Rh7DG455000

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000222
Physical Location & Seq
Forward (+)
64738955 .. 64739386
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG455000.1

Sequence Viewer

Length: 432 bp
ATGACTGAGGCCATACCAGTACCACTGCAGAAGCTCCGCGGCAAGGTGGCCATCGTCACCGGAGCCGCCAGCGGCATCGGAGCAGTCACTGCTCGCCATTTCGCAAATCACGGCGCTCTCGCCGTCGTAATCGCTGACGTGCAAGACGGCAAGGGCCGAGAAGTGGCCGCATCGATCGGTTCTAACCGCTGCACCTACGTCCACTGCGACGTCGCCGACGAGAACCAGGTCAAATACCTAGTTGACTCTACTGTGAAGCTGTACGGCCGCCTCGACGTGATGTACAGCAACGCGGGAATAACCCCCCCCGTCGGCGCAGACTGTGCTGGAGTTGGACCTGTCCTTGTTCGACAAGGTGATGGCGGTGAACGCGCGAGGGATGGCGGCGTGTGTGAAGCACGCGGCTCGCGCGATGGTAGAGAAGGGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

143

Amino Acids

14.69

Weight (kDa)

6.81

Isoelectric Point (pI)

16.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 15 - 103 4.5e-20 short chain dehydrogenase
KR PF08659 17 - 98 1.3e-06 KR domain
adh_short_C2 PF13561 21 - 105 2.9e-17 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 213
AccII CGCG 7 cut(s) 39, 293, 372, 374, 402, 409, 411
AcoI YGGCCR 3 cut(s) 48, 165, 265
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 3 cut(s) 21, 263, 284
AfiI CCNNNNNNNGG 3 cut(s) 43, 163, 311
AjiI CACGTC 2 cut(s) 139, 277
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 2 cut(s) 34, 259
AluI AGCT 2 cut(s) 34, 259
AlwNI CAGNNNCTG 1 cut(s) 89
AoxI GGCC 5 cut(s) 9, 48, 154, 165, 265
ApeKI GCWGC 1 cut(s) 189
AspLEI GCGC 4 cut(s) 116, 317, 374, 411
AspS9I GGNCC 2 cut(s) 154, 335
AsuHPI GGTGA 3 cut(s) 49, 368, 377
AvaII GGWCC 1 cut(s) 335
BalI TGGCCA 1 cut(s) 50
BbvI GCAGC 1 cut(s) 176
BccI CCATC 4 cut(s) 59, 353, 374, 407
BceAI ACGGC 4 cut(s) 107, 127, 163, 280
BcgI CGANNNNNNTGC 2 cut(s) 387, 421
BciT130I CCWGG 1 cut(s) 227
BfaI CTAG 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 8 cut(s) 40, 66, 73, 168, 190, 268, 385, 403
BlsI GCNGC 8 cut(s) 41, 67, 74, 169, 191, 269, 386, 404
Bme1390I CCNGG 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 335
BmgBI CACGTC 2 cut(s) 139, 277
BmgT120I GGNCC 2 cut(s) 154, 335
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 2 cut(s) 84, 179
BpmI CTGGAG 1 cut(s) 348
Bsa29I ATCGAT 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 59
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 163, 311
Bse1I ACTGG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 227
BseCI ATCGAT 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 3 cut(s) 43, 163, 311
BseNI ACTGG 1 cut(s) 17
BseX3I CGGCCG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 176
BsgI GTGCAG 1 cut(s) 175
Bsh1236I CGCG 7 cut(s) 39, 293, 372, 374, 402, 409, 411
Bsh1285I CGRYCG 2 cut(s) 177, 268
BshFI GGCC 5 cut(s) 11, 50, 156, 167, 267
BshVI ATCGAT 1 cut(s) 173
BsiEI CGRYCG 2 cut(s) 177, 268
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 3 cut(s) 43, 163, 311
BsnI GGCC 5 cut(s) 11, 50, 156, 167, 267
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 1 cut(s) 174
BspANI GGCC 5 cut(s) 11, 50, 156, 167, 267
BspDI ATCGAT 1 cut(s) 173
BspFNI CGCG 7 cut(s) 39, 293, 372, 374, 402, 409, 411
BspLI GGNNCC 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 30
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 1 cut(s) 174
BssNI GRCGYC 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 2 cut(s) 253, 323
BstACI GRCGYC 1 cut(s) 210
BstAPI GCANNNNNTGC 2 cut(s) 89, 323
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 4 cut(s) 70, 94, 400, 407
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 1 cut(s) 385
BstFNI CGCG 7 cut(s) 39, 293, 372, 374, 402, 409, 411
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 4 cut(s) 116, 317, 374, 411
BstKTI GATC 1 cut(s) 177
BstMBI GATC 1 cut(s) 174
BstMCI CGRYCG 2 cut(s) 177, 268
BstMWI GCNNNNNNNGC 4 cut(s) 89, 323, 369, 408
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 225
BstSFI CTRYAG 1 cut(s) 26
BstUI CGCG 7 cut(s) 39, 293, 372, 374, 402, 409, 411
BstV1I GCAGC 1 cut(s) 176
BstZI CGGCCG 1 cut(s) 265
Bsu15I ATCGAT 1 cut(s) 173
BsuRI GGCC 5 cut(s) 11, 50, 156, 167, 267
BsuTUI ATCGAT 1 cut(s) 173
BtgI CCRYGG 1 cut(s) 37
BtgZI GCGATG 1 cut(s) 426
BtrI CACGTC 2 cut(s) 139, 277
BtsCI GGATG 1 cut(s) 385
BtsI GCAGTG 3 cut(s) 23, 87, 202
BtsIMutI CAGTG 3 cut(s) 23, 87, 202
Cac8I GCNNGC 4 cut(s) 70, 94, 400, 407
CaiI CAGNNNCTG 1 cut(s) 89
CfoI GCGC 4 cut(s) 116, 317, 374, 411
Cfr13I GGNCC 2 cut(s) 154, 335
Cfr42I CCGCGG 1 cut(s) 40
ClaI ATCGAT 1 cut(s) 173
CsiI ACCWGGT 1 cut(s) 225
Csp6I GTAC 3 cut(s) 20, 262, 283
CviJI RGCY 9 cut(s) 11, 34, 50, 65, 156, 167, 259, 267, 405
CviKI_1 RGCY 9 cut(s) 11, 34, 50, 65, 156, 167, 259, 267, 405
CviQI GTAC 3 cut(s) 20, 262, 283
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
EaeI YGGCCR 3 cut(s) 48, 165, 265
EagI CGGCCG 1 cut(s) 265
EclXI CGGCCG 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 335
Eco52I CGGCCG 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 225
FaiI YATR 1 cut(s) 14
FauI CCCGC 1 cut(s) 286
Fnu4HI GCNGC 8 cut(s) 40, 66, 73, 168, 190, 268, 385, 403
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 8 cut(s) 40, 66, 73, 168, 190, 268, 385, 403
FspBI CTAG 1 cut(s) 239
GlaI GCGC 4 cut(s) 115, 316, 373, 410
GluI GCNGC 8 cut(s) 40, 66, 73, 168, 190, 268, 385, 403
GsuI CTGGAG 1 cut(s) 348
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 5 cut(s) 11, 50, 156, 167, 267
HapII CCGG 1 cut(s) 60
HhaI GCGC 4 cut(s) 116, 317, 374, 411
Hin1I GRCGYC 1 cut(s) 210
Hin6I GCGC 4 cut(s) 114, 315, 372, 409
HinP1I GCGC 4 cut(s) 114, 315, 372, 409
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 1 cut(s) 245
HpaII CCGG 1 cut(s) 60
HphI GGTGA 3 cut(s) 49, 368, 377
Hpy166II GTNNAC 3 cut(s) 202, 244, 368
Hpy188I TCNGA 1 cut(s) 80
Hpy8I GTNNAC 3 cut(s) 202, 244, 368
Hpy99I CGWCG 6 cut(s) 128, 212, 215, 221, 278, 314
HpyAV CCTTC 1 cut(s) 416
HpyCH4III ACNGT 2 cut(s) 253, 323
HpyCH4IV ACGT 4 cut(s) 138, 198, 210, 276
HpyCH4V TGCA 3 cut(s) 28, 142, 192
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 323, 369, 408
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 4 cut(s) 138, 198, 210, 276
Hsp92I GRCGYC 1 cut(s) 210
HspAI GCGC 4 cut(s) 114, 315, 372, 409
KspI CCGCGG 1 cut(s) 40
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 3 cut(s) 39, 62, 80
LpnPI CCDG 7 cut(s) 30, 73, 82, 212, 239, 312, 351
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 2 cut(s) 84, 179
MabI ACCWGGT 1 cut(s) 225
MaeI CTAG 1 cut(s) 239
MaeII ACGT 4 cut(s) 138, 198, 210, 276
MaeIII GTNAC 2 cut(s) 55, 85
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 50
MluNI TGGCCA 1 cut(s) 50
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 2 cut(s) 281, 369
Mox20I TGGCCA 1 cut(s) 50
MscI TGGCCA 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 50
MspA1I CMGCKG 3 cut(s) 39, 72, 189
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 7 cut(s) 39, 293, 372, 374, 402, 409, 411
MwoI GCNNNNNNNGC 4 cut(s) 89, 323, 369, 408
NdeII GATC 1 cut(s) 174
NlaIV GGNNCC 1 cut(s) 64
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 2 cut(s) 55, 85
PcsI WCGNNNNNNNCGW 3 cut(s) 204, 216, 270
PkrI GCNGC 8 cut(s) 41, 67, 74, 169, 191, 269, 386, 404
Ple19I CGATCG 1 cut(s) 177
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 154, 335
PstI CTGCAG 1 cut(s) 30
PstNI CAGNNNCTG 1 cut(s) 89
PvuI CGATCG 1 cut(s) 177
RsaI GTAC 3 cut(s) 21, 263, 284
RsaNI GTAC 3 cut(s) 20, 262, 283
SacII CCGCGG 1 cut(s) 40
SatI GCNGC 8 cut(s) 40, 66, 73, 168, 190, 268, 385, 403
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 2 cut(s) 154, 335
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 227
SexAI ACCWGGT 1 cut(s) 225
SfaNI GCATC 2 cut(s) 84, 179
SfcI CTRYAG 1 cut(s) 26
Sfr303I CCGCGG 1 cut(s) 40
SgrBI CCGCGG 1 cut(s) 40
SinI GGWCC 1 cut(s) 335
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 225
TaaI ACNGT 2 cut(s) 253, 323
TaiI ACGT 4 cut(s) 141, 201, 213, 279
TaqI TCGA 3 cut(s) 173, 273, 349
TatI WGTACW 1 cut(s) 282
TauI GCSGC 7 cut(s) 42, 68, 75, 170, 270, 387, 405
TscAI CASTG 3 cut(s) 30, 94, 209
TseFI GTSAC 2 cut(s) 55, 85
TseI GCWGC 1 cut(s) 189
Tsp45I GTSAC 2 cut(s) 55, 85
TspRI CASTG 3 cut(s) 30, 94, 209
VpaK11BI GGWCC 1 cut(s) 335
XspI CTAG 1 cut(s) 239
ZraI GACGTC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.