Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005185

Physical Location & Seq

Genomic Coordinates Reverse (-)

10892625 .. 10893671

Gene Structure 1047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g18970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTTCCCCAATCAGATCAACTTCGCTGATGGCTCTTTCACTAGAGGTGGCTTTGCACTAGACGTGTTCTTTTTCTTGGATGAAAATGAGCAAAAACAAGCCATCCAAAATGTGGCATTTGGTCTAGGAATCTACAATAAGATGGACTTCTCGGATCTTTTTCATAGCCAACCAAATCTGATTTCAGGAATTCTCGGATTAGGGAAGGGTGATCCTACTAGTATCATACAGCAGTTGAGGTCGATCACCCTCTTAAAATTATCCTACTGCCTTCCATTACGGTTTGAGGACCAAGCACTGTTACATTTCGGTGATGATGCTCAACTTACAGGTCTTAATGTACGTAGCACACGGTTTTTGGGAGACCAAAGTAGCCATTATTTCTTGAAACTGAATGGTATAAGTTTAAACGGGGCTCTTCTCCAAATCGATCCAAACATGTTCATGGCCAGTGGAGGAATGGTCATCGATTCCGGAGCGCCCTACAGTTACATTGTTGAGGAGGCTTTCTTGATCGTGAAGCAAGCTGTGGCGGAGTTAATAAGTACGGATGGGAACCATTGGAGAAGAGGAGCCGACCTTGAGTTGGAGAGAAGAACACTGCTCGTGGACATGGAACAACACGATGAGGTTTGCATGGCAATTTTTCAAATGCCTAGAGGCGGTCTAAACGTTTTGGGCGCGGCTCAGCAAGCAAATCACAGGTTCTTGTTCGATGCTAGTGCGTCCACATTGTCATTTGCTCCAGAACAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Asp TAXi_C TAXi_N

Protein Analysis

253

Amino Acids

27.92

Weight (kDa)

4.86

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	6 - 105	4.1e-10	Xylanase inhibitor N-terminal
TAXi_C	PF14541	126 - 183	1.1e-08	Xylanase inhibitor C-terminal
TAXi_C	PF14541	190 - 248	3.3e-08	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005185)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34990 FvH4_3g35000 FvH4_5g18970 FvH4_6g04130 FvH4_6g08260
malus_domestica	MD02G1129300.v1.1 MD04G1217500.v1.1 MD12G1123700.v1.1 MD12G1232300.v1.1
prunus_persica	Prupe.5G037200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0452701 RchiOBHm_Chr3g0452711
rosa_laevigata	RLG00000000901 RLG00000025573
rosa_roxburghii	Rroxscaffold_3G00222790 Rroxscaffold_6G00429720
rosa_rugosa	Rorug02G0642700 Rorug02G0642800 Rorug07G0314700
rosa_samantha	Rh3BG047400 Rh3BG047500 Rh3CG045900 Rh3CG046000 Rh3DG046200 Rh3DG046300 Rh7AG470200 Rh7AG470300 Rh7BG440300
rosa_wichuraiana	Rw3G003510 Rw3G003520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccII	CGCG	1 cut(s)	683
AccIII	TCCGGA	1 cut(s)	473
AciI	CCGC	3 cut(s)	533, 663, 683
AclI	AACGTT	1 cut(s)	672
AclWI	GGATC	3 cut(s)	162, 206, 425
AcoI	YGGCCR	1 cut(s)	447
AcsI	RAATTY	1 cut(s)	189
AfaI	GTAC	2 cut(s)	342, 547
AfiI	CCNNNNNNNGG	3 cut(s)	112, 586, 662
AflIII	ACRYGT	2 cut(s)	63, 438
AgsI	TTSAA	2 cut(s)	388, 650
AhlI	ACTAGT	1 cut(s)	218
AjiI	CACGTC	1 cut(s)	64
AjuI	GAANNNNNNNTTGG	2 cut(s)	166, 198
AluBI	AGCT	1 cut(s)	527
AluI	AGCT	1 cut(s)	527
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	3 cut(s)	162, 206, 425
Aor13HI	TCCGGA	1 cut(s)	473
AoxI	GGCC	1 cut(s)	447
ApoI	RAATTY	1 cut(s)	189
AspLEI	GCGC	2 cut(s)	481, 683
AspS9I	GGNCC	1 cut(s)	289
AsuHPI	GGTGA	3 cut(s)	221, 238, 323
AvaII	GGWCC	1 cut(s)	289
BalI	TGGCCA	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	418
BauI	CACGAG	1 cut(s)	605
BccI	CCATC	4 cut(s)	23, 110, 136, 545
BcgI	CGANNNNNNTGC	2 cut(s)	704, 738
BcoDI	GTCTC	1 cut(s)	357
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	6 cut(s)	42, 59, 125, 219, 657, 720
BfmI	CTRYAG	1 cut(s)	484
BfoI	RGCGCY	1 cut(s)	482
BisI	GCNGC	1 cut(s)	684
BlpI	GCTNAGC	1 cut(s)	687
BlsI	GCNGC	1 cut(s)	685
Bme18I	GGWCC	1 cut(s)	289
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	2 cut(s)	557, 574
BmsI	GCATC	2 cut(s)	307, 706
BpmI	CTGGAG	1 cut(s)	729
Bpu1102I	GCTNAGC	1 cut(s)	687
BpuEI	CTTGAG	1 cut(s)	602
Bsa29I	ATCGAT	2 cut(s)	429, 468
BsaAI	YACGTR	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	357
BsaWI	WCCGGW	1 cut(s)	473
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 586, 662
Bse1I	ACTGG	1 cut(s)	450
BseAI	TCCGGA	1 cut(s)	473
BseCI	ATCGAT	2 cut(s)	429, 468
BseGI	GGATG	3 cut(s)	85, 102, 556
BseLI	CCNNNNNNNGG	3 cut(s)	112, 586, 662
BseMII	CTCAG	1 cut(s)	701
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	2 cut(s)	515, 585
Bsh1236I	CGCG	1 cut(s)	683
BshFI	GGCC	1 cut(s)	449
BshVI	ATCGAT	2 cut(s)	429, 468
BsiSI	CCGG	1 cut(s)	474
BslI	CCNNNNNNNGG	3 cut(s)	112, 586, 662
BsmAI	GTCTC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	449
Bso31I	GGTCTC	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp13I	TCCGGA	1 cut(s)	473
Bsp143I	GATC	6 cut(s)	15, 154, 211, 243, 430, 513
Bsp1720I	GCTNAGC	1 cut(s)	687
BspACI	CCGC	3 cut(s)	533, 663, 683
BspANI	GGCC	1 cut(s)	449
BspCNI	CTCAG	1 cut(s)	700
BspDI	ATCGAT	2 cut(s)	429, 468
BspEI	TCCGGA	1 cut(s)	473
BspFNI	CGCG	1 cut(s)	683
BspLI	GGNNCC	2 cut(s)	557, 574
BspPI	GGATC	3 cut(s)	162, 206, 425
BspQI	GCTCTTC	1 cut(s)	423
BspTNI	GGTCTC	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	450
BssMI	GATC	6 cut(s)	15, 154, 211, 243, 430, 513
BssSI	CACGAG	1 cut(s)	605
Bst2BI	CACGAG	1 cut(s)	605
Bst4CI	ACNGT	4 cut(s)	282, 300, 354, 488
Bst6I	CTCTTC	2 cut(s)	423, 562
BstBAI	YACGTR	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	525, 693
BstDEI	CTNAG	1 cut(s)	687
BstF5I	GGATG	3 cut(s)	85, 102, 556
BstFNI	CGCG	1 cut(s)	683
BstH2I	RGCGCY	1 cut(s)	482
BstHHI	GCGC	2 cut(s)	481, 683
BstKTI	GATC	6 cut(s)	18, 157, 214, 246, 433, 516
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	6 cut(s)	15, 154, 211, 243, 430, 513
BstMWI	GCNNNNNNNGC	1 cut(s)	692
BstNSI	RCATGY	1 cut(s)	442
BstSFI	CTRYAG	1 cut(s)	484
BstSNI	TACGTA	1 cut(s)	344
BstUI	CGCG	1 cut(s)	683
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
Bsu15I	ATCGAT	2 cut(s)	429, 468
BsuRI	GGCC	1 cut(s)	449
BsuTUI	ATCGAT	2 cut(s)	429, 468
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	3 cut(s)	85, 102, 556
BtsI	GCAGTG	1 cut(s)	599
BtsIMutI	CAGTG	3 cut(s)	296, 457, 599
Cac8I	GCNNGC	2 cut(s)	525, 693
CfoI	GCGC	2 cut(s)	481, 683
Cfr13I	GGNCC	1 cut(s)	289
ClaI	ATCGAT	2 cut(s)	429, 468
CseI	GACGC	1 cut(s)	714
Csp6I	GTAC	2 cut(s)	341, 546
CviAII	CATG	4 cut(s)	439, 445, 613, 637
CviQI	GTAC	2 cut(s)	341, 546
DdeI	CTNAG	1 cut(s)	687
DpnI	GATC	6 cut(s)	17, 156, 213, 245, 432, 515
DpnII	GATC	6 cut(s)	15, 154, 211, 243, 430, 513
DraI	TTTAAA	1 cut(s)	408
EaeI	YGGCCR	1 cut(s)	447
Eam1104I	CTCTTC	2 cut(s)	423, 562
EarI	CTCTTC	2 cut(s)	423, 562
EciI	GGCGGA	1 cut(s)	548
Eco105I	TACGTA	1 cut(s)	344
Eco24I	GRGCYC	1 cut(s)	418
Eco31I	GGTCTC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	289
EcoRI	GAATTC	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	418
FaeI	CATG	4 cut(s)	442, 448, 616, 640
FaiI	YATR	7 cut(s)	165, 227, 401, 440, 446, 614, 638
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FatI	CATG	4 cut(s)	438, 444, 612, 636
Fnu4HI	GCNGC	1 cut(s)	684
FokI	GGATG	3 cut(s)	89, 92, 563
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	1 cut(s)	684
FspBI	CTAG	6 cut(s)	42, 59, 125, 219, 657, 720
GlaI	GCGC	2 cut(s)	480, 682
GluI	GCNGC	1 cut(s)	684
GsuI	CTGGAG	1 cut(s)	729
HaeII	RGCGCY	1 cut(s)	482
HaeIII	GGCC	1 cut(s)	449
HapII	CCGG	1 cut(s)	474
HgaI	GACGC	1 cut(s)	714
HhaI	GCGC	2 cut(s)	481, 683
Hin1II	CATG	4 cut(s)	442, 448, 616, 640
Hin6I	GCGC	2 cut(s)	479, 681
HinP1I	GCGC	2 cut(s)	479, 681
HinfI	GANTC	2 cut(s)	129, 470
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	3 cut(s)	221, 238, 323
Hpy166II	GTNNAC	2 cut(s)	610, 729
Hpy188I	TCNGA	4 cut(s)	15, 154, 180, 197
Hpy188III	TCNNGA	6 cut(s)	186, 385, 474, 511, 517, 746
Hpy8I	GTNNAC	2 cut(s)	610, 729
HpyAV	CCTTC	2 cut(s)	199, 281
HpyCH4III	ACNGT	4 cut(s)	282, 300, 354, 488
HpyCH4IV	ACGT	3 cut(s)	63, 343, 672
HpyCH4V	TGCA	2 cut(s)	56, 636
HpyF10VI	GCNNNNNNNGC	1 cut(s)	692
HpyF3I	CTNAG	1 cut(s)	687
HpySE526I	ACGT	3 cut(s)	63, 343, 672
Hsp92II	CATG	4 cut(s)	442, 448, 616, 640
HspAI	GCGC	2 cut(s)	479, 681
Kpn2I	TCCGGA	1 cut(s)	473
Kzo9I	GATC	6 cut(s)	15, 154, 211, 243, 430, 513
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	3 cut(s)	476, 572, 748
LpnPI	CCDG	5 cut(s)	171, 315, 463, 487, 688
LweI	GCATC	2 cut(s)	307, 706
MaeI	CTAG	6 cut(s)	42, 59, 125, 219, 657, 720
MaeII	ACGT	3 cut(s)	63, 343, 672
MaeIII	GTNAC	2 cut(s)	300, 488
MalI	GATC	6 cut(s)	17, 156, 213, 245, 432, 515
MboI	GATC	6 cut(s)	15, 154, 211, 243, 430, 513
MboII	GAAGA	3 cut(s)	410, 579, 606
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	418
MlsI	TGGCCA	1 cut(s)	449
MluCI	AATT	3 cut(s)	189, 257, 642
MluNI	TGGCCA	1 cut(s)	449
MmeI	TCCRAC	1 cut(s)	567
Mox20I	TGGCCA	1 cut(s)	449
MroI	TCCGGA	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	449
MseI	TTAA	5 cut(s)	254, 336, 407, 539, 757
MslI	CAYNNNNRTG	2 cut(s)	309, 443
Msp20I	TGGCCA	1 cut(s)	449
MspI	CCGG	1 cut(s)	474
MssI	GTTTAAAC	1 cut(s)	408
MvnI	CGCG	1 cut(s)	683
MwoI	GCNNNNNNNGC	1 cut(s)	692
NdeII	GATC	6 cut(s)	15, 154, 211, 243, 430, 513
NlaIII	CATG	4 cut(s)	442, 448, 616, 640
NlaIV	GGNNCC	2 cut(s)	557, 574
NspI	RCATGY	1 cut(s)	442
PciI	ACATGT	1 cut(s)	438
PciSI	GCTCTTC	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	129, 470
PflMI	CCANNNNNTGG	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	685
PmeI	GTTTAAAC	1 cut(s)	408
Ppu21I	YACGTR	1 cut(s)	344
PscI	ACATGT	1 cut(s)	438
Psp1406I	AACGTT	1 cut(s)	672
PspN4I	GGNNCC	2 cut(s)	557, 574
PspPI	GGNCC	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	2 cut(s)	342, 547
RsaNI	GTAC	2 cut(s)	341, 546
RseI	CAYNNNNRTG	2 cut(s)	309, 443
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	5 cut(s)	254, 336, 407, 539, 757
SatI	GCNGC	1 cut(s)	684
Sau3AI	GATC	6 cut(s)	15, 154, 211, 243, 430, 513
Sau96I	GGNCC	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	418
SfaNI	GCATC	2 cut(s)	307, 706
SfcI	CTRYAG	1 cut(s)	484
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	2 cut(s)	309, 443
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
SnaBI	TACGTA	1 cut(s)	344
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	3 cut(s)	189, 257, 642
SsiI	CCGC	3 cut(s)	533, 663, 683
SspMI	CTAG	6 cut(s)	42, 59, 125, 219, 657, 720
TaaI	ACNGT	4 cut(s)	282, 300, 354, 488
TaiI	ACGT	3 cut(s)	66, 346, 675
TaqI	TCGA	4 cut(s)	242, 429, 468, 714
TasI	AATT	3 cut(s)	189, 257, 642
TauI	GCSGC	1 cut(s)	686
TfiI	GAWTC	2 cut(s)	129, 470
Tru1I	TTAA	5 cut(s)	254, 336, 407, 539, 757
Tru9I	TTAA	5 cut(s)	254, 336, 407, 539, 757
TscAI	CASTG	3 cut(s)	303, 457, 606
TspDTI	ATGAA	3 cut(s)	96, 152, 433
TspGWI	ACGGA	1 cut(s)	563
TspRI	CASTG	3 cut(s)	303, 457, 606
Van91I	CCANNNNNTGG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	289
XapI	RAATTY	1 cut(s)	189
XceI	RCATGY	1 cut(s)	442
XcmI	CCANNNNNNNNNTGG	2 cut(s)	109, 457
XspI	CTAG	6 cut(s)	42, 59, 125, 219, 657, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.