Rh3CG046000

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0005185
Physical Location & Seq
Reverse (-)
3081097 .. 3081750
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG046000.1

Sequence Viewer

Length: 654 bp
ATGATAGGGTTAGGAAAAGGGCACCCTTCCAGCATTGTAAGCCAACTAGGCTCCGACCGTTTCTCTTACTGCCTTCCCGGCCGGTCTGATTCACACTCCGGCCAGCCAACCCTCAATTTCGGCTCTGATGCCTTTATTGATGCTAGTGCTACAAATGTACAAACAACTCCAATCTCCGGCCACGAGTACTACAATTACCTCAACTTGACCACCATAACTGTAAACGGAGATGTCGTGTACATCATGCCAGAAACCAGCTCTAGAGCAAAGCTTGTGCTCTTGGACACAGGAGAACCAACCACCTGGTTTGTTGAGGACGCCTACTATGGTCTGCAAGACGGCCTTGTGAGGTACTTTGCAGATATTTACGGTTGGAAAGAGCCCAAGATAGTTTATCCTAGTGTTTACGATTTGTGTTACGATCTTCCGACTAATATGTCTAGCATCGTTTTCCCAAAAGTTGCTATACAGTTCCTAGGTGGGGCTAGTTTAGATCTGCAGGATGCTTTTAAGATCTTCCCGGATGAGCATCAGTTTTGCATGGTCTTAAAGGAAGGTGCTCCAAATGTGGTAGGTGTTTACCAGCAGATGGGTTATAGATTCTTGTTTGATCTCGCTCAGTCCAAGCTCTCTTTTGCTCCGAACATGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

217

Amino Acids

24.07

Weight (kDa)

4.71

Isoelectric Point (pI)

31.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 66 - 213 7.1e-17 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 436
AccB1I GGYRCC 1 cut(s) 21
AccB7I CCANNNNNTGG 1 cut(s) 589
AcoI YGGCCR 3 cut(s) 79, 100, 178
AcyI GRCGYC 1 cut(s) 318
AfaI GTAC 4 cut(s) 159, 188, 239, 353
AfiI CCNNNNNNNGG 3 cut(s) 176, 481, 589
AflIII ACRYGT 1 cut(s) 645
AjnI CCWGG 1 cut(s) 302
AluBI AGCT 3 cut(s) 258, 271, 628
AluI AGCT 3 cut(s) 258, 271, 628
Alw21I GWGCWC 2 cut(s) 279, 562
AoxI GGCC 4 cut(s) 79, 100, 178, 340
AspA2I CCTAGG 1 cut(s) 475
AsuC2I CCSGG 2 cut(s) 78, 521
AvrII CCTAGG 1 cut(s) 475
BaeGI GKGCMC 1 cut(s) 24
BanI GGYRCC 1 cut(s) 21
BanII GRGCYC 1 cut(s) 384
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 279, 562
BccI CCATC 1 cut(s) 583
BceAI ACGGC 1 cut(s) 355
BciT130I CCWGG 1 cut(s) 304
BcnI CCSGG 2 cut(s) 78, 521
BfaI CTAG 7 cut(s) 47, 144, 261, 399, 441, 476, 486
BfmI CTRYAG 1 cut(s) 497
BglI GCCNNNNNGGC 2 cut(s) 48, 78
BglII AGATCT 2 cut(s) 493, 513
BlnI CCTAGG 1 cut(s) 475
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 3 cut(s) 78, 304, 521
BmiI GGNNCC 2 cut(s) 23, 52
BmrFI CCNGG 3 cut(s) 78, 304, 521
BmsI GCATC 5 cut(s) 118, 130, 453, 493, 538
BpuMI CCSGG 2 cut(s) 78, 521
BsaBI GATNNNNATC 1 cut(s) 528
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 475
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 481, 589
Bse118I RCCGGY 1 cut(s) 81
Bse8I GATNNNNATC 1 cut(s) 528
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 475
BseGI GGATG 2 cut(s) 508, 529
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 3 cut(s) 176, 481, 589
BseMII CTCAG 1 cut(s) 632
BseSI GKGCMC 1 cut(s) 24
BseX3I CGGCCG 1 cut(s) 79
Bsh1285I CGRYCG 2 cut(s) 58, 82
BshFI GGCC 4 cut(s) 81, 102, 180, 342
BshNI GGYRCC 1 cut(s) 21
BsiEI CGRYCG 2 cut(s) 58, 82
BsiHKAI GWGCWC 2 cut(s) 279, 562
BsiSI CCGG 5 cut(s) 78, 82, 99, 177, 521
BslI CCNNNNNNNGG 3 cut(s) 176, 481, 589
BsnI GGCC 4 cut(s) 81, 102, 180, 342
Bsp1286I GDGCHC 4 cut(s) 24, 279, 384, 562
Bsp1407I TGTACA 2 cut(s) 157, 237
Bsp143I GATC 4 cut(s) 421, 493, 513, 610
BspANI GGCC 4 cut(s) 81, 102, 180, 342
BspCNI CTCAG 1 cut(s) 631
BspLI GGNNCC 2 cut(s) 23, 52
BspMAI CTGCAG 1 cut(s) 501
BspT107I GGYRCC 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 81
BsrGI TGTACA 2 cut(s) 157, 237
BssAI RCCGGY 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 475
BssMI GATC 4 cut(s) 421, 493, 513, 610
BssNI GRCGYC 1 cut(s) 318
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 475
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 4 cut(s) 59, 220, 371, 471
BstACI GRCGYC 1 cut(s) 318
BstAUI TGTACA 2 cut(s) 157, 237
BstC8I GCNNGC 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 618
BstF5I GGATG 2 cut(s) 508, 529
BstKTI GATC 4 cut(s) 424, 496, 516, 613
BstMBI GATC 4 cut(s) 421, 493, 513, 610
BstMCI CGRYCG 2 cut(s) 58, 82
BstMWI GCNNNNNNNGC 3 cut(s) 39, 48, 78
BstNI CCWGG 1 cut(s) 304
BstNSI RCATGY 1 cut(s) 649
BstSCI CCNGG 3 cut(s) 76, 302, 519
BstSFI CTRYAG 1 cut(s) 497
BstSLI GKGCMC 1 cut(s) 24
BstX2I RGATCY 2 cut(s) 493, 513
BstXI CCANNNNNNTGG 1 cut(s) 303
BstYI RGATCY 2 cut(s) 493, 513
BstZI CGGCCG 1 cut(s) 79
BsuRI GGCC 4 cut(s) 81, 102, 180, 342
BtsCI GGATG 2 cut(s) 508, 529
Cac8I GCNNGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 81
CseI GACGC 1 cut(s) 326
CsiI ACCWGGT 1 cut(s) 302
Csp6I GTAC 4 cut(s) 158, 187, 238, 352
CspCI CAANNNNNGTGG 2 cut(s) 289, 324
CviAII CATG 3 cut(s) 244, 541, 646
CviQI GTAC 4 cut(s) 158, 187, 238, 352
DdeI CTNAG 1 cut(s) 618
DpnI GATC 4 cut(s) 423, 495, 515, 612
DpnII GATC 4 cut(s) 421, 493, 513, 610
DrdI GACNNNNNNGTC 1 cut(s) 436
DseDI GACNNNNNNGTC 1 cut(s) 436
EaeI YGGCCR 3 cut(s) 79, 100, 178
EagI CGGCCG 1 cut(s) 79
EclXI CGGCCG 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 384
Eco52I CGGCCG 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 475
EcoT38I GRGCYC 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 475
FaeI CATG 3 cut(s) 247, 544, 649
FaiI YATR 8 cut(s) 215, 245, 327, 437, 467, 542, 597, 647
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FatI CATG 3 cut(s) 243, 540, 645
FokI GGATG 2 cut(s) 515, 536
FriOI GRGCYC 1 cut(s) 384
FspBI CTAG 7 cut(s) 47, 144, 261, 399, 441, 476, 486
HaeIII GGCC 4 cut(s) 81, 102, 180, 342
HapII CCGG 5 cut(s) 78, 82, 99, 177, 521
HgaI GACGC 1 cut(s) 326
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 3 cut(s) 247, 544, 649
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 2 cut(s) 89, 600
HpaII CCGG 5 cut(s) 78, 82, 99, 177, 521
Hpy166II GTNNAC 4 cut(s) 223, 238, 406, 580
Hpy188I TCNGA 5 cut(s) 55, 88, 127, 429, 642
Hpy188III TCNNGA 1 cut(s) 261
Hpy8I GTNNAC 4 cut(s) 223, 238, 406, 580
HpyAV CCTTC 3 cut(s) 36, 83, 548
HpyCH4III ACNGT 4 cut(s) 59, 220, 371, 471
HpyCH4V TGCA 4 cut(s) 334, 359, 499, 540
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 48, 78
HpyF3I CTNAG 1 cut(s) 618
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 3 cut(s) 247, 544, 649
Kzo9I GATC 4 cut(s) 421, 493, 513, 610
LmnI GCTCC 3 cut(s) 56, 565, 643
LweI GCATC 5 cut(s) 118, 130, 453, 493, 538
MabI ACCWGGT 1 cut(s) 302
MaeI CTAG 7 cut(s) 47, 144, 261, 399, 441, 476, 486
MaeIII GTNAC 1 cut(s) 416
MalI GATC 4 cut(s) 423, 495, 515, 612
MboI GATC 4 cut(s) 421, 493, 513, 610
MboII GAAGA 2 cut(s) 416, 508
MflI RGATCY 2 cut(s) 493, 513
MhlI GDGCHC 4 cut(s) 24, 279, 384, 562
MluCI AATT 2 cut(s) 115, 193
MmeI TCCRAC 3 cut(s) 78, 353, 452
MnlI CCTC 4 cut(s) 122, 209, 307, 342
MseI TTAA 3 cut(s) 510, 548, 652
MspI CCGG 5 cut(s) 78, 82, 99, 177, 521
MspR9I CCNGG 3 cut(s) 78, 304, 521
MvaI CCWGG 1 cut(s) 304
MwoI GCNNNNNNNGC 3 cut(s) 39, 48, 78
NciI CCSGG 2 cut(s) 78, 521
NdeII GATC 4 cut(s) 421, 493, 513, 610
NlaIII CATG 3 cut(s) 247, 544, 649
NlaIV GGNNCC 2 cut(s) 23, 52
NspI RCATGY 1 cut(s) 649
PciI ACATGT 1 cut(s) 645
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PfeI GAWTC 2 cut(s) 89, 600
PflMI CCANNNNNTGG 1 cut(s) 589
PfoI TCCNGGA 1 cut(s) 519
PscI ACATGT 1 cut(s) 645
Psp6I CCWGG 1 cut(s) 302
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 2 cut(s) 23, 52
PstI CTGCAG 1 cut(s) 501
PsuI RGATCY 2 cut(s) 493, 513
RsaI GTAC 4 cut(s) 159, 188, 239, 353
RsaNI GTAC 4 cut(s) 158, 187, 238, 352
SaqAI TTAA 3 cut(s) 510, 548, 652
Sau3AI GATC 4 cut(s) 421, 493, 513, 610
ScaI AGTACT 1 cut(s) 188
ScrFI CCNGG 3 cut(s) 78, 304, 521
SduI GDGCHC 4 cut(s) 24, 279, 384, 562
SetI ASST 9 cut(s) 201, 260, 273, 305, 353, 481, 559, 577, 630
SexAI ACCWGGT 1 cut(s) 302
SfaNI GCATC 5 cut(s) 118, 130, 453, 493, 538
SfcI CTRYAG 1 cut(s) 497
Sse9I AATT 2 cut(s) 115, 193
SspMI CTAG 7 cut(s) 47, 144, 261, 399, 441, 476, 486
StyD4I CCNGG 3 cut(s) 76, 302, 519
StyI CCWWGG 1 cut(s) 475
TaaI ACNGT 4 cut(s) 59, 220, 371, 471
TasI AATT 2 cut(s) 115, 193
TatI WGTACW 3 cut(s) 157, 186, 237
TfiI GAWTC 2 cut(s) 89, 600
Tru1I TTAA 3 cut(s) 510, 548, 652
Tru9I TTAA 3 cut(s) 510, 548, 652
TspGWI ACGGA 1 cut(s) 240
Van91I CCANNNNNTGG 1 cut(s) 589
XbaI TCTAGA 1 cut(s) 260
XceI RCATGY 1 cut(s) 649
XmaJI CCTAGG 1 cut(s) 475
XspI CTAG 7 cut(s) 47, 144, 261, 399, 441, 476, 486
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.