RchiOBHm_Chr7g0180551

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000222
Physical Location & Seq
Forward (+)
2452924 .. 2453916
993 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16101

Sequence Viewer

Length: 768 bp
ATGAGCAACAAATTACAAGGCAAAGTAGCCATAGTCAGCGGCGGCGCAAGCGGCATTGGGGAGGCCACAGCACGCCTCTTCGCCGAGCATGGAGCATCCATGGTGATCATCGTTGACATCCAAGACGATCTCGGCTGTAAAATAGCTGAGTCCATCGGCCACAGATGCAGCTACGTGCACTGTGACGTGGCCGATGAAGAGCAAGTGAGGTCCATGGTGCAAGCAACGGTCGAGAAATTCGGACACGTCGACATCATGTTCAGCAACGCCGGGATAATGAGCCGCCAAGACCAGACCGTCCTTGACCTTGACTTTCCCTCCTTTGACCGTTTGTTCAACGTGAACGTGCGCGGCATGGCGTCGTGCGTGAAACACGCGGCGCGTGCGATGGTGGAGGGGCGCGTGAGGGGGAGCATAGTGTGCACGGCGAGCGTGGGAGCGAGCCACGGGATGGGGAAGAGCACGGACTATTGCATGTCGAAGCATGCCGTGTTGGGGCTGATGAGGTCGGCGAGCGTGCAGCTGGGGGTGCATGGCATTAGGGTGAACTGCGTCTCACCGAATGGGATGGCGACGCCGCTGACGTGCAAGGCGAGTGGGAAGGAGATGGCGGAGCTTCAGAAGGCGTATGAGAAGTTCGCGCGGTTGAGAGGGGTGGTGCTCAAGGCGGAGCACGTGGCCAAGGCGGTGCTGTTTCTTGCGAGTGATGATTCTGAGTTTGTGACTGGACATGATTTGGTTGTTGATGGGTCATTTGTTCCCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

255

Amino Acids

27.15

Weight (kDa)

6.79

Isoelectric Point (pI)

27.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 198 9e-46 short chain dehydrogenase
KR PF08659 10 - 172 3.1e-12 KR domain
adh_short_C2 PF13561 16 - 250 8.8e-63 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
AccB7I CCANNNNNTGG 1 cut(s) 451
AccI GTMKAC 1 cut(s) 249
AccII CGCG 6 cut(s) 351, 377, 382, 402, 641, 643
AcoI YGGCCR 3 cut(s) 157, 189, 678
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 602
AcvI CACGTG 1 cut(s) 676
AcyI GRCGYC 2 cut(s) 359, 575
AfiI CCNNNNNNNGG 2 cut(s) 451, 495
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 1 cut(s) 337
AjiI CACGTC 3 cut(s) 187, 247, 585
AluBI AGCT 4 cut(s) 146, 171, 523, 616
AluI AGCT 4 cut(s) 146, 171, 523, 616
Alw21I GWGCWC 5 cut(s) 180, 425, 464, 663, 675
Alw26I GTCTC 1 cut(s) 559
Alw44I GTGCAC 2 cut(s) 176, 421
AoxI GGCC 4 cut(s) 63, 157, 189, 678
ApaLI GTGCAC 2 cut(s) 176, 421
ApeKI GCWGC 2 cut(s) 168, 520
ApoI RAATTY 1 cut(s) 236
AspLEI GCGC 5 cut(s) 47, 351, 382, 402, 643
AspS9I GGNCC 1 cut(s) 210
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 3 cut(s) 115, 549, 556
AvaII GGWCC 1 cut(s) 210
BaeGI GKGCMC 2 cut(s) 180, 425
BalI TGGCCA 1 cut(s) 680
BbrPI CACGTG 1 cut(s) 676
Bbv12I GWGCWC 5 cut(s) 180, 425, 464, 663, 675
BbvI GCAGC 2 cut(s) 180, 532
BccI CCATC 6 cut(s) 161, 382, 445, 562, 601, 740
BceAI ACGGC 2 cut(s) 441, 473
BclI TGATCA 1 cut(s) 105
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 559
BisI GCNGC 9 cut(s) 40, 43, 52, 169, 283, 352, 378, 521, 578
BlsI GCNGC 9 cut(s) 41, 44, 53, 170, 284, 353, 379, 522, 579
Bme1390I CCNGG 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 210
BmgBI CACGTC 3 cut(s) 187, 247, 585
BmgT120I GGNCC 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 271
BmsI GCATC 2 cut(s) 104, 155
BpuEI CTTGAG 1 cut(s) 647
BpuMI CCSGG 1 cut(s) 271
BsaAI YACGTR 2 cut(s) 175, 676
BsaHI GRCGYC 2 cut(s) 359, 575
BsaJI CCNNGG 4 cut(s) 99, 213, 445, 681
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 2 cut(s) 451, 495
Bse1I ACTGG 1 cut(s) 730
BseDI CCNNGG 4 cut(s) 99, 213, 445, 681
BseGI GGATG 4 cut(s) 95, 117, 456, 573
BseLI CCNNNNNNNGG 2 cut(s) 451, 495
BseMII CTCAG 2 cut(s) 138, 705
BseNI ACTGG 1 cut(s) 730
BseSI GKGCMC 2 cut(s) 180, 425
BseXI GCAGC 2 cut(s) 180, 532
BseYI CCCAGC 1 cut(s) 523
BsgI GTGCAG 1 cut(s) 539
Bsh1236I CGCG 6 cut(s) 351, 377, 382, 402, 641, 643
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 4 cut(s) 65, 159, 191, 680
BsiEI CGRYCG 1 cut(s) 231
BsiHKAI GWGCWC 5 cut(s) 180, 425, 464, 663, 675
BsiSI CCGG 1 cut(s) 270
BslI CCNNNNNNNGG 2 cut(s) 451, 495
BsmAI GTCTC 1 cut(s) 559
BsmBI CGTCTC 1 cut(s) 559
BsnI GGCC 4 cut(s) 65, 159, 191, 680
Bsp1286I GDGCHC 5 cut(s) 180, 425, 464, 663, 675
Bsp143I GATC 2 cut(s) 105, 127
Bsp19I CCATGG 2 cut(s) 99, 213
BspANI GGCC 4 cut(s) 65, 159, 191, 680
BspCNI CTCAG 2 cut(s) 139, 706
BspFNI CGCG 6 cut(s) 351, 377, 382, 402, 641, 643
BspQI GCTCTTC 2 cut(s) 192, 452
BsrI ACTGG 1 cut(s) 730
BssECI CCNNGG 4 cut(s) 99, 213, 445, 681
BssMI GATC 2 cut(s) 105, 127
BssNI GRCGYC 2 cut(s) 359, 575
BssT1I CCWWGG 3 cut(s) 99, 213, 681
Bst4CI ACNGT 4 cut(s) 182, 229, 298, 329
Bst6I CTCTTC 3 cut(s) 83, 192, 452
BstACI GRCGYC 2 cut(s) 359, 575
BstAPI GCANNNNNTGC 1 cut(s) 420
BstBAI YACGTR 2 cut(s) 175, 676
BstC8I GCNNGC 9 cut(s) 49, 73, 222, 384, 430, 442, 486, 514, 518
BstDEI CTNAG 2 cut(s) 147, 714
BstDSI CCRYGG 3 cut(s) 99, 213, 445
BstF5I GGATG 4 cut(s) 95, 117, 456, 573
BstFNI CGCG 6 cut(s) 351, 377, 382, 402, 641, 643
BstHHI GCGC 5 cut(s) 47, 351, 382, 402, 643
BstKTI GATC 2 cut(s) 108, 130
BstMAI GTCTC 1 cut(s) 559
BstMBI GATC 2 cut(s) 105, 127
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 7 cut(s) 48, 51, 165, 383, 420, 429, 529
BstNSI RCATGY 2 cut(s) 478, 488
BstSCI CCNGG 1 cut(s) 269
BstSLI GKGCMC 2 cut(s) 180, 425
BstUI CGCG 6 cut(s) 351, 377, 382, 402, 641, 643
BstV1I GCAGC 2 cut(s) 180, 532
BsuRI GGCC 4 cut(s) 65, 159, 191, 680
BtgI CCRYGG 3 cut(s) 99, 213, 445
BtgZI GCGATG 1 cut(s) 401
BtrI CACGTC 3 cut(s) 187, 247, 585
BtsCI GGATG 4 cut(s) 95, 117, 456, 573
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 9 cut(s) 49, 73, 222, 384, 430, 442, 486, 514, 518
CfoI GCGC 5 cut(s) 47, 351, 382, 402, 643
Cfr13I GGNCC 1 cut(s) 210
CseI GACGC 3 cut(s) 348, 541, 583
CspCI CAANNNNNGTGG 2 cut(s) 577, 612
DdeI CTNAG 2 cut(s) 147, 714
DpnI GATC 2 cut(s) 107, 129
DpnII GATC 2 cut(s) 105, 127
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
EaeI YGGCCR 3 cut(s) 157, 189, 678
Eam1104I CTCTTC 3 cut(s) 83, 192, 452
EarI CTCTTC 3 cut(s) 83, 192, 452
EciI GGCGGA 2 cut(s) 626, 683
Eco130I CCWWGG 3 cut(s) 99, 213, 681
Eco47I GGWCC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 602
Eco72I CACGTG 1 cut(s) 676
EcoT14I CCWWGG 3 cut(s) 99, 213, 681
ErhI CCWWGG 3 cut(s) 99, 213, 681
Esp3I CGTCTC 1 cut(s) 559
FbaI TGATCA 1 cut(s) 105
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 9 cut(s) 40, 43, 52, 169, 283, 352, 378, 521, 578
FokI GGATG 4 cut(s) 82, 104, 463, 580
Fsp4HI GCNGC 9 cut(s) 40, 43, 52, 169, 283, 352, 378, 521, 578
GlaI GCGC 5 cut(s) 46, 350, 381, 401, 642
GluI GCNGC 9 cut(s) 40, 43, 52, 169, 283, 352, 378, 521, 578
GsaI CCCAGC 1 cut(s) 527
HaeIII GGCC 4 cut(s) 65, 159, 191, 680
HapII CCGG 1 cut(s) 270
HgaI GACGC 3 cut(s) 348, 541, 583
HhaI GCGC 5 cut(s) 47, 351, 382, 402, 643
Hin1I GRCGYC 2 cut(s) 359, 575
Hin6I GCGC 5 cut(s) 45, 349, 380, 400, 641
HinP1I GCGC 5 cut(s) 45, 349, 380, 400, 641
HincII GTYRAC 2 cut(s) 115, 250
HindII GTYRAC 2 cut(s) 115, 250
HinfI GANTC 2 cut(s) 149, 710
HpaII CCGG 1 cut(s) 270
HphI GGTGA 3 cut(s) 115, 549, 556
Hpy166II GTNNAC 6 cut(s) 115, 178, 250, 343, 423, 547
Hpy188I TCNGA 3 cut(s) 242, 621, 715
Hpy188III TCNNGA 1 cut(s) 232
Hpy8I GTNNAC 6 cut(s) 115, 178, 250, 343, 423, 547
Hpy99I CGWCG 3 cut(s) 251, 364, 577
HpyAV CCTTC 2 cut(s) 595, 616
HpyCH4III ACNGT 4 cut(s) 182, 229, 298, 329
HpyCH4IV ACGT 7 cut(s) 174, 186, 246, 339, 345, 584, 675
HpyCH4V TGCA 8 cut(s) 168, 178, 220, 423, 474, 520, 532, 588
HpyF10VI GCNNNNNNNGC 7 cut(s) 48, 51, 165, 383, 420, 429, 529
HpyF3I CTNAG 2 cut(s) 147, 714
HpySE526I ACGT 7 cut(s) 174, 186, 246, 339, 345, 584, 675
Hsp92I GRCGYC 2 cut(s) 359, 575
HspAI GCGC 5 cut(s) 45, 349, 380, 400, 641
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 2 cut(s) 105, 127
LguI GCTCTTC 2 cut(s) 192, 452
LmnI GCTCC 5 cut(s) 92, 411, 437, 613, 670
LpnPI CCDG 4 cut(s) 283, 305, 509, 711
Lsp1109I GCAGC 2 cut(s) 180, 532
LweI GCATC 2 cut(s) 104, 155
MaeII ACGT 7 cut(s) 174, 186, 246, 339, 345, 584, 675
MaeIII GTNAC 2 cut(s) 182, 721
MalI GATC 2 cut(s) 107, 129
MboI GATC 2 cut(s) 105, 127
MboII GAAGA 3 cut(s) 70, 209, 469
MhlI GDGCHC 5 cut(s) 180, 425, 464, 663, 675
MlsI TGGCCA 1 cut(s) 680
MluCI AATT 2 cut(s) 11, 236
MluNI TGGCCA 1 cut(s) 680
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 8 cut(s) 55, 86, 201, 328, 388, 399, 498, 644
Mox20I TGGCCA 1 cut(s) 680
MscI TGGCCA 1 cut(s) 680
MslI CAYNNNNRTG 1 cut(s) 542
Msp20I TGGCCA 1 cut(s) 680
MspA1I CMGCKG 3 cut(s) 39, 523, 580
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 271
MvnI CGCG 6 cut(s) 351, 377, 382, 402, 641, 643
MwoI GCNNNNNNNGC 7 cut(s) 48, 51, 165, 383, 420, 429, 529
NciI CCSGG 1 cut(s) 271
NcoI CCATGG 2 cut(s) 99, 213
NdeII GATC 2 cut(s) 105, 127
NmeAIII GCCGAG 2 cut(s) 109, 111
NmuCI GTSAC 2 cut(s) 182, 721
NspI RCATGY 2 cut(s) 478, 488
PaeI GCATGC 1 cut(s) 488
PciSI GCTCTTC 2 cut(s) 192, 452
PcsI WCGNNNNNNNCGW 3 cut(s) 246, 581, 590
PfeI GAWTC 1 cut(s) 710
PflMI CCANNNNNTGG 1 cut(s) 451
PkrI GCNGC 9 cut(s) 41, 44, 53, 170, 284, 353, 379, 522, 579
PleI GAGTC 1 cut(s) 157
PmaCI CACGTG 1 cut(s) 676
PmlI CACGTG 1 cut(s) 676
PpsI GAGTC 1 cut(s) 157
Ppu21I YACGTR 2 cut(s) 175, 676
PspCI CACGTG 1 cut(s) 676
PspFI CCCAGC 1 cut(s) 523
PspPI GGNCC 1 cut(s) 210
PsrI GAACNNNNNNTAC 2 cut(s) 620, 652
PvuII CAGCTG 1 cut(s) 523
RseI CAYNNNNRTG 1 cut(s) 542
SalI GTCGAC 1 cut(s) 248
SapI GCTCTTC 2 cut(s) 192, 452
SatI GCNGC 9 cut(s) 40, 43, 52, 169, 283, 352, 378, 521, 578
Sau3AI GATC 2 cut(s) 105, 127
Sau96I GGNCC 1 cut(s) 210
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 5 cut(s) 180, 425, 464, 663, 675
SfaNI GCATC 2 cut(s) 104, 155
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 662
SmoI CTYRAG 1 cut(s) 662
SphI GCATGC 1 cut(s) 488
Sse9I AATT 2 cut(s) 11, 236
StyD4I CCNGG 1 cut(s) 269
StyI CCWWGG 3 cut(s) 99, 213, 681
TaaI ACNGT 4 cut(s) 182, 229, 298, 329
TaiI ACGT 7 cut(s) 177, 189, 249, 342, 348, 587, 678
TaqI TCGA 3 cut(s) 231, 249, 479
TasI AATT 2 cut(s) 11, 236
TauI GCSGC 7 cut(s) 42, 45, 54, 285, 354, 380, 580
TfiI GAWTC 1 cut(s) 710
TscAI CASTG 1 cut(s) 185
TseFI GTSAC 2 cut(s) 182, 721
TseI GCWGC 2 cut(s) 168, 520
Tsp45I GTSAC 2 cut(s) 182, 721
TspDTI ATGAA 1 cut(s) 210
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 1 cut(s) 185
Van91I CCANNNNNTGG 1 cut(s) 451
VneI GTGCAC 2 cut(s) 176, 421
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 1 cut(s) 236
XceI RCATGY 2 cut(s) 478, 488
XmiI GTMKAC 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.