MD12G1123700.v1.1

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
19807325 .. 19808572
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1123700.v1.1.491

Sequence Viewer

Length: 1248 bp
ATGATCACCTTCATCTTCCTTTTCACCACCATCACTGCCTCTCAACCCATTACCTTCCCCACCCTTACCATCCACACCACCACTGTGTTCTCCAATAACACTGCCGTTGCCCTTTCGCCGACACCCTCGGCATATTACTGTGTGGAGGTCCAAATTGGACTTCCACGGTTTCCCGTGAAACTGGCTCTATCTACATCAATCCCAACAACCTGGGTGCAGTGGGTTGAATGCGTAGTCTGTTTGGATGTCCCCTCCAAATATATGAACTTCAACCCCTCCGATGGTTTCCAACTTGTTGCCGGGGACGATGCCAATTATTGCGTCCCCCCTGTCGCCAAAACAGCCACATCGGCAGACCTCTGTTGGTACGACATTGGCTTCAGCCAAGGGATTTTGGGGAATGACACCTTCGTATTGGTGTCGCCTGCATCCGTACCCAATCCACCGCCCTCCGCATCCAGTCCACCGCCGTCCTTGAAGATAAACAACTTTATCTTTGGCCTGGGTAAAAAAAACACCGCCAATTTCGGCGCGCGCAGTCCGATAGTCGGACAGCTTGGCCTCGGAAAGGGCCACCCCTCTTCCACCCTCTCACAGCTCAACATCAGCCGCTTTTCCTACTGCCTTCCGCCCTCCAACTCCAACCACCAAAACACGACTGCAACCCTCGAGTTTGGCCCCAAAGCCGGACTAACTACTGCTTACTACTACAATACCCCGATTGTTGAAGGACCCCCCGACCACCCCTTCGACTATTACCTTAACCTCACGGTGATTGCCGTCAACAACGCATCAGTTTACACACCTTCAGAACAGAGAGGAGGGGAACCAGGATTTGTCATTGACGTGGGAGCCACGGTCACCGTCTTGTACAAGGAGGCTTACATCCCGATGAAAAACGCTGTGATGGAATATCTTTCCAGTCACTTCGGACTGTACCCGGTTTACCCCTCCCCACCTGAGTACGATCCCCCAGCTTATGAGCTCTGTTATTACAACGAGGATCTTGAGTCCCTCACCACCCTCACCTACCCGAACATTTCCTTCCATTTCGAAGGAGGAGCGGTGTTGCAGCTGCCAGAATCTCAAGCCTTCCACAACTTTGTGGATGAGCTTCAAACGTGCTTGGTAATGATCCCCAGGACTGGGACAGAGCCAAGCCGGCTGGGTGCACCACAGCAAAGAGGGTGGAGATTCACATACGATCTCCTCCTTTCGGAGCTGTCTTTCGCTCCAAATGGGTGTTGA

Protein Analysis

416

Amino Acids

45.31

Weight (kDa)

4.87

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 46 - 226 5.5e-13 Xylanase inhibitor N-terminal
TAXi_C PF14541 251 - 411 8.1e-15 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1064
AccII CGCG 2 cut(s) 533, 535
AciI CCGC 7 cut(s) 446, 453, 467, 519, 610, 629, 1064
AclWI GGATC 3 cut(s) 962, 1011, 1129
AcuI CTGAAG 2 cut(s) 364, 792
AfaI GTAC 5 cut(s) 368, 435, 872, 938, 965
AfiI CCNNNNNNNGG 7 cut(s) 281, 548, 568, 686, 1145, 1146, 1216
AgsI TTSAA 5 cut(s) 227, 271, 478, 728, 1118
AjiI CACGTC 1 cut(s) 847
AjnI CCWGG 4 cut(s) 209, 501, 829, 1139
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AleI CACNNNNGTG 1 cut(s) 83
AluBI AGCT 7 cut(s) 556, 598, 977, 985, 1075, 1114, 1222
AluI AGCT 7 cut(s) 556, 598, 977, 985, 1075, 1114, 1222
Alw21I GWGCWC 2 cut(s) 987, 1174
Alw44I GTGCAC 1 cut(s) 1170
AlwI GGATC 3 cut(s) 962, 1011, 1129
Ama87I CYCGRG 1 cut(s) 668
AoxI GGCC 4 cut(s) 499, 559, 571, 676
ApaLI GTGCAC 1 cut(s) 1170
ApeKI GCWGC 2 cut(s) 1072, 1075
ArsI GACNNNNNNTTYG 2 cut(s) 731, 763
AspLEI GCGC 3 cut(s) 533, 535, 537
AspS9I GGNCC 4 cut(s) 148, 571, 677, 731
AsuC2I CCSGG 2 cut(s) 301, 941
AsuHPI GGTGA 5 cut(s) 16, 784, 853, 1009, 1018
AsuII TTCGAA 1 cut(s) 1053
AvaI CYCGRG 1 cut(s) 668
AvaII GGWCC 2 cut(s) 148, 731
BaeGI GKGCMC 1 cut(s) 1174
BanII GRGCYC 1 cut(s) 987
Bbv12I GWGCWC 2 cut(s) 987, 1174
BbvI GCAGC 2 cut(s) 1062, 1084
BccI CCATC 4 cut(s) 38, 77, 275, 901
BceAI ACGGC 3 cut(s) 89, 454, 764
BciT130I CCWGG 4 cut(s) 211, 503, 831, 1141
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 301, 941
BglI GCCNNNNNGGC 2 cut(s) 350, 1162
BisI GCNGC 3 cut(s) 610, 1073, 1076
BlsI GCNGC 3 cut(s) 611, 1074, 1077
Bme1390I CCNGG 6 cut(s) 211, 301, 503, 831, 941, 1141
Bme18I GGWCC 2 cut(s) 148, 731
BmeT110I CYCGRG 1 cut(s) 668
BmgBI CACGTC 1 cut(s) 847
BmgT120I GGNCC 4 cut(s) 148, 571, 677, 731
BmiI GGNNCC 4 cut(s) 679, 733, 828, 853
BmrFI CCNGG 6 cut(s) 211, 301, 503, 831, 941, 1141
BmrI ACTGGG 1 cut(s) 1155
BmsI GCATC 4 cut(s) 298, 437, 464, 800
BmuI ACTGGG 1 cut(s) 1155
Bpu14I TTCGAA 1 cut(s) 1053
BpuEI CTTGAG 2 cut(s) 1028, 1071
BpuMI CCSGG 2 cut(s) 301, 941
BsaJI CCNNGG 9 cut(s) 126, 164, 210, 300, 385, 502, 562, 855, 1139
BsaXI ACNNNNNCTCC 4 cut(s) 843, 873, 1050, 1080
Bsc4I CCNNNNNNNGG 7 cut(s) 281, 548, 568, 686, 1145, 1146, 1216
Bse118I RCCGGY 1 cut(s) 1161
Bse1I ACTGG 4 cut(s) 186, 459, 921, 1150
BseBI CCWGG 4 cut(s) 211, 503, 831, 1141
BseDI CCNNGG 9 cut(s) 126, 164, 210, 300, 385, 502, 562, 855, 1139
BseGI GGATG 6 cut(s) 69, 250, 428, 455, 885, 1114
BseLI CCNNNNNNNGG 7 cut(s) 281, 548, 568, 686, 1145, 1146, 1216
BseMII CTCAG 1 cut(s) 951
BseNI ACTGG 4 cut(s) 186, 459, 921, 1150
BsePI GCGCGC 2 cut(s) 531, 533
BseRI GAGGAG 3 cut(s) 834, 1074, 1199
BseSI GKGCMC 1 cut(s) 1174
BseXI GCAGC 2 cut(s) 1062, 1084
BseYI CCCAGC 2 cut(s) 973, 1165
BsgI GTGCAG 1 cut(s) 236
Bsh1236I CGCG 2 cut(s) 533, 535
BshFI GGCC 4 cut(s) 501, 561, 573, 678
BsiHKAI GWGCWC 2 cut(s) 987, 1174
BsiHKCI CYCGRG 1 cut(s) 668
BsiSI CCGG 4 cut(s) 300, 687, 941, 1162
BslFI GGGAC 5 cut(s) 233, 308, 317, 997, 1162
BslI CCNNNNNNNGG 7 cut(s) 281, 548, 568, 686, 1145, 1146, 1216
BsmFI GGGAC 5 cut(s) 233, 308, 317, 997, 1162
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 4 cut(s) 501, 561, 573, 678
BsoBI CYCGRG 1 cut(s) 668
Bsp119I TTCGAA 1 cut(s) 1053
Bsp1286I GDGCHC 2 cut(s) 987, 1174
Bsp1407I TGTACA 1 cut(s) 870
Bsp143I GATC 5 cut(s) 3, 967, 1003, 1134, 1204
BspACI CCGC 7 cut(s) 446, 453, 467, 519, 610, 629, 1064
BspANI GGCC 4 cut(s) 501, 561, 573, 678
BspCNI CTCAG 1 cut(s) 952
BspFNI CGCG 2 cut(s) 533, 535
BspLI GGNNCC 4 cut(s) 679, 733, 828, 853
BspPI GGATC 3 cut(s) 962, 1011, 1129
BspT104I TTCGAA 1 cut(s) 1053
BsrBI CCGCTC 1 cut(s) 1064
BsrFI RCCGGY 1 cut(s) 1161
BsrGI TGTACA 1 cut(s) 870
BsrI ACTGG 4 cut(s) 186, 459, 921, 1150
BssAI RCCGGY 1 cut(s) 1161
BssECI CCNNGG 9 cut(s) 126, 164, 210, 300, 385, 502, 562, 855, 1139
BssHII GCGCGC 2 cut(s) 531, 533
BssMI GATC 5 cut(s) 3, 967, 1003, 1134, 1204
BssT1I CCWWGG 1 cut(s) 385
Bst2UI CCWGG 4 cut(s) 211, 503, 831, 1141
Bst4CI ACNGT 7 cut(s) 85, 140, 168, 772, 859, 865, 936
Bst6I CTCTTC 1 cut(s) 586
BstAUI TGTACA 1 cut(s) 870
BstBI TTCGAA 1 cut(s) 1053
BstC8I GCNNGC 4 cut(s) 426, 533, 535, 1163
BstDEI CTNAG 1 cut(s) 960
BstDSI CCRYGG 2 cut(s) 164, 855
BstEII GGTNACC 1 cut(s) 859
BstENI CCTNNNNNAGG 1 cut(s) 566
BstF5I GGATG 6 cut(s) 69, 250, 428, 455, 885, 1114
BstFNI CGCG 2 cut(s) 533, 535
BstHHI GCGC 3 cut(s) 533, 535, 537
BstKTI GATC 5 cut(s) 6, 970, 1006, 1137, 1207
BstMBI GATC 5 cut(s) 3, 967, 1003, 1134, 1204
BstMWI GCNNNNNNNGC 3 cut(s) 341, 350, 1162
BstNI CCWGG 4 cut(s) 211, 503, 831, 1141
BstPI GGTNACC 1 cut(s) 859
BstSCI CCNGG 6 cut(s) 209, 299, 501, 829, 939, 1139
BstSLI GKGCMC 1 cut(s) 1174
BstUI CGCG 2 cut(s) 533, 535
BstV1I GCAGC 2 cut(s) 1062, 1084
BstX2I RGATCY 1 cut(s) 1003
BstXI CCANNNNNNTGG 1 cut(s) 210
BstYI RGATCY 1 cut(s) 1003
BsuRI GGCC 4 cut(s) 501, 561, 573, 678
BtgI CCRYGG 2 cut(s) 164, 855
BtrI CACGTC 1 cut(s) 847
BtsCI GGATG 6 cut(s) 69, 250, 428, 455, 885, 1114
BtsI GCAGTG 3 cut(s) 33, 99, 224
BtsIMutI CAGTG 4 cut(s) 33, 81, 99, 224
Cac8I GCNNGC 4 cut(s) 426, 533, 535, 1163
CfoI GCGC 3 cut(s) 533, 535, 537
Cfr10I RCCGGY 1 cut(s) 1161
Cfr13I GGNCC 4 cut(s) 148, 571, 677, 731
CseI GACGC 1 cut(s) 310
Csp6I GTAC 5 cut(s) 367, 434, 871, 937, 964
CspCI CAANNNNNGTGG 2 cut(s) 1169, 1204
CviQI GTAC 5 cut(s) 367, 434, 871, 937, 964
DdeI CTNAG 1 cut(s) 960
DpnI GATC 5 cut(s) 5, 969, 1005, 1136, 1206
DpnII GATC 5 cut(s) 3, 967, 1003, 1134, 1204
Eam1104I CTCTTC 1 cut(s) 586
EarI CTCTTC 1 cut(s) 586
EciI GGCGGA 1 cut(s) 618
Ecl136II GAGCTC 1 cut(s) 985
Eco130I CCWWGG 1 cut(s) 385
Eco24I GRGCYC 1 cut(s) 987
Eco47I GGWCC 2 cut(s) 148, 731
Eco53kI GAGCTC 1 cut(s) 985
Eco57I CTGAAG 2 cut(s) 364, 792
Eco88I CYCGRG 1 cut(s) 668
Eco91I GGTNACC 1 cut(s) 859
EcoICRI GAGCTC 1 cut(s) 985
EcoNI CCTNNNNNAGG 1 cut(s) 566
EcoO109I RGGNCCY 1 cut(s) 731
EcoO65I GGTNACC 1 cut(s) 859
EcoRII CCWGG 4 cut(s) 209, 501, 829, 1139
EcoT14I CCWWGG 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 987
ErhI CCWWGG 1 cut(s) 385
FaiI YATR 5 cut(s) 133, 261, 263, 981, 1201
FaqI GGGAC 5 cut(s) 233, 308, 317, 997, 1162
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 610, 1073, 1076
FokI GGATG 6 cut(s) 56, 257, 415, 442, 872, 1121
FriOI GRGCYC 1 cut(s) 987
Fsp4HI GCNGC 3 cut(s) 610, 1073, 1076
GlaI GCGC 3 cut(s) 532, 534, 536
GluI GCNGC 3 cut(s) 610, 1073, 1076
GsaI CCCAGC 2 cut(s) 977, 1169
HaeIII GGCC 4 cut(s) 501, 561, 573, 678
HapII CCGG 4 cut(s) 300, 687, 941, 1162
HgaI GACGC 1 cut(s) 310
HhaI GCGC 3 cut(s) 533, 535, 537
Hin6I GCGC 3 cut(s) 531, 533, 535
HinP1I GCGC 3 cut(s) 531, 533, 535
HincII GTYRAC 1 cut(s) 784
HindII GTYRAC 1 cut(s) 784
HinfI GANTC 3 cut(s) 1010, 1082, 1194
HpaII CCGG 4 cut(s) 300, 687, 941, 1162
HphI GGTGA 5 cut(s) 16, 784, 853, 1009, 1018
Hpy166II GTNNAC 5 cut(s) 464, 784, 799, 946, 1172
Hpy188I TCNGA 7 cut(s) 280, 543, 551, 566, 811, 932, 1219
Hpy188III TCNNGA 2 cut(s) 889, 1007
Hpy8I GTNNAC 5 cut(s) 464, 784, 799, 946, 1172
HpyCH4III ACNGT 7 cut(s) 85, 140, 168, 772, 859, 865, 936
HpyCH4IV ACGT 2 cut(s) 846, 1121
HpyCH4V TGCA 5 cut(s) 217, 428, 662, 1072, 1172
HpyF10VI GCNNNNNNNGC 3 cut(s) 341, 350, 1162
HpyF3I CTNAG 1 cut(s) 960
HpySE526I ACGT 2 cut(s) 846, 1121
HspAI GCGC 3 cut(s) 531, 533, 535
KroI GCCGGC 1 cut(s) 1161
KroNI GCCGGC 1 cut(s) 1163
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 5 cut(s) 3, 967, 1003, 1134, 1204
LmnI GCTCC 4 cut(s) 851, 1061, 1219, 1237
Lsp1109I GCAGC 2 cut(s) 1062, 1084
LweI GCATC 4 cut(s) 298, 437, 464, 800
MaeII ACGT 2 cut(s) 846, 1121
MaeIII GTNAC 2 cut(s) 859, 923
MalI GATC 5 cut(s) 5, 969, 1005, 1136, 1206
MbiI CCGCTC 1 cut(s) 1064
MboI GATC 5 cut(s) 3, 967, 1003, 1134, 1204
MboII GAAGA 3 cut(s) 7, 490, 573
MflI RGATCY 1 cut(s) 1003
MhlI GDGCHC 2 cut(s) 987, 1174
MluCI AATT 3 cut(s) 153, 313, 523
MlyI GAGTC 1 cut(s) 1019
MmeI TCCRAC 4 cut(s) 313, 529, 660, 666
MroNI GCCGGC 1 cut(s) 1161
MseI TTAA 1 cut(s) 762
MslI CAYNNNNRTG 3 cut(s) 83, 845, 890
MspA1I CMGCKG 1 cut(s) 1075
MspI CCGG 4 cut(s) 300, 687, 941, 1162
MspR9I CCNGG 6 cut(s) 211, 301, 503, 831, 941, 1141
Mva1269I GAATGC 1 cut(s) 233
MvaI CCWGG 4 cut(s) 211, 503, 831, 1141
MvnI CGCG 2 cut(s) 533, 535
MwoI GCNNNNNNNGC 3 cut(s) 341, 350, 1162
NaeI GCCGGC 1 cut(s) 1163
NciI CCSGG 2 cut(s) 301, 941
NdeII GATC 5 cut(s) 3, 967, 1003, 1134, 1204
NgoMIV GCCGGC 1 cut(s) 1161
NlaIV GGNNCC 4 cut(s) 679, 733, 828, 853
NmeAIII GCCGAG 1 cut(s) 107
NmuCI GTSAC 2 cut(s) 859, 923
NspV TTCGAA 1 cut(s) 1053
OliI CACNNNNGTG 1 cut(s) 83
PaeR7I CTCGAG 1 cut(s) 668
PauI GCGCGC 2 cut(s) 531, 533
PctI GAATGC 1 cut(s) 233
PdiI GCCGGC 1 cut(s) 1163
PfeI GAWTC 2 cut(s) 1082, 1194
PkrI GCNGC 3 cut(s) 611, 1074, 1077
PleI GAGTC 1 cut(s) 1018
PpsI GAGTC 1 cut(s) 1018
PpuMI RGGWCCY 1 cut(s) 731
Psp124BI GAGCTC 1 cut(s) 987
Psp5II RGGWCCY 1 cut(s) 731
Psp6I CCWGG 4 cut(s) 209, 501, 829, 1139
PspEI GGTNACC 1 cut(s) 859
PspFI CCCAGC 2 cut(s) 973, 1165
PspGI CCWGG 4 cut(s) 209, 501, 829, 1139
PspN4I GGNNCC 4 cut(s) 679, 733, 828, 853
PspPI GGNCC 4 cut(s) 148, 571, 677, 731
PspPPI RGGWCCY 1 cut(s) 731
PspXI VCTCGAGB 1 cut(s) 668
PsuI RGATCY 1 cut(s) 1003
PteI GCGCGC 2 cut(s) 531, 533
PvuII CAGCTG 1 cut(s) 1075
RsaI GTAC 5 cut(s) 368, 435, 872, 938, 965
RsaNI GTAC 5 cut(s) 367, 434, 871, 937, 964
RseI CAYNNNNRTG 3 cut(s) 83, 845, 890
SacI GAGCTC 1 cut(s) 987
SaqAI TTAA 1 cut(s) 762
SatI GCNGC 3 cut(s) 610, 1073, 1076
Sau3AI GATC 5 cut(s) 3, 967, 1003, 1134, 1204
Sau96I GGNCC 4 cut(s) 148, 571, 677, 731
SchI GAGTC 1 cut(s) 1019
ScrFI CCNGG 6 cut(s) 211, 301, 503, 831, 941, 1141
SduI GDGCHC 2 cut(s) 987, 1174
SfaNI GCATC 4 cut(s) 298, 437, 464, 800
Sfr274I CTCGAG 1 cut(s) 668
SfuI TTCGAA 1 cut(s) 1053
SinI GGWCC 2 cut(s) 148, 731
SlaI CTCGAG 1 cut(s) 668
SmiMI CAYNNNNRTG 3 cut(s) 83, 845, 890
SmlI CTYRAG 3 cut(s) 668, 1007, 1086
SmoI CTYRAG 3 cut(s) 668, 1007, 1086
Sse9I AATT 3 cut(s) 153, 313, 523
SsiI CCGC 7 cut(s) 446, 453, 467, 519, 610, 629, 1064
SstI GAGCTC 1 cut(s) 987
StyD4I CCNGG 6 cut(s) 209, 299, 501, 829, 939, 1139
StyI CCWWGG 1 cut(s) 385
TaaI ACNGT 7 cut(s) 85, 140, 168, 772, 859, 865, 936
TaiI ACGT 2 cut(s) 849, 1124
TaqI TCGA 3 cut(s) 669, 750, 1053
TasI AATT 3 cut(s) 153, 313, 523
TatI WGTACW 1 cut(s) 870
TauI GCSGC 1 cut(s) 612
TfiI GAWTC 2 cut(s) 1082, 1194
Tru1I TTAA 1 cut(s) 762
Tru9I TTAA 1 cut(s) 762
TscAI CASTG 4 cut(s) 40, 88, 106, 224
TseFI GTSAC 2 cut(s) 859, 923
TseI GCWGC 2 cut(s) 1072, 1075
Tsp45I GTSAC 2 cut(s) 859, 923
TspDTI ATGAA 2 cut(s) 278, 908
TspGWI ACGGA 1 cut(s) 421
TspRI CASTG 4 cut(s) 40, 88, 106, 224
VneI GTGCAC 1 cut(s) 1170
VpaK11BI GGWCC 2 cut(s) 148, 731
XagI CCTNNNNNAGG 1 cut(s) 566
XhoI CTCGAG 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.