Rroxscaffold_6G00429720

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
49932086 .. 49933341
1256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00429720.1

Sequence Viewer

Length: 1194 bp
ATGGCCCAAGCTCAGAGTTTCACTATATCAACGAGATTGACCAACACGAGTACTACTAGTGTTTTCAGATACAAACTTCGTCAAAAGCTCCTGTCCCAAACCGCAAAAGCTCTCCAGGCATGGTCTTCCCTGCTCTCCAGGCATGGTCTTGATCCAGGCATGGTCTTCCCTGCTCTCCCGTCCGGCATGGTCTACGTAAGCGCCCACATTGGGACTCCTCCACTCACCATCAACCTTGCTTTGGACACCCTCTTTCCATTCACTTGGGTTCAGTCAGTTGATTGCCAAAAATGCTTCAACGTTTCACCCCCATTTTCCAGCTTTGACCCCAAGAAGTCCACCACTTTCCAACTTCTCCCTCCAACCAACGCCACCATCTGCTCGCCACCTCTCGCTCATCCGTCCGCGGTTCCATTTGTTGTCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCAACTAATCTAATCGCATTCGGCTGTGGGATCCGCTCCATGGTGGACTTCGATGGGGGGTGGGGGTACAACCCTATCGGAGGGATGATAGGGTTAGGAAAAGGGCACCCTTCCAGCATTGTAAGCCAACTAGGCTCCGACCGTTTCTCCTACTGCCTTCCCGGCCGGTCTCATTCACACTCCGGCCAGCCAACCCTCAACTTCGGCTCTGATGCCTTTATTGATGCTAGTGCTACAAATGTACAAACAACTCCAATCTCCGGCCACGAGTACTACAATTACCTCAACTTAACCACCATAACTGTAAACGGAGATGTCGTGTACATCATGCCAGAAACCAGCTCTAGAGCAAAGCTTGTGCTCTTGGACACAGGAGAACCAACCACCTGGTTTGTTGAGGACGCCTACTATGGTCTGCAAGACGGCCTTGTGAGGTACTTTGCAGAGACTTATGGTTGGAAAGAGCCCAAGATAGTTTATCCTAGTGTTTACGATTTGTGTTACGATCTTCCGGCTAATATGTCTAGCATCGTTTTCCCAAAAGTTGCTATACAGTTCCTAGGTGGGGCTAGTTTAGATCTGCAGGATGCTTTTAAGATCTTCCCAGATGAGCATCAGTTTTGCATGGTCTTAAAGGAAGGTGCTCCAAACGTAGTAGGTGTTTACCAGCAGATGGGTTATAGATTCTTGTTTGATCTCGCTCAGTCCAAGCTCTCTTTTGCTCCTAACATGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

397

Amino Acids

43.26

Weight (kDa)

6.22

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 65 - 124 6.2e-06 Xylanase inhibitor N-terminal
TAXi_N PF14543 147 - 222 1.6e-07 Xylanase inhibitor N-terminal
TAXi_C PF14541 246 - 393 9.6e-17 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 561
AccB7I CCANNNNNTGG 1 cut(s) 1129
AccBSI CCGCTC 1 cut(s) 492
AccI GTMKAC 1 cut(s) 192
AccII CGCG 1 cut(s) 407
AciI CCGC 4 cut(s) 102, 405, 407, 490
AclI AACGTT 1 cut(s) 300
AclWI GGATC 3 cut(s) 146, 481, 494
AcoI YGGCCR 3 cut(s) 619, 640, 718
AcyI GRCGYC 1 cut(s) 858
AfaI GTAC 6 cut(s) 52, 524, 699, 728, 779, 893
AfiI CCNNNNNNNGG 7 cut(s) 210, 241, 496, 536, 716, 1021, 1129
AflIII ACRYGT 1 cut(s) 1185
AgsI TTSAA 2 cut(s) 298, 459
AhlI ACTAGT 1 cut(s) 56
AjnI CCWGG 4 cut(s) 114, 137, 154, 842
AluBI AGCT 7 cut(s) 11, 88, 110, 321, 798, 811, 1168
AluI AGCT 7 cut(s) 11, 88, 110, 321, 798, 811, 1168
Alw21I GWGCWC 2 cut(s) 819, 1102
Alw26I GTCTC 3 cut(s) 427, 630, 896
AlwI GGATC 3 cut(s) 146, 481, 494
AoxI GGCC 5 cut(s) 3, 619, 640, 718, 880
AspA2I CCTAGG 1 cut(s) 1015
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 618
AsuHPI GGTGA 2 cut(s) 217, 297
AvrII CCTAGG 1 cut(s) 1015
BaeGI GKGCMC 1 cut(s) 564
BamHI GGATCC 1 cut(s) 486
BanI GGYRCC 1 cut(s) 561
BanII GRGCYC 1 cut(s) 924
BauI CACGAG 2 cut(s) 46, 722
BbsI GAAGAC 2 cut(s) 117, 157
Bbv12I GWGCWC 2 cut(s) 819, 1102
BccI CCATC 4 cut(s) 236, 383, 503, 1123
BceAI ACGGC 1 cut(s) 895
BciT130I CCWGG 4 cut(s) 116, 139, 156, 844
BcnI CCSGG 1 cut(s) 618
BcoDI GTCTC 3 cut(s) 427, 630, 896
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 8 cut(s) 57, 587, 684, 801, 939, 981, 1016, 1026
BfmI CTRYAG 1 cut(s) 1037
BfoI RGCGCY 1 cut(s) 204
BglI GCCNNNNNGGC 2 cut(s) 588, 618
BglII AGATCT 2 cut(s) 1033, 1053
BlnI CCTAGG 1 cut(s) 1015
BmcAI AGTACT 2 cut(s) 52, 728
Bme1390I CCNGG 5 cut(s) 116, 139, 156, 618, 844
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 4 cut(s) 411, 488, 563, 592
BmrFI CCNGG 5 cut(s) 116, 139, 156, 618, 844
BmsI GCATC 5 cut(s) 658, 670, 993, 1033, 1078
BpiI GAAGAC 2 cut(s) 117, 157
BpmI CTGGAG 2 cut(s) 98, 121
BpuMI CCSGG 1 cut(s) 618
BsaAI YACGTR 1 cut(s) 196
BsaBI GATNNNNATC 1 cut(s) 1068
BsaHI GRCGYC 1 cut(s) 858
BsaI GGTCTC 1 cut(s) 630
BsaJI CCNNGG 3 cut(s) 405, 495, 1015
BsaXI ACNNNNNCTCC 4 cut(s) 587, 617, 759, 789
Bsc4I CCNNNNNNNGG 7 cut(s) 210, 241, 496, 536, 716, 1021, 1129
Bse118I RCCGGY 1 cut(s) 621
Bse8I GATNNNNATC 1 cut(s) 1068
BseBI CCWGG 4 cut(s) 116, 139, 156, 844
BseDI CCNNGG 3 cut(s) 405, 495, 1015
BseGI GGATG 3 cut(s) 397, 546, 1048
BseJI GATNNNNATC 1 cut(s) 1068
BseLI CCNNNNNNNGG 7 cut(s) 210, 241, 496, 536, 716, 1021, 1129
BseMII CTCAG 2 cut(s) 26, 1172
BseRI GAGGAG 9 cut(s) 207, 421, 424, 427, 430, 433, 436, 439, 442
BseSI GKGCMC 1 cut(s) 564
BseX3I CGGCCG 1 cut(s) 619
Bsh1236I CGCG 1 cut(s) 407
Bsh1285I CGRYCG 2 cut(s) 598, 622
BshFI GGCC 5 cut(s) 5, 621, 642, 720, 882
BshNI GGYRCC 1 cut(s) 561
BsiEI CGRYCG 2 cut(s) 598, 622
BsiHKAI GWGCWC 2 cut(s) 819, 1102
BsiSI CCGG 6 cut(s) 183, 618, 622, 639, 717, 968
BslFI GGGAC 2 cut(s) 79, 226
BslI CCNNNNNNNGG 7 cut(s) 210, 241, 496, 536, 716, 1021, 1129
BsmAI GTCTC 3 cut(s) 427, 630, 896
BsmFI GGGAC 2 cut(s) 79, 226
BsmI GAATGC 1 cut(s) 473
BsnI GGCC 5 cut(s) 5, 621, 642, 720, 882
Bso31I GGTCTC 1 cut(s) 630
Bsp1286I GDGCHC 4 cut(s) 564, 819, 924, 1102
Bsp1407I TGTACA 2 cut(s) 697, 777
Bsp143I GATC 6 cut(s) 151, 486, 961, 1033, 1053, 1150
Bsp19I CCATGG 1 cut(s) 495
BspACI CCGC 4 cut(s) 102, 405, 407, 490
BspANI GGCC 5 cut(s) 5, 621, 642, 720, 882
BspCNI CTCAG 2 cut(s) 25, 1171
BspFNI CGCG 1 cut(s) 407
BspLI GGNNCC 4 cut(s) 411, 488, 563, 592
BspMAI CTGCAG 1 cut(s) 1041
BspPI GGATC 3 cut(s) 146, 481, 494
BspT107I GGYRCC 1 cut(s) 561
BspTNI GGTCTC 1 cut(s) 630
BsrBI CCGCTC 1 cut(s) 492
BsrFI RCCGGY 1 cut(s) 621
BsrGI TGTACA 2 cut(s) 697, 777
BssAI RCCGGY 1 cut(s) 621
BssECI CCNNGG 3 cut(s) 405, 495, 1015
BssMI GATC 6 cut(s) 151, 486, 961, 1033, 1053, 1150
BssNI GRCGYC 1 cut(s) 858
BssSI CACGAG 2 cut(s) 46, 722
BssT1I CCWWGG 2 cut(s) 495, 1015
Bst2BI CACGAG 2 cut(s) 46, 722
Bst2UI CCWGG 4 cut(s) 116, 139, 156, 844
Bst4CI ACNGT 3 cut(s) 599, 760, 1011
Bst6I CTCTTC 1 cut(s) 460
BstACI GRCGYC 1 cut(s) 858
BstAUI TGTACA 2 cut(s) 697, 777
BstBAI YACGTR 1 cut(s) 196
BstC8I GCNNGC 2 cut(s) 383, 644
BstDEI CTNAG 2 cut(s) 12, 1158
BstDSI CCRYGG 2 cut(s) 405, 495
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 3 cut(s) 397, 546, 1048
BstFNI CGCG 1 cut(s) 407
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 6 cut(s) 154, 489, 964, 1036, 1056, 1153
BstMAI GTCTC 3 cut(s) 427, 630, 896
BstMBI GATC 6 cut(s) 151, 486, 961, 1033, 1053, 1150
BstMCI CGRYCG 2 cut(s) 598, 622
BstMWI GCNNNNNNNGC 6 cut(s) 116, 139, 291, 579, 588, 618
BstNI CCWGG 4 cut(s) 116, 139, 156, 844
BstNSI RCATGY 1 cut(s) 1189
BstSCI CCNGG 5 cut(s) 114, 137, 154, 616, 842
BstSFI CTRYAG 1 cut(s) 1037
BstSLI GKGCMC 1 cut(s) 564
BstSNI TACGTA 1 cut(s) 196
BstUI CGCG 1 cut(s) 407
BstV2I GAAGAC 2 cut(s) 117, 157
BstX2I RGATCY 3 cut(s) 486, 1033, 1053
BstXI CCANNNNNNTGG 2 cut(s) 264, 843
BstYI RGATCY 3 cut(s) 486, 1033, 1053
BstZI CGGCCG 1 cut(s) 619
BsuRI GGCC 5 cut(s) 5, 621, 642, 720, 882
BtgI CCRYGG 2 cut(s) 405, 495
BtsCI GGATG 3 cut(s) 397, 546, 1048
Cac8I GCNNGC 2 cut(s) 383, 644
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 621
Cfr13I GGNCC 1 cut(s) 4
Cfr42I CCGCGG 1 cut(s) 408
CseI GACGC 1 cut(s) 866
CsiI ACCWGGT 1 cut(s) 842
Csp6I GTAC 6 cut(s) 51, 523, 698, 727, 778, 892
CspCI CAANNNNNGTGG 2 cut(s) 829, 864
CviAII CATG 8 cut(s) 120, 143, 160, 187, 496, 784, 1081, 1186
CviQI GTAC 6 cut(s) 51, 523, 698, 727, 778, 892
DdeI CTNAG 2 cut(s) 12, 1158
DpnI GATC 6 cut(s) 153, 488, 963, 1035, 1055, 1152
DpnII GATC 6 cut(s) 151, 486, 961, 1033, 1053, 1150
EaeI YGGCCR 3 cut(s) 619, 640, 718
EagI CGGCCG 1 cut(s) 619
Eam1104I CTCTTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 460
EclXI CGGCCG 1 cut(s) 619
Eco105I TACGTA 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 495, 1015
Eco24I GRGCYC 1 cut(s) 924
Eco31I GGTCTC 1 cut(s) 630
Eco52I CGGCCG 1 cut(s) 619
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoRII CCWGG 4 cut(s) 114, 137, 154, 842
EcoT14I CCWWGG 2 cut(s) 495, 1015
EcoT38I GRGCYC 1 cut(s) 924
ErhI CCWWGG 2 cut(s) 495, 1015
FaeI CATG 8 cut(s) 123, 146, 163, 190, 499, 787, 1084, 1189
FalI AAGNNNNNCTT 2 cut(s) 867, 899
FaqI GGGAC 2 cut(s) 79, 226
FatI CATG 8 cut(s) 119, 142, 159, 186, 495, 783, 1080, 1185
FblI GTMKAC 1 cut(s) 192
FokI GGATG 3 cut(s) 384, 553, 1055
FriOI GRGCYC 1 cut(s) 924
FspBI CTAG 8 cut(s) 57, 587, 684, 801, 939, 981, 1016, 1026
GlaI GCGC 1 cut(s) 202
GsuI CTGGAG 2 cut(s) 98, 121
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 5 cut(s) 5, 621, 642, 720, 882
HapII CCGG 6 cut(s) 183, 618, 622, 639, 717, 968
HgaI GACGC 1 cut(s) 866
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 858
Hin1II CATG 8 cut(s) 123, 146, 163, 190, 499, 787, 1084, 1189
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HindIII AAGCTT 1 cut(s) 809
HinfI GANTC 2 cut(s) 214, 1140
HpaII CCGG 6 cut(s) 183, 618, 622, 639, 717, 968
HphI GGTGA 2 cut(s) 217, 297
Hpy166II GTNNAC 7 cut(s) 193, 339, 502, 763, 778, 946, 1120
Hpy188I TCNGA 5 cut(s) 15, 68, 536, 595, 667
Hpy188III TCNNGA 2 cut(s) 149, 801
Hpy8I GTNNAC 7 cut(s) 193, 339, 502, 763, 778, 946, 1120
HpyAV CCTTC 3 cut(s) 576, 623, 1088
HpyCH4III ACNGT 3 cut(s) 599, 760, 1011
HpyCH4IV ACGT 3 cut(s) 195, 300, 1107
HpyCH4V TGCA 4 cut(s) 874, 899, 1039, 1080
HpyF10VI GCNNNNNNNGC 6 cut(s) 116, 139, 291, 579, 588, 618
HpyF3I CTNAG 2 cut(s) 12, 1158
HpySE526I ACGT 3 cut(s) 195, 300, 1107
Hsp92I GRCGYC 1 cut(s) 858
Hsp92II CATG 8 cut(s) 123, 146, 163, 190, 499, 787, 1084, 1189
HspAI GCGC 1 cut(s) 201
KspI CCGCGG 1 cut(s) 408
Kzo9I GATC 6 cut(s) 151, 486, 961, 1033, 1053, 1150
LmnI GCTCC 5 cut(s) 93, 497, 596, 1105, 1183
LweI GCATC 5 cut(s) 658, 670, 993, 1033, 1078
MabI ACCWGGT 1 cut(s) 842
MaeI CTAG 8 cut(s) 57, 587, 684, 801, 939, 981, 1016, 1026
MaeII ACGT 3 cut(s) 195, 300, 1107
MaeIII GTNAC 1 cut(s) 956
MalI GATC 6 cut(s) 153, 488, 963, 1035, 1055, 1152
MbiI CCGCTC 1 cut(s) 492
MboI GATC 6 cut(s) 151, 486, 961, 1033, 1053, 1150
MboII GAAGA 5 cut(s) 117, 157, 447, 956, 1048
MflI RGATCY 3 cut(s) 486, 1033, 1053
MhlI GDGCHC 4 cut(s) 564, 819, 924, 1102
MluCI AATT 1 cut(s) 733
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 4 cut(s) 373, 386, 618, 893
MseI TTAA 4 cut(s) 746, 1050, 1088, 1192
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 6 cut(s) 183, 618, 622, 639, 717, 968
MspR9I CCNGG 5 cut(s) 116, 139, 156, 618, 844
Mva1269I GAATGC 1 cut(s) 473
MvaI CCWGG 4 cut(s) 116, 139, 156, 844
MvnI CGCG 1 cut(s) 407
MwoI GCNNNNNNNGC 6 cut(s) 116, 139, 291, 579, 588, 618
NciI CCSGG 1 cut(s) 618
NcoI CCATGG 1 cut(s) 495
NdeII GATC 6 cut(s) 151, 486, 961, 1033, 1053, 1150
NlaIII CATG 8 cut(s) 123, 146, 163, 190, 499, 787, 1084, 1189
NlaIV GGNNCC 4 cut(s) 411, 488, 563, 592
NspI RCATGY 1 cut(s) 1189
PciI ACATGT 1 cut(s) 1185
PcsI WCGNNNNNNNCGW 1 cut(s) 771
PctI GAATGC 1 cut(s) 473
PfeI GAWTC 1 cut(s) 1140
PflMI CCANNNNNTGG 1 cut(s) 1129
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Ppu21I YACGTR 1 cut(s) 196
PscI ACATGT 1 cut(s) 1185
Psp1406I AACGTT 1 cut(s) 300
Psp6I CCWGG 4 cut(s) 114, 137, 154, 842
PspGI CCWGG 4 cut(s) 114, 137, 154, 842
PspN4I GGNNCC 4 cut(s) 411, 488, 563, 592
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 1041
PsuI RGATCY 3 cut(s) 486, 1033, 1053
RsaI GTAC 6 cut(s) 52, 524, 699, 728, 779, 893
RsaNI GTAC 6 cut(s) 51, 523, 698, 727, 778, 892
SacII CCGCGG 1 cut(s) 408
SaqAI TTAA 4 cut(s) 746, 1050, 1088, 1192
Sau3AI GATC 6 cut(s) 151, 486, 961, 1033, 1053, 1150
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 2 cut(s) 52, 728
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 5 cut(s) 116, 139, 156, 618, 844
SduI GDGCHC 4 cut(s) 564, 819, 924, 1102
SexAI ACCWGGT 1 cut(s) 842
SfaNI GCATC 5 cut(s) 658, 670, 993, 1033, 1078
SfcI CTRYAG 1 cut(s) 1037
Sfr303I CCGCGG 1 cut(s) 408
SgrBI CCGCGG 1 cut(s) 408
SnaBI TACGTA 1 cut(s) 196
SpeI ACTAGT 1 cut(s) 56
Sse9I AATT 1 cut(s) 733
SsiI CCGC 4 cut(s) 102, 405, 407, 490
SspMI CTAG 8 cut(s) 57, 587, 684, 801, 939, 981, 1016, 1026
StyD4I CCNGG 5 cut(s) 114, 137, 154, 616, 842
StyI CCWWGG 2 cut(s) 495, 1015
TaaI ACNGT 3 cut(s) 599, 760, 1011
TaiI ACGT 3 cut(s) 198, 303, 1110
TaqI TCGA 1 cut(s) 507
TasI AATT 1 cut(s) 733
TatI WGTACW 4 cut(s) 50, 697, 726, 777
TfiI GAWTC 1 cut(s) 1140
Tru1I TTAA 4 cut(s) 746, 1050, 1088, 1192
Tru9I TTAA 4 cut(s) 746, 1050, 1088, 1192
TspGWI ACGGA 2 cut(s) 390, 780
Van91I CCANNNNNTGG 1 cut(s) 1129
XagI CCTNNNNNAGG 1 cut(s) 534
XbaI TCTAGA 1 cut(s) 800
XceI RCATGY 1 cut(s) 1189
XmaJI CCTAGG 1 cut(s) 1015
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 8 cut(s) 57, 587, 684, 801, 939, 981, 1016, 1026
ZrmI AGTACT 2 cut(s) 52, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.