Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005185

Physical Location & Seq

Genomic Coordinates Reverse (-)

4909041 .. 4910255

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g08260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGACTCCCCCCTTGTTCTTCATCACTCTTCCAGCACTCTTTGTGGTGCTAGTTTCTGCTCACCACGGTGTACGTGCACCTCTCTTTAGGGCACTCCGGAGTCCCTTCTTCTACGTCGAAGTAGGGATTGGCTCGCCTCCTGTCTACGTCAAACTGGTGTTCGACACAGCCAGCACCACAACCTGGACGCAGTGCGCAGCCTGCAATACATGCTTTCCAGTGGCGATCCCTCCTTTCGATCCGAAGTTCAGTTCAACCTATCGGCGGTTACCGGAAAACCACCCTCTTTGCCGTGGTGGTTACGGAACAGAACATTCCGGAAAGTTCTGCAATTTCACAATGGAATACATCGACGGCCAACTAATCCGCGGTCAATTATCATTGGACACGTTCGTCCTTGGAAGCTCAAAACACAAGGTTCCAGATTTTGTGTTTGGTTGCGGACTCGACGATAAGAACGTCTTGGACTTTTTAAACGATACACATAATCCAATCTCTGGGGTTTTCGGCATTGGTATGAATGATCCTACCTCTATCTTATATCAGTTAAGTTCTTTCACCGAGCTCAAGTTTTCTTATTGTCTTCCACTGCGTGTATATGAGGAGAATGATCACCAGCACCATCATCATGCATGGTTGCATTTTGGTAAGGAGGCCGAGATCAAAAGCCACGATGGTGTAGTTGTACAAATCACACCACTTTTAGCAGGGAGGTGGGATGATAATACTTACTATGCGAAACTGAATGCTATAAGTGTAAATGGTTTATTTTTGCCAATAGATCCGATAGTGTTTACGAGGGGTAATGGAGTAGGGGTGGTTTTGGACTCGGGCACTCCATACACGATGTTTGTGGAGGAAGCATACACGCCTATACGAGAAGCTGTGGTGAAACACTTTCTGGAAAAGTATGGATGGGAAGCTATGAAGACGAGTGGATCTGGTAATTTTGACTTATGTTACAAGATGGTGCATCGACCAGCAATAGGAGACGTTGAATTCCCGGAACTGAAATTTCATTTTGAAGGAGAGGCAGTCATGGAGCTGATCAGAGATGCAGTATTCCAGGCGTTTGGTCACCCCATGAATGAGTTCTGCTTAATGATTCAGTCCTCTCTCTCTGACAATTTGTTGGGGGCGTTTCAGATGGTGAATCAAAGAATGCTGTTTGACGTTGGTGCGTCAAAACTATCATTTGTACCACAGAGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

405

Amino Acids

45.27

Weight (kDa)

5.83

Isoelectric Point (pI)

30.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	37 - 204	1.7e-32	Xylanase inhibitor N-terminal
Asp	PF00026	37 - 399	7.2e-09	Eukaryotic aspartyl protease
TAXi_C	PF14541	244 - 400	8e-24	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005185)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34990 FvH4_3g35000 FvH4_5g18970 FvH4_6g04130 FvH4_6g08260
malus_domestica	MD02G1129300.v1.1 MD04G1217500.v1.1 MD12G1123700.v1.1 MD12G1232300.v1.1
prunus_persica	Prupe.5G037200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0452701 RchiOBHm_Chr3g0452711
rosa_laevigata	RLG00000000901 RLG00000025573
rosa_roxburghii	Rroxscaffold_3G00222790 Rroxscaffold_6G00429720
rosa_rugosa	Rorug02G0642700 Rorug02G0642800 Rorug07G0314700
rosa_samantha	Rh3BG047400 Rh3BG047500 Rh3CG045900 Rh3CG046000 Rh3DG046200 Rh3DG046300 Rh7AG470200 Rh7AG470300 Rh7BG440300
rosa_wichuraiana	Rw3G003510 Rw3G003520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	392
Acc16I	TGCGCA	1 cut(s)	196
AccB7I	CCANNNNNTGG	2 cut(s)	183, 497
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	1 cut(s)	369
AccIII	TCCGGA	2 cut(s)	96, 317
AciI	CCGC	4 cut(s)	265, 367, 369, 441
AclWI	GGATC	5 cut(s)	220, 233, 518, 776, 946
AcoI	YGGCCR	1 cut(s)	355
AcsI	RAATTY	2 cut(s)	998, 1013
AdeI	CACNNNGTG	1 cut(s)	593
AfaI	GTAC	3 cut(s)	72, 687, 1200
AfiI	CCNNNNNNNGG	4 cut(s)	183, 264, 497, 986
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	3 cut(s)	255, 998, 1025
AjnI	CCWGG	2 cut(s)	182, 1065
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AleI	CACNNNNGTG	2 cut(s)	66, 675
AluBI	AGCT	6 cut(s)	405, 565, 884, 923, 1045, 1209
AluI	AGCT	6 cut(s)	405, 565, 884, 923, 1045, 1209
Alw21I	GWGCWC	2 cut(s)	79, 567
Alw26I	GTCTC	1 cut(s)	984
Alw44I	GTGCAC	1 cut(s)	75
AlwI	GGATC	5 cut(s)	220, 233, 518, 776, 946
Ama87I	CYCGRG	1 cut(s)	829
Aor13HI	TCCGGA	2 cut(s)	96, 317
AoxI	GGCC	2 cut(s)	355, 654
ApaLI	GTGCAC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	2 cut(s)	998, 1013
Asp700I	GAANNNNTTC	1 cut(s)	1091
AspLEI	GCGC	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	1004
AsuHPI	GGTGA	6 cut(s)	53, 550, 605, 901, 1070, 1162
AvaI	CYCGRG	1 cut(s)	829
BaeGI	GKGCMC	3 cut(s)	79, 94, 836
BanII	GRGCYC	1 cut(s)	567
BbsI	GAAGAC	2 cut(s)	575, 935
Bbv12I	GWGCWC	2 cut(s)	79, 567
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	5 cut(s)	630, 668, 909, 961, 1141
BceAI	ACGGC	2 cut(s)	276, 370
BciT130I	CCWGG	2 cut(s)	184, 1067
BclI	TGATCA	2 cut(s)	610, 1047
BcnI	CCSGG	1 cut(s)	1004
BcoDI	GTCTC	1 cut(s)	984
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	3 cut(s)	184, 1004, 1067
BmeT110I	CYCGRG	1 cut(s)	829
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	3 cut(s)	184, 1004, 1067
BmsI	GCATC	2 cut(s)	982, 1045
BpiI	GAAGAC	2 cut(s)	575, 935
BpuEI	CTTGAG	1 cut(s)	551
BpuMI	CCSGG	1 cut(s)	1004
BsaAI	YACGTR	1 cut(s)	74
BsaJI	CCNNGG	4 cut(s)	64, 292, 367, 397
BsaWI	WCCGGW	3 cut(s)	96, 271, 317
BsaXI	ACNNNNNCTCC	4 cut(s)	801, 831, 1020, 1050
Bsc4I	CCNNNNNNNGG	4 cut(s)	183, 264, 497, 986
Bse1I	ACTGG	2 cut(s)	159, 218
BseAI	TCCGGA	2 cut(s)	96, 317
BseBI	CCWGG	2 cut(s)	184, 1067
BseDI	CCNNGG	4 cut(s)	64, 292, 367, 397
BseGI	GGATG	2 cut(s)	724, 920
BseLI	CCNNNNNNNGG	4 cut(s)	183, 264, 497, 986
BseNI	ACTGG	2 cut(s)	159, 218
BseRI	GAGGAG	1 cut(s)	617
BseSI	GKGCMC	3 cut(s)	79, 94, 836
BseXI	GCAGC	1 cut(s)	209
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	2 cut(s)	357, 656
BsiHKAI	GWGCWC	2 cut(s)	79, 567
BsiHKCI	CYCGRG	1 cut(s)	829
BsiSI	CCGG	4 cut(s)	97, 272, 318, 1004
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	4 cut(s)	183, 264, 497, 986
BsmAI	GTCTC	1 cut(s)	984
BsmBI	CGTCTC	1 cut(s)	984
BsmFI	GGGAC	1 cut(s)	87
BsmI	GAATGC	2 cut(s)	751, 1167
BsnI	GGCC	2 cut(s)	357, 656
BsoBI	CYCGRG	1 cut(s)	829
Bsp1286I	GDGCHC	4 cut(s)	79, 94, 567, 836
Bsp13I	TCCGGA	2 cut(s)	96, 317
Bsp1407I	TGTACA	1 cut(s)	685
Bsp143I	GATC	8 cut(s)	225, 238, 523, 610, 660, 781, 938, 1047
BspACI	CCGC	4 cut(s)	265, 367, 369, 441
BspANI	GGCC	2 cut(s)	357, 656
BspEI	TCCGGA	2 cut(s)	96, 317
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	420
BspPI	GGATC	5 cut(s)	220, 233, 518, 776, 946
BsrGI	TGTACA	1 cut(s)	685
BsrI	ACTGG	2 cut(s)	159, 218
BssECI	CCNNGG	4 cut(s)	64, 292, 367, 397
BssMI	GATC	8 cut(s)	225, 238, 523, 610, 660, 781, 938, 1047
BssT1I	CCWWGG	1 cut(s)	397
Bst2UI	CCWGG	2 cut(s)	184, 1067
Bst4CI	ACNGT	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	210
BstAUI	TGTACA	1 cut(s)	685
BstBAI	YACGTR	1 cut(s)	74
BstC8I	GCNNGC	3 cut(s)	134, 172, 202
BstDSI	CCRYGG	3 cut(s)	64, 292, 367
BstEII	GGTNACC	2 cut(s)	267, 1076
BstF5I	GGATG	2 cut(s)	724, 920
BstFNI	CGCG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	8 cut(s)	228, 241, 526, 613, 663, 784, 941, 1050
BstMAI	GTCTC	1 cut(s)	984
BstMBI	GATC	8 cut(s)	225, 238, 523, 610, 660, 781, 938, 1047
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 210
BstNI	CCWGG	2 cut(s)	184, 1067
BstNSI	RCATGY	1 cut(s)	213
BstPI	GGTNACC	2 cut(s)	267, 1076
BstSCI	CCNGG	3 cut(s)	182, 1002, 1065
BstSLI	GKGCMC	3 cut(s)	79, 94, 836
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	209
BstV2I	GAAGAC	2 cut(s)	575, 935
BstX2I	RGATCY	2 cut(s)	781, 938
BstXI	CCANNNNNNTGG	1 cut(s)	1073
BstYI	RGATCY	2 cut(s)	781, 938
BsuRI	GGCC	2 cut(s)	357, 656
BtgI	CCRYGG	3 cut(s)	64, 292, 367
BtsCI	GGATG	2 cut(s)	724, 920
BtsI	GCAGTG	2 cut(s)	197, 587
BtsIMutI	CAGTG	3 cut(s)	197, 225, 587
Cac8I	GCNNGC	3 cut(s)	134, 172, 202
CfoI	GCGC	1 cut(s)	197
Cfr42I	CCGCGG	1 cut(s)	370
CseI	GACGC	2 cut(s)	196, 1170
Csp6I	GTAC	3 cut(s)	71, 686, 1199
CspCI	CAANNNNNGTGG	2 cut(s)	269, 304
CviAII	CATG	5 cut(s)	210, 629, 633, 1039, 1084
CviQI	GTAC	3 cut(s)	71, 686, 1199
DpnI	GATC	8 cut(s)	227, 240, 525, 612, 662, 783, 940, 1049
DpnII	GATC	8 cut(s)	225, 238, 523, 610, 660, 781, 938, 1047
DraI	TTTAAA	1 cut(s)	474
DraIII	CACNNNGTG	1 cut(s)	593
DrdI	GACNNNNNNGTC	1 cut(s)	392
DseDI	GACNNNNNNGTC	1 cut(s)	392
EaeI	YGGCCR	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	397
Eco24I	GRGCYC	1 cut(s)	567
Eco53kI	GAGCTC	1 cut(s)	565
Eco88I	CYCGRG	1 cut(s)	829
Eco91I	GGTNACC	2 cut(s)	267, 1076
EcoICRI	GAGCTC	1 cut(s)	565
EcoO65I	GGTNACC	2 cut(s)	267, 1076
EcoRI	GAATTC	1 cut(s)	998
EcoRII	CCWGG	2 cut(s)	182, 1065
EcoT14I	CCWWGG	1 cut(s)	397
EcoT22I	ATGCAT	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	397
Esp3I	CGTCTC	1 cut(s)	984
FaeI	CATG	5 cut(s)	213, 632, 636, 1042, 1087
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	5 cut(s)	209, 628, 632, 1038, 1083
FbaI	TGATCA	2 cut(s)	610, 1047
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	2 cut(s)	731, 927
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	50
FspI	TGCGCA	1 cut(s)	196
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	357, 656
HapII	CCGG	4 cut(s)	97, 272, 318, 1004
HgaI	GACGC	2 cut(s)	196, 1170
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	5 cut(s)	213, 632, 636, 1042, 1087
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HinfI	GANTC	6 cut(s)	4, 100, 444, 827, 1105, 1153
HpaII	CCGG	4 cut(s)	97, 272, 318, 1004
HphI	GGTGA	6 cut(s)	53, 550, 605, 901, 1070, 1162
Hpy166II	GTNNAC	4 cut(s)	71, 77, 145, 795
Hpy188I	TCNGA	5 cut(s)	243, 786, 1052, 1123, 1146
Hpy188III	TCNNGA	4 cut(s)	97, 318, 422, 902
Hpy8I	GTNNAC	4 cut(s)	71, 77, 145, 795
Hpy99I	CGWCG	3 cut(s)	119, 356, 452
HpyAV	CCTTC	2 cut(s)	115, 1019
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4IV	ACGT	7 cut(s)	73, 114, 147, 389, 459, 993, 1173
HpyCH4V	TGCA	7 cut(s)	77, 204, 330, 632, 640, 973, 1058
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 210
HpySE526I	ACGT	7 cut(s)	73, 114, 147, 389, 459, 993, 1173
Hsp92II	CATG	5 cut(s)	213, 632, 636, 1042, 1087
HspAI	GCGC	1 cut(s)	195
Kpn2I	TCCGGA	2 cut(s)	96, 317
Ksp22I	TGATCA	2 cut(s)	610, 1047
KspI	CCGCGG	1 cut(s)	370
Kzo9I	GATC	8 cut(s)	225, 238, 523, 610, 660, 781, 938, 1047
LmnI	GCTCC	1 cut(s)	1042
Lsp1109I	GCAGC	1 cut(s)	209
LweI	GCATC	2 cut(s)	982, 1045
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	7 cut(s)	73, 114, 147, 389, 459, 993, 1173
MaeIII	GTNAC	4 cut(s)	267, 299, 959, 1076
MalI	GATC	8 cut(s)	227, 240, 525, 612, 662, 783, 940, 1049
MboI	GATC	8 cut(s)	225, 238, 523, 610, 660, 781, 938, 1047
MboII	GAAGA	5 cut(s)	10, 20, 100, 575, 940
MflI	RGATCY	2 cut(s)	781, 938
MhlI	GDGCHC	4 cut(s)	79, 94, 567, 836
MluCI	AATT	6 cut(s)	331, 374, 946, 998, 1013, 1126
MlyI	GAGTC	3 cut(s)	109, 438, 821
Mph1103I	ATGCAT	1 cut(s)	634
MroI	TCCGGA	2 cut(s)	96, 317
MroXI	GAANNNNTTC	1 cut(s)	1091
MseI	TTAA	4 cut(s)	473, 548, 1100, 1213
MslI	CAYNNNNRTG	4 cut(s)	66, 515, 627, 675
MspA1I	CMGCKG	1 cut(s)	369
MspI	CCGG	4 cut(s)	97, 272, 318, 1004
MspR9I	CCNGG	3 cut(s)	184, 1004, 1067
Mva1269I	GAATGC	2 cut(s)	751, 1167
MvaI	CCWGG	2 cut(s)	184, 1067
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	2 cut(s)	201, 210
NciI	CCSGG	1 cut(s)	1004
NdeII	GATC	8 cut(s)	225, 238, 523, 610, 660, 781, 938, 1047
NlaIII	CATG	5 cut(s)	213, 632, 636, 1042, 1087
NlaIV	GGNNCC	1 cut(s)	420
NmeAIII	GCCGAG	1 cut(s)	682
NmuCI	GTSAC	1 cut(s)	1076
NsbI	TGCGCA	1 cut(s)	196
NsiI	ATGCAT	1 cut(s)	634
NspI	RCATGY	1 cut(s)	213
OliI	CACNNNNGTG	2 cut(s)	66, 675
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PctI	GAATGC	2 cut(s)	751, 1167
PdmI	GAANNNNTTC	1 cut(s)	1091
PfeI	GAWTC	2 cut(s)	1105, 1153
PflMI	CCANNNNNTGG	2 cut(s)	183, 497
PfoI	TCCNGGA	1 cut(s)	1002
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	3 cut(s)	108, 438, 821
PpsI	GAGTC	3 cut(s)	108, 438, 821
Ppu21I	YACGTR	1 cut(s)	74
Psp124BI	GAGCTC	1 cut(s)	567
Psp6I	CCWGG	2 cut(s)	182, 1065
PspEI	GGTNACC	2 cut(s)	267, 1076
PspGI	CCWGG	2 cut(s)	182, 1065
PspN4I	GGNNCC	1 cut(s)	420
PsuI	RGATCY	2 cut(s)	781, 938
RsaI	GTAC	3 cut(s)	72, 687, 1200
RsaNI	GTAC	3 cut(s)	71, 686, 1199
RseI	CAYNNNNRTG	4 cut(s)	66, 515, 627, 675
SacI	GAGCTC	1 cut(s)	567
SacII	CCGCGG	1 cut(s)	370
SaqAI	TTAA	4 cut(s)	473, 548, 1100, 1213
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	8 cut(s)	225, 238, 523, 610, 660, 781, 938, 1047
SchI	GAGTC	3 cut(s)	109, 438, 821
ScrFI	CCNGG	3 cut(s)	184, 1004, 1067
SduI	GDGCHC	4 cut(s)	79, 94, 567, 836
SfaNI	GCATC	2 cut(s)	982, 1045
Sfr303I	CCGCGG	1 cut(s)	370
SgrBI	CCGCGG	1 cut(s)	370
SmiMI	CAYNNNNRTG	4 cut(s)	66, 515, 627, 675
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	6 cut(s)	331, 374, 946, 998, 1013, 1126
SsiI	CCGC	4 cut(s)	265, 367, 369, 441
SspMI	CTAG	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	567
StyD4I	CCNGG	3 cut(s)	182, 1002, 1065
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	1 cut(s)	68
TaiI	ACGT	7 cut(s)	76, 117, 150, 392, 462, 996, 1176
TaqI	TCGA	6 cut(s)	117, 162, 237, 351, 447, 976
TasI	AATT	6 cut(s)	331, 374, 946, 998, 1013, 1126
TatI	WGTACW	1 cut(s)	685
TfiI	GAWTC	2 cut(s)	1105, 1153
Tru1I	TTAA	4 cut(s)	473, 548, 1100, 1213
Tru9I	TTAA	4 cut(s)	473, 548, 1100, 1213
TscAI	CASTG	3 cut(s)	197, 225, 594
TseFI	GTSAC	1 cut(s)	1076
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	1076
TspDTI	ATGAA	5 cut(s)	10, 533, 941, 1007, 1100
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	3 cut(s)	197, 225, 594
Van91I	CCANNNNNTGG	2 cut(s)	183, 497
VneI	GTGCAC	1 cut(s)	75
XapI	RAATTY	2 cut(s)	998, 1013
XceI	RCATGY	1 cut(s)	213
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	1091
XspI	CTAG	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.