RchiOBHm_Chr3g0452701

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005185
Physical Location & Seq
Reverse (-)
3279650 .. 3280480
831 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41983

Sequence Viewer

Length: 819 bp
ATGTATGACGCAGCAGACACGCTTGGCACCAAAGGTTACTTTGGTGTTGACTACTTCGGTCGGAATCAGATTGCTTTTGGGCTTGGGGTGAATAACACAGTGGTGTTCGACACCGGCCGTAAAGGGGATGATCTCATTGCCGGCACCTTTGGCCTGGGAAAGGGCCATCCTTCCAGCATAATAAATCAGCTCAACTACAGCCGCTTTGCTTGGTGCTTACCAGAAAAGTTGCGGGTGCAGGATCCGGACCACCCTCCTACCCTTGATTTGGGGGGTGATGCCTTCATCAACGATACTGTCCCAGGTCGTCACACAACGCCGTTAGCCATCGACACCAGCTATAATTACATCAACTTGACGTTCATAAGACTCAATGGAGAAATTGTGTACATGGCAGTAAACCCTTCTCGGCCAAAAGCGACATACGTCATCCTTGACGCTGGGTTTCCCCTGACGATGTTGGTCAACGAGGCTTTCTACAGTCTCCAGGGCGGTGTAATCAGGTATTTCGCCAAAATCTACGGCTGGAAGCCTATTAACAAAACCAAGTCTGGATACGACTTGTGTTTTGATCTGCCAAACAATATGTCCAGTGGTGACATTGTCTTCCCCAGAGTTGAGGCGGAGTTCCTCGGCGGAGCCGTCTTCGAGCTCAAAAGATCTTTTGTGACCGTGGAAGAGGTGCGCGAGGTTTGCATGACTCTCATCTTGCTGGATCCTGAAGGTCCCAACATTGTTGGTGCTGAGCAGCAAATGGGTTTTCGTTTCATGATTGACTATGCTCAGTCTAGCCTAACCTTCGCCCCAAATATGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

272

Amino Acids

30.14

Weight (kDa)

5.0

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 116 - 268 1.5e-13 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 26, 143
AccII CGCG 1 cut(s) 687
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 5 cut(s) 202, 232, 492, 623, 636
AclWI GGATC 4 cut(s) 236, 249, 710, 723
AcoI YGGCCR 2 cut(s) 115, 410
AcuI CTGAAG 1 cut(s) 741
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 3 cut(s) 124, 160, 268
AjnI CCWGG 3 cut(s) 153, 301, 486
AleI CACNNNNGTG 1 cut(s) 101
AluBI AGCT 3 cut(s) 190, 339, 652
AluI AGCT 3 cut(s) 190, 339, 652
Alw21I GWGCWC 1 cut(s) 654
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 4 cut(s) 236, 249, 710, 723
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 4 cut(s) 115, 151, 163, 410
ApeKI GCWGC 2 cut(s) 11, 748
ArsI GACNNNNNNTTYG 4 cut(s) 551, 572, 583, 604
AspLEI GCGC 1 cut(s) 687
AspS9I GGNCC 3 cut(s) 163, 247, 725
AsuHPI GGTGA 3 cut(s) 100, 287, 608
AvaII GGWCC 2 cut(s) 247, 725
BamHI GGATCC 2 cut(s) 241, 715
BanI GGYRCC 2 cut(s) 26, 143
BanII GRGCYC 1 cut(s) 654
BbsI GAAGAC 2 cut(s) 598, 637
Bbv12I GWGCWC 1 cut(s) 654
BbvI GCAGC 2 cut(s) 23, 760
BccI CCATC 2 cut(s) 174, 335
BceAI ACGGC 4 cut(s) 102, 304, 538, 626
BciT130I CCWGG 3 cut(s) 155, 303, 488
BciVI GTATCC 1 cut(s) 548
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 2 cut(s) 789, 817
BfmI CTRYAG 2 cut(s) 196, 478
BfuI GTATCC 1 cut(s) 548
BglII AGATCT 1 cut(s) 659
BisI GCNGC 3 cut(s) 12, 202, 749
BlpI GCTNAGC 1 cut(s) 744
BlsI GCNGC 3 cut(s) 13, 203, 750
Bme1390I CCNGG 3 cut(s) 155, 303, 488
Bme18I GGWCC 2 cut(s) 247, 725
BmgT120I GGNCC 3 cut(s) 163, 247, 725
BmiI GGNNCC 6 cut(s) 28, 145, 243, 640, 717, 727
BmrFI CCNGG 3 cut(s) 155, 303, 488
BmsI GCATC 1 cut(s) 268
BoxI GACNNNNGTC 1 cut(s) 425
BpiI GAAGAC 2 cut(s) 598, 637
BpmI CTGGAG 1 cut(s) 470
Bpu1102I GCTNAGC 1 cut(s) 744
BsaJI CCNNGG 5 cut(s) 154, 301, 487, 631, 672
BsaWI WCCGGW 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 160, 268
Bse118I RCCGGY 2 cut(s) 113, 140
Bse1I ACTGG 1 cut(s) 591
Bse3DI GCAATG 1 cut(s) 135
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 3 cut(s) 155, 303, 488
BseDI CCNNGG 5 cut(s) 154, 301, 487, 631, 672
BseGI GGATG 3 cut(s) 133, 166, 429
BseLI CCNNNNNNNGG 3 cut(s) 124, 160, 268
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 2 cut(s) 735, 797
BseNI ACTGG 1 cut(s) 591
BseX3I CGGCCG 1 cut(s) 115
BseXI GCAGC 2 cut(s) 23, 760
BseYI CCCAGC 1 cut(s) 440
BsgI GTGCAG 1 cut(s) 257
Bsh1236I CGCG 1 cut(s) 687
Bsh1285I CGRYCG 2 cut(s) 61, 118
BshFI GGCC 4 cut(s) 117, 153, 165, 412
BshNI GGYRCC 2 cut(s) 26, 143
BsiEI CGRYCG 2 cut(s) 61, 118
BsiHKAI GWGCWC 1 cut(s) 654
BsiSI CCGG 3 cut(s) 114, 141, 245
BslFI GGGAC 2 cut(s) 284, 711
BslI CCNNNNNNNGG 3 cut(s) 124, 160, 268
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 2 cut(s) 284, 711
BsnI GGCC 4 cut(s) 117, 153, 165, 412
Bsp1286I GDGCHC 1 cut(s) 654
Bsp13I TCCGGA 1 cut(s) 244
Bsp1407I TGTACA 1 cut(s) 387
Bsp143I GATC 5 cut(s) 130, 241, 571, 659, 715
Bsp1720I GCTNAGC 1 cut(s) 744
BspACI CCGC 5 cut(s) 202, 232, 492, 623, 636
BspANI GGCC 4 cut(s) 117, 153, 165, 412
BspCNI CTCAG 2 cut(s) 736, 796
BspEI TCCGGA 1 cut(s) 244
BspFNI CGCG 1 cut(s) 687
BspHI TCATGA 1 cut(s) 768
BspLI GGNNCC 6 cut(s) 28, 145, 243, 640, 717, 727
BspPI GGATC 4 cut(s) 236, 249, 710, 723
BspT107I GGYRCC 2 cut(s) 26, 143
BsrDI GCAATG 1 cut(s) 135
BsrFI RCCGGY 2 cut(s) 113, 140
BsrGI TGTACA 1 cut(s) 387
BsrI ACTGG 1 cut(s) 591
BssAI RCCGGY 2 cut(s) 113, 140
BssECI CCNNGG 5 cut(s) 154, 301, 487, 631, 672
BssMI GATC 5 cut(s) 130, 241, 571, 659, 715
Bst2UI CCWGG 3 cut(s) 155, 303, 488
Bst4CI ACNGT 4 cut(s) 100, 298, 482, 673
Bst6I CTCTTC 1 cut(s) 672
BstAUI TGTACA 1 cut(s) 387
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 744, 783
BstDSI CCRYGG 1 cut(s) 672
BstENI CCTNNNNNAGG 1 cut(s) 158
BstF5I GGATG 3 cut(s) 133, 166, 429
BstFNI CGCG 1 cut(s) 687
BstHHI GCGC 1 cut(s) 687
BstKTI GATC 5 cut(s) 133, 244, 574, 662, 718
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 5 cut(s) 130, 241, 571, 659, 715
BstMCI CGRYCG 2 cut(s) 61, 118
BstMWI GCNNNNNNNGC 2 cut(s) 150, 693
BstNI CCWGG 3 cut(s) 155, 303, 488
BstPAI GACNNNNGTC 1 cut(s) 425
BstSCI CCNGG 3 cut(s) 153, 301, 486
BstSFI CTRYAG 2 cut(s) 196, 478
BstUI CGCG 1 cut(s) 687
BstV1I GCAGC 2 cut(s) 23, 760
BstV2I GAAGAC 2 cut(s) 598, 637
BstX2I RGATCY 3 cut(s) 241, 659, 715
BstYI RGATCY 3 cut(s) 241, 659, 715
BstZI CGGCCG 1 cut(s) 115
BsuI GTATCC 1 cut(s) 548
BsuRI GGCC 4 cut(s) 117, 153, 165, 412
BtgI CCRYGG 1 cut(s) 672
BtsCI GGATG 3 cut(s) 133, 166, 429
BtsIMutI CAGTG 2 cut(s) 105, 598
Cac8I GCNNGC 1 cut(s) 142
CciI TCATGA 1 cut(s) 768
CfoI GCGC 1 cut(s) 687
Cfr10I RCCGGY 2 cut(s) 113, 140
Cfr13I GGNCC 3 cut(s) 163, 247, 725
CseI GACGC 2 cut(s) 17, 446
Csp6I GTAC 1 cut(s) 388
CviAII CATG 3 cut(s) 391, 697, 769
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 2 cut(s) 744, 783
DpnI GATC 5 cut(s) 132, 243, 573, 661, 717
DpnII GATC 5 cut(s) 130, 241, 571, 659, 715
EaeI YGGCCR 2 cut(s) 115, 410
EagI CGGCCG 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
EciI GGCGGA 2 cut(s) 638, 651
Ecl136II GAGCTC 1 cut(s) 652
EclXI CGGCCG 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 654
Eco47I GGWCC 2 cut(s) 247, 725
Eco52I CGGCCG 1 cut(s) 115
Eco53kI GAGCTC 1 cut(s) 652
Eco57I CTGAAG 1 cut(s) 741
EcoICRI GAGCTC 1 cut(s) 652
EcoNI CCTNNNNNAGG 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 725
EcoRII CCWGG 3 cut(s) 153, 301, 486
EcoT38I GRGCYC 1 cut(s) 654
FaeI CATG 3 cut(s) 394, 700, 772
FaqI GGGAC 2 cut(s) 284, 711
FatI CATG 3 cut(s) 390, 696, 768
FauI CCCGC 1 cut(s) 225
Fnu4HI GCNGC 3 cut(s) 12, 202, 749
FokI GGATG 3 cut(s) 140, 153, 416
FriOI GRGCYC 1 cut(s) 654
Fsp4HI GCNGC 3 cut(s) 12, 202, 749
FspBI CTAG 2 cut(s) 789, 817
GlaI GCGC 1 cut(s) 686
GluI GCNGC 3 cut(s) 12, 202, 749
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 470
HaeIII GGCC 4 cut(s) 117, 153, 165, 412
HapII CCGG 3 cut(s) 114, 141, 245
HgaI GACGC 2 cut(s) 17, 446
HhaI GCGC 1 cut(s) 687
Hin1II CATG 3 cut(s) 394, 700, 772
Hin6I GCGC 1 cut(s) 685
HinP1I GCGC 1 cut(s) 685
HincII GTYRAC 2 cut(s) 49, 466
HindII GTYRAC 2 cut(s) 49, 466
HinfI GANTC 3 cut(s) 64, 369, 700
HpaII CCGG 3 cut(s) 114, 141, 245
HphI GGTGA 3 cut(s) 100, 287, 608
Hpy166II GTNNAC 4 cut(s) 49, 388, 400, 466
Hpy188I TCNGA 2 cut(s) 63, 69
Hpy188III TCNNGA 4 cut(s) 245, 552, 719, 769
Hpy8I GTNNAC 4 cut(s) 49, 388, 400, 466
HpyAV CCTTC 5 cut(s) 180, 292, 414, 716, 808
HpyCH4III ACNGT 4 cut(s) 100, 298, 482, 673
HpyCH4IV ACGT 2 cut(s) 359, 426
HpyCH4V TGCA 2 cut(s) 238, 696
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 693
HpyF3I CTNAG 2 cut(s) 744, 783
HpySE526I ACGT 2 cut(s) 359, 426
Hsp92II CATG 3 cut(s) 394, 700, 772
HspAI GCGC 1 cut(s) 685
Kpn2I TCCGGA 1 cut(s) 244
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Kzo9I GATC 5 cut(s) 130, 241, 571, 659, 715
LmnI GCTCC 1 cut(s) 638
Lsp1109I GCAGC 2 cut(s) 23, 760
LweI GCATC 1 cut(s) 268
MaeI CTAG 2 cut(s) 789, 817
MaeII ACGT 2 cut(s) 359, 426
MaeIII GTNAC 4 cut(s) 35, 308, 596, 667
MalI GATC 5 cut(s) 132, 243, 573, 661, 717
MboI GATC 5 cut(s) 130, 241, 571, 659, 715
MboII GAAGA 3 cut(s) 598, 637, 689
MflI RGATCY 3 cut(s) 241, 659, 715
MhlI GDGCHC 1 cut(s) 654
MluCI AATT 2 cut(s) 343, 381
MlyI GAGTC 2 cut(s) 363, 694
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 6 cut(s) 264, 463, 613, 641, 673, 682
MroI TCCGGA 1 cut(s) 244
MroNI GCCGGC 1 cut(s) 140
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 1 cut(s) 101
MspI CCGG 3 cut(s) 114, 141, 245
MspR9I CCNGG 3 cut(s) 155, 303, 488
MvaI CCWGG 3 cut(s) 155, 303, 488
MvnI CGCG 1 cut(s) 687
MwoI GCNNNNNNNGC 2 cut(s) 150, 693
NaeI GCCGGC 1 cut(s) 142
NdeII GATC 5 cut(s) 130, 241, 571, 659, 715
NgoMIV GCCGGC 1 cut(s) 140
NlaIII CATG 3 cut(s) 394, 700, 772
NlaIV GGNNCC 6 cut(s) 28, 145, 243, 640, 717, 727
NmeAIII GCCGAG 2 cut(s) 388, 612
NmuCI GTSAC 3 cut(s) 308, 596, 667
OliI CACNNNNGTG 1 cut(s) 101
PagI TCATGA 1 cut(s) 768
PcsI WCGNNNNNNNCGW 1 cut(s) 639
PdiI GCCGGC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 64
PflFI GACNNNGTC 1 cut(s) 602
PkrI GCNGC 3 cut(s) 13, 203, 750
PleI GAGTC 2 cut(s) 363, 694
PpsI GAGTC 2 cut(s) 363, 694
PpuMI RGGWCCY 1 cut(s) 725
PshAI GACNNNNGTC 1 cut(s) 425
Psp124BI GAGCTC 1 cut(s) 654
Psp5II RGGWCCY 1 cut(s) 725
Psp6I CCWGG 3 cut(s) 153, 301, 486
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 3 cut(s) 153, 301, 486
PspN4I GGNNCC 6 cut(s) 28, 145, 243, 640, 717, 727
PspPI GGNCC 3 cut(s) 163, 247, 725
PspPPI RGGWCCY 1 cut(s) 725
PsuI RGATCY 3 cut(s) 241, 659, 715
PsyI GACNNNGTC 1 cut(s) 602
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
RseI CAYNNNNRTG 1 cut(s) 101
SacI GAGCTC 1 cut(s) 654
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 3 cut(s) 12, 202, 749
Sau3AI GATC 5 cut(s) 130, 241, 571, 659, 715
Sau96I GGNCC 3 cut(s) 163, 247, 725
SchI GAGTC 2 cut(s) 363, 694
ScrFI CCNGG 3 cut(s) 155, 303, 488
SduI GDGCHC 1 cut(s) 654
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 2 cut(s) 196, 478
SinI GGWCC 2 cut(s) 247, 725
SmiMI CAYNNNNRTG 1 cut(s) 101
Sse9I AATT 2 cut(s) 343, 381
SsiI CCGC 5 cut(s) 202, 232, 492, 623, 636
SspMI CTAG 2 cut(s) 789, 817
SstI GAGCTC 1 cut(s) 654
StyD4I CCNGG 3 cut(s) 153, 301, 486
TaaI ACNGT 4 cut(s) 100, 298, 482, 673
TaiI ACGT 2 cut(s) 362, 429
TaqI TCGA 3 cut(s) 108, 330, 648
TaqII GACCGA 1 cut(s) 47
TasI AATT 2 cut(s) 343, 381
TatI WGTACW 1 cut(s) 387
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 2 cut(s) 105, 598
TseFI GTSAC 3 cut(s) 308, 596, 667
TseI GCWGC 2 cut(s) 11, 748
Tsp45I GTSAC 3 cut(s) 308, 596, 667
TspDTI ATGAA 3 cut(s) 274, 352, 757
TspRI CASTG 2 cut(s) 105, 598
Tth111I GACNNNGTC 1 cut(s) 602
VpaK11BI GGWCC 2 cut(s) 247, 725
XagI CCTNNNNNAGG 1 cut(s) 158
XspI CTAG 2 cut(s) 789, 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.