Rh6BG486700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000222
Physical Location & Seq
Forward (+)
69136483 .. 69136884
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG486700.1

Sequence Viewer

Length: 402 bp
ATGAGAGTGGACCTAGTGTCCGGGGTAGAATGTTCTTGGAATAATCTTAGTCGGAGGGGTAGCTGTTTTGGTGGTTTCGCTGTTGAACAGGAGAGGAGGCTTTACCGAGGCAGATCGGAGCAGATTCGATGGTTGGTGGGTGGGGTGGGATCAATCTCACAGCACGCGGTTGGCGGGCATCCGGAGGTGACAGCGGTGGGTTGTGCGATGCAAAAACCCGAGGGATCCAGATCGGATCGGGGAGACCCGAGTTGGTTTGGGTTGTTTGGGGTAGCGCTGTGGATTGGGGGTGGCGGCGATGCGTGCCAGTGTGTTGGGGAGAGCGGCGAGCTGGGGGGATGGCCGGAGGCTGCTCGGCGCGGTGGGTTGGCCGTTTTGTTTTGCAGATCGGAGGCGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.16

Weight (kDa)

7.62

Isoelectric Point (pI)

62.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 324
AccII CGCG 2 cut(s) 167, 360
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 6 cut(s) 167, 174, 194, 294, 324, 360
AclWI GGATC 4 cut(s) 157, 219, 232, 243
AcoI YGGCCR 2 cut(s) 341, 369
AfeI AGCGCT 1 cut(s) 276
AgsI TTSAA 1 cut(s) 86
AhdI GACNNNNNGTC 1 cut(s) 16
AluBI AGCT 2 cut(s) 63, 331
AluI AGCT 2 cut(s) 63, 331
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 4 cut(s) 157, 219, 232, 243
Ama87I CYCGRG 2 cut(s) 218, 247
Aor13HI TCCGGA 1 cut(s) 181
Aor51HI AGCGCT 1 cut(s) 276
AoxI GGCC 2 cut(s) 341, 369
ApeKI GCWGC 1 cut(s) 350
AspLEI GCGC 2 cut(s) 277, 360
AspS9I GGNCC 1 cut(s) 10
AsuC2I CCSGG 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 199
AvaI CYCGRG 2 cut(s) 218, 247
AvaII GGWCC 1 cut(s) 10
BamHI GGATCC 1 cut(s) 224
BbvI GCAGC 1 cut(s) 337
BccI CCATC 2 cut(s) 123, 333
BceAI ACGGC 1 cut(s) 356
BcnI CCSGG 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 278
BisI GCNGC 3 cut(s) 295, 325, 351
BlsI GCNGC 3 cut(s) 296, 326, 352
Bme1390I CCNGG 1 cut(s) 22
Bme18I GGWCC 1 cut(s) 10
BmeRI GACNNNNNGTC 1 cut(s) 16
BmeT110I CYCGRG 2 cut(s) 218, 247
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 22
BmsI GCATC 3 cut(s) 187, 198, 289
BpuMI CCSGG 1 cut(s) 22
BsaBI GATNNNNATC 1 cut(s) 229
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 21, 106, 219
BsaWI WCCGGW 1 cut(s) 181
BsaXI ACNNNNNCTCC 1 cut(s) 383
Bse1I ACTGG 1 cut(s) 307
Bse8I GATNNNNATC 1 cut(s) 229
BseAI TCCGGA 1 cut(s) 181
BseDI CCNNGG 3 cut(s) 21, 106, 219
BseGI GGATG 2 cut(s) 178, 344
BseJI GATNNNNATC 1 cut(s) 229
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 337
BseYI CCCAGC 1 cut(s) 331
Bsh1236I CGCG 2 cut(s) 167, 360
BshFI GGCC 2 cut(s) 343, 371
BsiHKCI CYCGRG 2 cut(s) 218, 247
BsiSI CCGG 3 cut(s) 21, 182, 344
BsmAI GTCTC 1 cut(s) 237
BsnI GGCC 2 cut(s) 343, 371
Bso31I GGTCTC 1 cut(s) 237
BsoBI CYCGRG 2 cut(s) 218, 247
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 6 cut(s) 113, 149, 224, 230, 235, 386
BspACI CCGC 6 cut(s) 167, 174, 194, 294, 324, 360
BspANI GGCC 2 cut(s) 343, 371
BspEI TCCGGA 1 cut(s) 181
BspFNI CGCG 2 cut(s) 167, 360
BspLI GGNNCC 1 cut(s) 226
BspPI GGATC 4 cut(s) 157, 219, 232, 243
BspTNI GGTCTC 1 cut(s) 237
BsrBI CCGCTC 1 cut(s) 324
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 3 cut(s) 21, 106, 219
BssMI GATC 6 cut(s) 113, 149, 224, 230, 235, 386
BstC8I GCNNGC 4 cut(s) 165, 176, 304, 329
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 178, 344
BstFNI CGCG 2 cut(s) 167, 360
BstH2I RGCGCY 1 cut(s) 278
BstHHI GCGC 2 cut(s) 277, 360
BstKTI GATC 6 cut(s) 116, 152, 227, 233, 238, 389
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 6 cut(s) 113, 149, 224, 230, 235, 386
BstMWI GCNNNNNNNGC 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 20
BstUI CGCG 2 cut(s) 167, 360
BstV1I GCAGC 1 cut(s) 337
BstX2I RGATCY 1 cut(s) 224
BstXI CCANNNNNNTGG 1 cut(s) 314
BstYI RGATCY 1 cut(s) 224
BsuRI GGCC 2 cut(s) 343, 371
BtgZI GCGATG 2 cut(s) 221, 312
BtsCI GGATG 2 cut(s) 178, 344
BtsIMutI CAGTG 1 cut(s) 314
Cac8I GCNNGC 4 cut(s) 165, 176, 304, 329
CfoI GCGC 2 cut(s) 277, 360
Cfr13I GGNCC 1 cut(s) 10
CviJI RGCY 6 cut(s) 63, 100, 331, 343, 350, 371
CviKI_1 RGCY 6 cut(s) 63, 100, 331, 343, 350, 371
DdeI CTNAG 1 cut(s) 47
DpnI GATC 6 cut(s) 115, 151, 226, 232, 237, 388
DpnII GATC 6 cut(s) 113, 149, 224, 230, 235, 386
DriI GACNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 2 cut(s) 341, 369
Eam1105I GACNNNNNGTC 1 cut(s) 16
Eco31I GGTCTC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 10
Eco47III AGCGCT 1 cut(s) 276
Eco88I CYCGRG 2 cut(s) 218, 247
FauI CCCGC 1 cut(s) 167
Fnu4HI GCNGC 3 cut(s) 295, 325, 351
FokI GGATG 2 cut(s) 165, 351
Fsp4HI GCNGC 3 cut(s) 295, 325, 351
FspBI CTAG 1 cut(s) 14
GlaI GCGC 2 cut(s) 276, 359
GluI GCNGC 3 cut(s) 295, 325, 351
GsaI CCCAGC 1 cut(s) 335
HaeII RGCGCY 1 cut(s) 278
HaeIII GGCC 2 cut(s) 343, 371
HapII CCGG 3 cut(s) 21, 182, 344
HhaI GCGC 2 cut(s) 277, 360
Hin6I GCGC 2 cut(s) 275, 358
HinP1I GCGC 2 cut(s) 275, 358
HinfI GANTC 1 cut(s) 124
HpaII CCGG 3 cut(s) 21, 182, 344
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 4 cut(s) 54, 118, 235, 391
Hpy188III TCNNGA 2 cut(s) 182, 228
Hpy8I GTNNAC 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 211, 384
HpyF10VI GCNNNNNNNGC 1 cut(s) 303
HpyF3I CTNAG 1 cut(s) 47
HspAI GCGC 2 cut(s) 275, 358
Kpn2I TCCGGA 1 cut(s) 181
Kzo9I GATC 6 cut(s) 113, 149, 224, 230, 235, 386
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 7 cut(s) 34, 74, 195, 241, 317, 320, 357
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 3 cut(s) 187, 198, 289
MaeI CTAG 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 187
MalI GATC 6 cut(s) 115, 151, 226, 232, 237, 388
MbiI CCGCTC 1 cut(s) 324
MboI GATC 6 cut(s) 113, 149, 224, 230, 235, 386
MflI RGATCY 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 9 cut(s) 48, 87, 90, 101, 178, 214, 340, 385, 390
MroI TCCGGA 1 cut(s) 181
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 3 cut(s) 21, 182, 344
MspR9I CCNGG 1 cut(s) 22
MvnI CGCG 2 cut(s) 167, 360
MwoI GCNNNNNNNGC 1 cut(s) 303
NciI CCSGG 1 cut(s) 22
NdeII GATC 6 cut(s) 113, 149, 224, 230, 235, 386
NlaIV GGNNCC 1 cut(s) 226
NmeAIII GCCGAG 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 3 cut(s) 296, 326, 352
PspFI CCCAGC 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 1 cut(s) 10
PsuI RGATCY 1 cut(s) 224
SatI GCNGC 3 cut(s) 295, 325, 351
Sau3AI GATC 6 cut(s) 113, 149, 224, 230, 235, 386
Sau96I GGNCC 1 cut(s) 10
ScrFI CCNGG 1 cut(s) 22
SetI ASST 5 cut(s) 15, 65, 189, 333, 401
SfaNI GCATC 3 cut(s) 187, 198, 289
SinI GGWCC 1 cut(s) 10
SsiI CCGC 6 cut(s) 167, 174, 194, 294, 324, 360
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 20
TaqI TCGA 1 cut(s) 127
TauI GCSGC 2 cut(s) 297, 327
TfiI GAWTC 1 cut(s) 124
TscAI CASTG 1 cut(s) 314
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 1 cut(s) 187
TspRI CASTG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 10
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.