RchiOBHm_Chr7g0242201

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000222
Physical Location & Seq
Forward (+)
68357545 .. 68357757
213 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21707

Sequence Viewer

Length: 213 bp
ATGGTGAGGGAGACATTTAAGCTTGGGGCGAAAGAGCTAAAGGAGATGATGGCAGCAGTTTATTCCGAAAGCAGAGATGGGCTGCTGAAGGAGAAACATGTGGCGGATGCGGTGGTGTTTTTGGCGTCGCAGGACTCGGCGTTCGTCACCGGCCATAATTTCGTGGTTGATGGCGGATTTGGCACCAAGTCCTTATCAGTACTCAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

70

Amino Acids

7.59

Weight (kDa)

6.72

Isoelectric Point (pI)

15.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 12 - 60 8.2e-09 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 182
AciI CCGC 3 cut(s) 104, 110, 174
AcoI YGGCCR 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 125
AfaI GTAC 1 cut(s) 201
AflIII ACRYGT 1 cut(s) 97
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 2 cut(s) 22, 37
AluI AGCT 2 cut(s) 22, 37
Alw26I GTCTC 1 cut(s) 5
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 2 cut(s) 53, 82
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AsuHPI GGTGA 2 cut(s) 16, 139
BanI GGYRCC 1 cut(s) 182
BbvI GCAGC 2 cut(s) 65, 69
BccI CCATC 3 cut(s) 43, 71, 164
BcoDI GTCTC 1 cut(s) 5
BisI GCNGC 2 cut(s) 54, 83
BlsI GCNGC 2 cut(s) 55, 84
BmcAI AGTACT 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 184
BmsI GCATC 1 cut(s) 97
BsaHI GRCGYC 1 cut(s) 125
Bse118I RCCGGY 1 cut(s) 149
BseGI GGATG 1 cut(s) 112
BseXI GCAGC 2 cut(s) 65, 69
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 5
BsnI GGCC 1 cut(s) 153
BspACI CCGC 3 cut(s) 104, 110, 174
BspANI GGCC 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 184
BspT107I GGYRCC 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 149
BssNI GRCGYC 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 125
BstF5I GGATG 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 5
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 101
BstV1I GCAGC 2 cut(s) 65, 69
BsuRI GGCC 1 cut(s) 153
BtsCI GGATG 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 149
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 200
CviAII CATG 2 cut(s) 98, 210
CviJI RGCY 4 cut(s) 22, 37, 82, 153
CviKI_1 RGCY 4 cut(s) 22, 37, 82, 153
CviQI GTAC 1 cut(s) 200
EaeI YGGCCR 1 cut(s) 151
EciI GGCGGA 2 cut(s) 119, 189
Eco57I CTGAAG 1 cut(s) 107
FaeI CATG 2 cut(s) 101, 213
FaiI YATR 3 cut(s) 99, 156, 211
FatI CATG 2 cut(s) 97, 209
Fnu4HI GCNGC 2 cut(s) 54, 83
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 2 cut(s) 54, 83
GluI GCNGC 2 cut(s) 54, 83
HaeIII GGCC 1 cut(s) 153
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 114
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 2 cut(s) 101, 213
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 1 cut(s) 134
HpaII CCGG 1 cut(s) 150
HphI GGTGA 2 cut(s) 16, 139
Hpy188I TCNGA 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 2 cut(s) 101, 213
LpnPI CCDG 2 cut(s) 116, 163
Lsp1109I GCAGC 2 cut(s) 65, 69
LweI GCATC 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 145
MluCI AATT 1 cut(s) 157
MlyI GAGTC 1 cut(s) 128
MseI TTAA 1 cut(s) 18
MspI CCGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 180
NlaIII CATG 2 cut(s) 101, 213
NlaIV GGNNCC 1 cut(s) 184
NmeAIII GCCGAG 1 cut(s) 116
NmuCI GTSAC 1 cut(s) 145
NspI RCATGY 1 cut(s) 101
PciI ACATGT 1 cut(s) 97
PkrI GCNGC 2 cut(s) 55, 84
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PscI ACATGT 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 184
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 2 cut(s) 54, 83
ScaI AGTACT 1 cut(s) 201
SchI GAGTC 1 cut(s) 128
SetI ASST 2 cut(s) 24, 39
SfaNI GCATC 1 cut(s) 97
SgeI CNNG 7 cut(s) 35, 110, 143, 148, 162, 175, 199
Sse9I AATT 1 cut(s) 157
SsiI CCGC 3 cut(s) 104, 110, 174
TasI AATT 1 cut(s) 157
TatI WGTACW 1 cut(s) 199
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 2 cut(s) 53, 82
Tsp45I GTSAC 1 cut(s) 145
XceI RCATGY 1 cut(s) 101
ZrmI AGTACT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.