, 511, 761
AluI AGCT 4 cut(s) 34, 331, 511, 761
Alw21I GWGCWC 1 cut(s) 413
Alw44I GTGCAC 1 cut(s) 409
AoxI GGCC 6 cut(s) 9, 154, 265, 615, 657, 685
ApaLI GTGCAC 1 cut(s) 409
ApeKI GCWGC 5 cut(s) 65, 83, 189, 399, 508
ApoI RAATTY 1 cut(s) 691
AspLEI GCGC 4 cut(s) 65, 116, 374, 531
AspS9I GGNCC 4 cut(s) 154, 223, 334, 615
AsuC2I CCSGG 1 cut(s) 549
AsuHPI GGTGA 3 cut(s) 367, 526, 632
AvaII GGWCC 2 cut(s) 223, 334
BaeGI GKGCMC 1 cut(s) 413
BalI TGGCCA 1 cut(s) 687
BanII GRGCYC 1 cut(s) 721
Bbv12I GWGCWC 1 cut(s) 413
BbvI GCAGC 5 cut(s) 77, 95, 176, 411, 520
BccI CCATC 2 cut(s) 370, 698
BceAI ACGGC 5 cut(s) 55, 105, 127, 280, 710
BcgI CGANNNNNNTGC 2 cut(s) 350, 384
BciT130I CCWGG 3 cut(s) 227, 343, 635
BclI TGATCA 1 cut(s) 678
BcnI CCSGG 1 cut(s) 549
BfaI CTAG 1 cut(s) 272
BfmI CTRYAG 1 cut(s) 756
BfoI RGCGCY 1 cut(s) 117
Bme1390I CCNGG 4 cut(s) 227, 343, 549, 635
Bme18I GGWCC 2 cut(s) 223, 334
BmgBI CACGTC 2 cut(s) 139, 277
BmgT120I GGNCC 4 cut(s) 154, 223, 334, 615
BmiI GGNNCC 2 cut(s) 181, 718
BmrFI CCNGG 4 cut(s) 227, 343, 549, 635
BmsI GCATC 5 cut(s) 84, 179, 348, 429, 631
BpmI CTGGAG 1 cut(s) 347
BpuMI CCSGG 1 cut(s) 549
Bsa29I ATCGAT 1 cut(s) 173
BsaBI GATNNNNATC 1 cut(s) 572
BsaHI GRCGYC 3 cut(s) 147, 210, 563
BsaJI CCNNGG 3 cut(s) 37, 87, 150
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 312
Bse118I RCCGGY 1 cut(s) 617
Bse1I ACTGG 3 cut(s) 23, 64, 688
Bse8I GATNNNNATC 1 cut(s) 572
BseBI CCWGG 3 cut(s) 227, 343, 635
BseCI ATCGAT 1 cut(s) 173
BseDI CCNNGG 3 cut(s) 37, 87, 150
BseGI GGATG 1 cut(s) 646
BseJI GATNNNNATC 1 cut(s) 572
BseLI CCNNNNNNNGG 2 cut(s) 163, 312
BseMII CTCAG 1 cut(s) 654
BseNI ACTGG 3 cut(s) 23, 64, 688
BseSI GKGCMC 1 cut(s) 413
BseX3I CGGCCG 1 cut(s) 265
BseXI GCAGC 5 cut(s) 77, 95, 176, 411, 520
BseYI CCCAGC 1 cut(s) 481
BsgI GTGCAG 3 cut(s) 47, 175, 527
Bsh1236I CGCG 6 cut(s) 293, 313, 365, 372, 374, 531
Bsh1285I CGRYCG 2 cut(s) 177, 268
BshFI GGCC 6 cut(s) 11, 156, 267, 617, 659, 687
BshVI ATCGAT 1 cut(s) 173
BsiEI CGRYCG 2 cut(s) 177, 268
BsiHKAI GWGCWC 1 cut(s) 413
BsiSI CCGG 2 cut(s) 548, 618
BslFI GGGAC 1 cut(s) 451
BslI CCNNNNNNNGG 2 cut(s) 163, 312
BsmFI GGGAC 1 cut(s) 451
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 6 cut(s) 11, 156, 267, 617, 659, 687
Bsp1286I GDGCHC 2 cut(s) 413, 721
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 3 cut(s) 129, 174, 678
BspANI GGCC 6 cut(s) 11, 156, 267, 617, 659, 687
BspCNI CTCAG 1 cut(s) 655
BspDI ATCGAT 1 cut(s) 173
BspFNI CGCG 6 cut(s) 293, 313, 365, 372, 374, 531
BspLI GGNNCC 2 cut(s) 181, 718
BsrFI RCCGGY 1 cut(s) 617
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 3 cut(s) 23, 64, 688
BssAI RCCGGY 1 cut(s) 617
BssECI CCNNGG 3 cut(s) 37, 87, 150
BssMI GATC 3 cut(s) 129, 174, 678
BssNI GRCGYC 3 cut(s) 147, 210, 563
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 3 cut(s) 227, 343, 635
Bst4CI ACNGT 2 cut(s) 253, 322
BstACI GRCGYC 3 cut(s) 147, 210, 563
BstAPI GCANNNNNTGC 4 cut(s) 322, 408, 478, 526
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 6 cut(s) 70, 94, 363, 370, 418, 474
BstDEI CTNAG 3 cut(s) 6, 238, 663
BstDSI CCRYGG 2 cut(s) 37, 87
BstF5I GGATG 1 cut(s) 646
BstFNI CGCG 6 cut(s) 293, 313, 365, 372, 374, 531
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 4 cut(s) 65, 116, 374, 531
BstKTI GATC 3 cut(s) 132, 177, 681
BstMBI GATC 3 cut(s) 129, 174, 678
BstMCI CGRYCG 2 cut(s) 177, 268
BstNI CCWGG 3 cut(s) 227, 343, 635
BstSCI CCNGG 4 cut(s) 225, 341, 547, 633
BstSFI CTRYAG 1 cut(s) 756
BstSLI GKGCMC 1 cut(s) 413
BstUI CGCG 6 cut(s) 293, 313, 365, 372, 374, 531
BstV1I GCAGC 5 cut(s) 77, 95, 176, 411, 520
BstZI CGGCCG 1 cut(s) 265
Bsu15I ATCGAT 1 cut(s) 173
BsuRI GGCC 6 cut(s) 11, 156, 267, 617, 659, 687
BsuTUI ATCGAT 1 cut(s) 173
BtgI CCRYGG 2 cut(s) 37, 87
BtgZI GCGATG 3 cut(s) 85, 389, 559
BtrI CACGTC 2 cut(s) 139, 277
BtsCI GGATG 1 cut(s) 646
BtsI GCAGTG 3 cut(s) 202, 483, 651
BtsIMutI CAGTG 6 cut(s) 30, 57, 202, 483, 651, 681
Cac8I GCNNGC 6 cut(s) 70, 94, 363, 370, 418, 474
CfoI GCGC 4 cut(s) 65, 116, 374, 531
Cfr10I RCCGGY 1 cut(s) 617
Cfr13I GGNCC 4 cut(s) 154, 223, 334, 615
ClaI ATCGAT 1 cut(s) 173
CseI GACGC 2 cut(s) 155, 571
CsiI ACCWGGT 1 cut(s) 225
Csp6I GTAC 2 cut(s) 262, 283
CviAII CATG 1 cut(s) 521
CviQI GTAC 2 cut(s) 262, 283
DdeI CTNAG 3 cut(s) 6, 238, 663
DpnI GATC 3 cut(s) 131, 176, 680
DpnII GATC 3 cut(s) 129, 174, 678
DraIII CACNNNGTG 1 cut(s) 478
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 2 cut(s) 265, 685
EagI CGGCCG 1 cut(s) 265
EciI GGCGGA 2 cut(s) 443, 653
EclXI CGGCCG 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 721
Eco47I GGWCC 2 cut(s) 223, 334
Eco52I CGGCCG 1 cut(s) 265
EcoRII CCWGG 3 cut(s) 225, 341, 633
EcoT14I CCWWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 721
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 1 cut(s) 524
FaiI YATR 7 cut(s) 14, 404, 522, 598, 613, 758, 764
FaqI GGGAC 1 cut(s) 451
FatI CATG 1 cut(s) 520
FauI CCCGC 2 cut(s) 286, 428
FbaI TGATCA 1 cut(s) 678
FokI GGATG 1 cut(s) 653
FriOI GRGCYC 1 cut(s) 721
FspBI CTAG 1 cut(s) 272
GlaI GCGC 4 cut(s) 64, 115, 373, 530
GsaI CCCAGC 1 cut(s) 485
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 6 cut(s) 11, 156, 267, 617, 659, 687
HapII CCGG 2 cut(s) 548, 618
HgaI GACGC 2 cut(s) 155, 571
HhaI GCGC 4 cut(s) 65, 116, 374, 531
Hin1I GRCGYC 3 cut(s) 147, 210, 563
Hin1II CATG 1 cut(s) 524
Hin6I GCGC 4 cut(s) 63, 114, 372, 529
HinP1I GCGC 4 cut(s) 63, 114, 372, 529
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 4 cut(s) 245, 390, 668, 752
HpaII CCGG 2 cut(s) 548, 618
HphI GGTGA 3 cut(s) 367, 526, 632
Hpy166II GTNNAC 4 cut(s) 202, 244, 411, 535
Hpy188I TCNGA 2 cut(s) 80, 664
Hpy188III TCNNGA 2 cut(s) 127, 256
Hpy8I GTNNAC 4 cut(s) 202, 244, 411, 535
Hpy99I CGWCG 5 cut(s) 212, 215, 221, 313, 565
HpyAV CCTTC 1 cut(s) 617
HpyCH4III ACNGT 2 cut(s) 253, 322
HpyCH4IV ACGT 4 cut(s) 138, 198, 210, 276
HpyCH4V TGCA 7 cut(s) 28, 142, 192, 361, 411, 508, 644
HpyF3I CTNAG 3 cut(s) 6, 238, 663
HpySE526I ACGT 4 cut(s) 138, 198, 210, 276
Hsp92I GRCGYC 3 cut(s) 147, 210, 563
Hsp92II CATG 1 cut(s) 524
HspAI GCGC 4 cut(s) 63, 114, 372, 529
Ksp22I TGATCA 1 cut(s) 678
Kzo9I GATC 3 cut(s) 129, 174, 678
LmnI GCTCC 5 cut(s) 39, 80, 185, 328, 716
Lsp1109I GCAGC 5 cut(s) 77, 95, 176, 411, 520
LweI GCATC 5 cut(s) 84, 179, 348, 429, 631
MabI ACCWGGT 1 cut(s) 225
MaeI CTAG 1 cut(s) 272
MaeII ACGT 4 cut(s) 138, 198, 210, 276
MaeIII GTNAC 2 cut(s) 55, 448
MalI GATC 3 cut(s) 131, 176, 680
MboI GATC 3 cut(s) 129, 174, 678
MhlI GDGCHC 2 cut(s) 413, 721
MlsI TGGCCA 1 cut(s) 687
MluCI AATT 1 cut(s) 691
MluNI TGGCCA 1 cut(s) 687
MlyI GAGTC 3 cut(s) 239, 399, 662
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 7 cut(s) 107, 214, 313, 436, 486, 658, 670
Mox20I TGGCCA 1 cut(s) 687
MscI TGGCCA 1 cut(s) 687
Msp20I TGGCCA 1 cut(s) 687
MspA1I CMGCKG 3 cut(s) 72, 189, 511
MspI CCGG 2 cut(s) 548, 618
MspR9I CCNGG 4 cut(s) 227, 343, 549, 635
Mva1269I GAATGC 1 cut(s) 437
MvaI CCWGG 3 cut(s) 227, 343, 635
MvnI CGCG 6 cut(s) 293, 313, 365, 372, 374, 531
NciI CCSGG 1 cut(s) 549
NdeII GATC 3 cut(s) 129, 174, 678
NlaIII CATG 1 cut(s) 524
NlaIV GGNNCC 2 cut(s) 181, 718
NmeAIII GCCGAG 2 cut(s) 182, 650
NmuCI GTSAC 2 cut(s) 55, 448
PcsI WCGNNNNNNNCGW 3 cut(s) 204, 216, 458
PctI GAATGC 1 cut(s) 437
PfeI GAWTC 1 cut(s) 752
PflFI GACNNNGTC 1 cut(s) 227
Ple19I CGATCG 1 cut(s) 177
PleI GAGTC 3 cut(s) 239, 398, 662
PpsI GAGTC 3 cut(s) 239, 398, 662
Psp6I CCWGG 3 cut(s) 225, 341, 633
PspFI CCCAGC 1 cut(s) 481
PspGI CCWGG 3 cut(s) 225, 341, 633
PspN4I GGNNCC 2 cut(s) 181, 718
PspPI GGNCC 4 cut(s) 154, 223, 334, 615
PsyI GACNNNGTC 1 cut(s) 227
PvuI CGATCG 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 511
RsaI GTAC 2 cut(s) 263, 284
RsaNI GTAC 2 cut(s) 262, 283
Sau3AI GATC 3 cut(s) 129, 174, 678
Sau96I GGNCC 4 cut(s) 154, 223, 334, 615
SchI GAGTC 3 cut(s) 239, 399, 662
ScrFI CCNGG 4 cut(s) 227, 343, 549, 635
SduI GDGCHC 2 cut(s) 413, 721
SexAI ACCWGGT 1 cut(s) 225
SfaNI GCATC 5 cut(s) 84, 179, 348, 429, 631
SfcI CTRYAG 1 cut(s) 756
SinI GGWCC 2 cut(s) 223, 334
Sse9I AATT 1 cut(s) 691
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 4 cut(s) 225, 341, 547, 633
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 253, 322
TaiI ACGT 4 cut(s) 141, 201, 213, 279
TaqI TCGA 3 cut(s) 173, 348, 467
TasI AATT 1 cut(s) 691
TatI WGTACW 1 cut(s) 282
TauI GCSGC 5 cut(s) 75, 270, 316, 368, 591
TfiI GAWTC 1 cut(s) 752
TscAI CASTG 6 cut(s) 30, 64, 209, 483, 651, 688
TseFI GTSAC 2 cut(s) 55, 448
TseI GCWGC 5 cut(s) 65, 83, 189, 399, 508
Tsp45I GTSAC 2 cut(s) 55, 448
TspDTI ATGAA 1 cut(s) 562
TspGWI ACGGA 1 cut(s) 467
TspRI CASTG 6 cut(s) 30, 64, 209, 483, 651, 688
Tth111I GACNNNGTC 1 cut(s) 227
VneI GTGCAC 1 cut(s) 409
VpaK11BI GGWCC 2 cut(s) 223, 334
XapI RAATTY 1 cut(s) 691
XspI CTAG 1 cut(s) 272
ZraI GACGTC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.