Rh7BG440300

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0005185
Physical Location & Seq
Reverse (-)
50661244 .. 50661579
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG440300.1

Sequence Viewer

Length: 336 bp
ATGCTCATAGCCATTGCCCGCCAAAGCCAGGGATTTGGCATCAGCCTGATTCCAGTGGTGTCTCCCAAATTGCCGTTTTTCCCACGATCGAATATCACCCTAGTCGAAATACACCAAAACCTGGTCCAACTATCAAAAGCTCACGCCCTTCGCTTCATGAGAGTATACCCTGCAGACAGAAACACTACTTCAACTATACAATCCCCAGTCAAAAGGGCTTTCAGTGGTTATCTGTACGTTGAAATCTACATAGGTAGCCCTTCCGTGAAGTCAAACTTGGCCTTGGACACCGGTAGTGACATAACATGGGTGCAATGTGCTGAATGCACAAAGTGA

Protein Analysis

111

Amino Acids

12.31

Weight (kDa)

9.56

Isoelectric Point (pI)

58.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 79 - 110 1.5e-08 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 121
AccI GTMKAC 1 cut(s) 165
AciI CCGC 1 cut(s) 19
AdeI CACNNNGTG 1 cut(s) 333
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 28, 121
AgeI ACCGGT 1 cut(s) 290
AgsI TTSAA 2 cut(s) 192, 242
AjnI CCWGG 2 cut(s) 27, 120
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 66
AoxI GGCC 1 cut(s) 279
AsiGI ACCGGT 1 cut(s) 290
AspS9I GGNCC 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 124
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 2 cut(s) 29, 122
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 171
Bme1390I CCNGG 2 cut(s) 29, 122
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 124
BmrFI CCNGG 2 cut(s) 29, 122
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 1 cut(s) 48
BmuI ACTGGG 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 28, 282
BsaWI WCCGGW 1 cut(s) 290
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 121
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 2 cut(s) 53, 206
Bse3DI GCAATG 2 cut(s) 12, 320
BseBI CCWGG 2 cut(s) 29, 122
BseDI CCNNGG 2 cut(s) 28, 282
BseLI CCNNNNNNNGG 2 cut(s) 28, 121
BseMI GCAATG 2 cut(s) 12, 320
BseNI ACTGG 2 cut(s) 53, 206
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 1 cut(s) 281
BshTI ACCGGT 1 cut(s) 290
BsiEI CGRYCG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 2 cut(s) 28, 121
BsmAI GTCTC 1 cut(s) 66
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 1 cut(s) 281
Bsp143I GATC 1 cut(s) 86
BspACI CCGC 1 cut(s) 19
BspANI GGCC 1 cut(s) 281
BspHI TCATGA 1 cut(s) 156
BspMAI CTGCAG 1 cut(s) 175
BsrDI GCAATG 2 cut(s) 12, 320
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 2 cut(s) 53, 206
BssAI RCCGGY 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 28, 282
BssMI GATC 1 cut(s) 86
BssNAI GTATAC 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 282
Bst1107I GTATAC 1 cut(s) 166
Bst2UI CCWGG 2 cut(s) 29, 122
BstC8I GCNNGC 1 cut(s) 19
BstKTI GATC 1 cut(s) 89
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 1 cut(s) 86
BstMCI CGRYCG 1 cut(s) 89
BstNI CCWGG 2 cut(s) 29, 122
BstSCI CCNGG 2 cut(s) 27, 120
BstSFI CTRYAG 1 cut(s) 171
BstXI CCANNNNNNTGG 1 cut(s) 35
BstZ17I GTATAC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 281
BtsIMutI CAGTG 2 cut(s) 60, 229
Cac8I GCNNGC 1 cut(s) 19
CciI TCATGA 1 cut(s) 156
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 124
CsiI ACCWGGT 1 cut(s) 120
Csp6I GTAC 1 cut(s) 235
CspAI ACCGGT 1 cut(s) 290
CviAII CATG 2 cut(s) 157, 306
CviJI RGCY 7 cut(s) 11, 27, 45, 140, 218, 258, 281
CviKI_1 RGCY 7 cut(s) 11, 27, 45, 140, 218, 258, 281
CviQI GTAC 1 cut(s) 235
DpnI GATC 1 cut(s) 88
DpnII GATC 1 cut(s) 86
DraIII CACNNNGTG 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 124
EcoRII CCWGG 2 cut(s) 27, 120
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 2 cut(s) 160, 309
FaiI YATR 7 cut(s) 8, 158, 166, 197, 251, 302, 307
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FatI CATG 2 cut(s) 156, 305
FauI CCCGC 1 cut(s) 26
FblI GTMKAC 1 cut(s) 165
FspBI CTAG 1 cut(s) 101
HaeIII GGCC 1 cut(s) 281
HapII CCGG 1 cut(s) 291
Hin1II CATG 2 cut(s) 160, 309
HinfI GANTC 1 cut(s) 49
HpaII CCGG 1 cut(s) 291
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 2 cut(s) 158, 270
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 173, 313, 327
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 2 cut(s) 160, 309
Kzo9I GATC 1 cut(s) 86
LpnPI CCDG 9 cut(s) 14, 41, 59, 66, 107, 134, 183, 219, 304
LweI GCATC 1 cut(s) 48
MabI ACCWGGT 1 cut(s) 120
MaeI CTAG 1 cut(s) 101
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 296
MalI GATC 1 cut(s) 88
MboI GATC 1 cut(s) 86
MluCI AATT 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 151
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 2 cut(s) 29, 122
Mva1269I GAATGC 1 cut(s) 329
MvaI CCWGG 2 cut(s) 29, 122
NdeII GATC 1 cut(s) 86
NlaIII CATG 2 cut(s) 160, 309
NmuCI GTSAC 1 cut(s) 296
PagI TCATGA 1 cut(s) 156
PctI GAATGC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 49
PflMI CCANNNNNTGG 1 cut(s) 121
PinAI ACCGGT 1 cut(s) 290
Ple19I CGATCG 1 cut(s) 89
Psp6I CCWGG 2 cut(s) 27, 120
PspGI CCWGG 2 cut(s) 27, 120
PspPI GGNCC 1 cut(s) 124
PstI CTGCAG 1 cut(s) 175
PvuI CGATCG 1 cut(s) 89
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
Sau3AI GATC 1 cut(s) 86
Sau96I GGNCC 1 cut(s) 124
ScrFI CCNGG 2 cut(s) 29, 122
SetI ASST 4 cut(s) 123, 142, 240, 256
SexAI ACCWGGT 1 cut(s) 120
SfaNI GCATC 1 cut(s) 48
SfcI CTRYAG 1 cut(s) 171
SinI GGWCC 1 cut(s) 124
Sse9I AATT 1 cut(s) 68
SsiI CCGC 1 cut(s) 19
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 2 cut(s) 27, 120
StyI CCWWGG 1 cut(s) 282
TaiI ACGT 1 cut(s) 240
TaqI TCGA 2 cut(s) 89, 105
TasI AATT 1 cut(s) 68
TfiI GAWTC 1 cut(s) 49
TscAI CASTG 2 cut(s) 60, 229
TseFI GTSAC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 1 cut(s) 145
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 2 cut(s) 60, 229
Van91I CCANNNNNTGG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.