Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005185

Physical Location & Seq

Genomic Coordinates Forward (+)

5843699 .. 5844890

Gene Structure 1192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00222790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCTAGCAATATTAATGTTCCCATAGCTTTTCTCATGCTCATAGCCATTGCCCGCCAAAGCCAGGGATTTGGCATTAGCCTGATTCCAGTGGTGTCTCCCAAATTACCAATACCTGACAGCCAGGCTAGTGAAGGTGAGGTTGGGTTTGACACCTTTACATTCTTTTCTGAAAATGGCCAGCCGCAACCAATTCCACATGTGGCACTTGGATCTGGACTCATCAATGATATTGACGACGGGCAAGAAGGTCCACTTGGTACTCCGATTGGAGGAATTCTTGGGTTAGAGAAAGGTCGCCCCTCTTCTATCCTACAGCAACTGAGGTCTATCACACTTCAGAGTTTTTCTTACTGCCTTCCCCTCGACTTAGAATTGGGGAATATAACTGTCTTATACTTTGGGAATGGTACAGAACTATGTTGTCCTAGTGTCGAGGTGACACCCTTTTTGGATGACTACTATAAGCTAAAGCTAAATGGGATCAGTATCAATGGTGGGTTTCTCCCAATTGATCCAGCATTATTTATGCCACGGGCAAGTGACGGGTTTTATATAGATTCAGGAACAGCAAACGGTCTTCTTGTGGGGAAAGTTTACGACATTTTGCAACAAGGTATGGTAGACTACTTTCAAGACTATTATGGCTGGCTTCCTCTGAACAGAACTGCTAGACTTGACCACTATGAGCTTTGCTCTGGGTTACCCAGTGAAGGAAGGTATGTTTCTCCAACATTGACCTTTCACTTTGGGACCCTCCTTACTTCCAAGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Asp TAXi_C TAXi_N

Protein Analysis

258

Amino Acids

27.97

Weight (kDa)

4.47

Isoelectric Point (pI)

52.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	40 - 136	2.3e-08	Xylanase inhibitor N-terminal
TAXi_C	PF14541	155 - 251	2.1e-06	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005185)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34990 FvH4_3g35000 FvH4_5g18970 FvH4_6g04130 FvH4_6g08260
malus_domestica	MD02G1129300.v1.1 MD04G1217500.v1.1 MD12G1123700.v1.1 MD12G1232300.v1.1
prunus_persica	Prupe.5G037200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0452701 RchiOBHm_Chr3g0452711
rosa_laevigata	RLG00000000901 RLG00000025573
rosa_roxburghii	Rroxscaffold_3G00222790 Rroxscaffold_6G00429720
rosa_rugosa	Rorug02G0642700 Rorug02G0642800 Rorug07G0314700
rosa_samantha	Rh3BG047400 Rh3BG047500 Rh3CG045900 Rh3CG046000 Rh3DG046200 Rh3DG046300 Rh7AG470200 Rh7AG470300 Rh7BG440300
rosa_wichuraiana	Rw3G003510 Rw3G003520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	624
AciI	CCGC	2 cut(s)	55, 185
AclWI	GGATC	3 cut(s)	220, 491, 509
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	2 cut(s)	262, 412
AfiI	CCNNNNNNNGG	3 cut(s)	64, 272, 713
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	1 cut(s)	635
AjnI	CCWGG	2 cut(s)	63, 123
AjuI	GAANNNNNNNTTGG	4 cut(s)	126, 158, 240, 272
AluBI	AGCT	4 cut(s)	29, 469, 475, 691
AluI	AGCT	4 cut(s)	29, 469, 475, 691
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	3 cut(s)	220, 491, 509
AlwNI	CAGNNNCTG	1 cut(s)	322
AoxI	GGCC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	276
ArsI	GACNNNNNNTTYG	2 cut(s)	433, 465
AseI	ATTAAT	1 cut(s)	15
AspS9I	GGNCC	2 cut(s)	251, 753
AsuHPI	GGTGA	2 cut(s)	149, 451
AvaII	GGWCC	2 cut(s)	251, 753
BalI	TGGCCA	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	572
BciT130I	CCWGG	2 cut(s)	65, 125
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	4 cut(s)	6, 129, 429, 672
BfmI	CTRYAG	1 cut(s)	314
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	2 cut(s)	65, 125
Bme18I	GGWCC	2 cut(s)	251, 753
BmgT120I	GGNCC	2 cut(s)	251, 753
BmiI	GGNNCC	2 cut(s)	754, 755
BmrFI	CCNGG	2 cut(s)	65, 125
BmrI	ACTGGG	1 cut(s)	702
BmuI	ACTGGG	1 cut(s)	702
BpiI	GAAGAC	1 cut(s)	572
BplI	GAGNNNNNCTC	2 cut(s)	680, 712
BsaBI	GATNNNNATC	1 cut(s)	488
BsaJI	CCNNGG	2 cut(s)	64, 533
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 272, 713
Bse1I	ACTGG	2 cut(s)	89, 708
Bse3DI	GCAATG	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	488
BseBI	CCWGG	2 cut(s)	65, 125
BseDI	CCNNGG	2 cut(s)	64, 533
BseGI	GGATG	1 cut(s)	460
BseJI	GATNNNNATC	1 cut(s)	488
BseLI	CCNNNNNNNGG	3 cut(s)	64, 272, 713
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	2 cut(s)	89, 708
BshFI	GGCC	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	766
BslI	CCNNNNNNNGG	3 cut(s)	64, 272, 713
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	766
BsnI	GGCC	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	212, 483, 514
BspACI	CCGC	2 cut(s)	55, 185
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	315
BspLI	GGNNCC	2 cut(s)	754, 755
BspPI	GGATC	3 cut(s)	220, 491, 509
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	89, 708
BssECI	CCNNGG	2 cut(s)	64, 533
BssMI	GATC	3 cut(s)	212, 483, 514
Bst2UI	CCWGG	2 cut(s)	65, 125
Bst4CI	ACNGT	2 cut(s)	391, 578
Bst6I	CTCTTC	1 cut(s)	310
BstC8I	GCNNGC	3 cut(s)	55, 182, 650
BstDEI	CTNAG	2 cut(s)	323, 370
BstDSI	CCRYGG	1 cut(s)	533
BstEII	GGTNACC	1 cut(s)	702
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	3 cut(s)	215, 486, 517
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	3 cut(s)	212, 483, 514
BstNI	CCWGG	2 cut(s)	65, 125
BstNSI	RCATGY	1 cut(s)	203
BstPI	GGTNACC	1 cut(s)	702
BstSCI	CCNGG	2 cut(s)	63, 123
BstSFI	CTRYAG	1 cut(s)	314
BstV2I	GAAGAC	1 cut(s)	572
BstX2I	RGATCY	1 cut(s)	212
BstXI	CCANNNNNNTGG	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	533
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	2 cut(s)	96, 715
Cac8I	GCNNGC	3 cut(s)	55, 182, 650
CaiI	CAGNNNCTG	1 cut(s)	322
Cfr13I	GGNCC	2 cut(s)	251, 753
Csp6I	GTAC	2 cut(s)	261, 411
CviAII	CATG	2 cut(s)	37, 200
CviQI	GTAC	2 cut(s)	261, 411
DdeI	CTNAG	2 cut(s)	323, 370
DpnI	GATC	3 cut(s)	214, 485, 516
DpnII	GATC	3 cut(s)	212, 483, 514
EaeI	YGGCCR	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	251, 753
Eco57I	CTGAAG	1 cut(s)	323
Eco91I	GGTNACC	1 cut(s)	702
EcoO109I	RGGNCCY	1 cut(s)	753
EcoO65I	GGTNACC	1 cut(s)	702
EcoRI	GAATTC	1 cut(s)	276
EcoRII	CCWGG	2 cut(s)	63, 123
FaeI	CATG	2 cut(s)	40, 203
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FaqI	GGGAC	1 cut(s)	766
FatI	CATG	2 cut(s)	36, 199
FauI	CCCGC	1 cut(s)	62
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	4 cut(s)	6, 129, 429, 672
GluI	GCNGC	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	180
Hin1II	CATG	2 cut(s)	40, 203
HinfI	GANTC	3 cut(s)	85, 219, 560
HphI	GGTGA	2 cut(s)	149, 451
Hpy166II	GTNNAC	3 cut(s)	254, 598, 625
Hpy188I	TCNGA	4 cut(s)	172, 267, 342, 660
Hpy188III	TCNNGA	3 cut(s)	216, 564, 635
Hpy8I	GTNNAC	3 cut(s)	254, 598, 625
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	5 cut(s)	128, 242, 368, 707, 711
HpyCH4III	ACNGT	2 cut(s)	391, 578
HpyCH4V	TGCA	1 cut(s)	610
HpyF3I	CTNAG	2 cut(s)	323, 370
Hsp92II	CATG	2 cut(s)	40, 203
KflI	GGGWCCC	1 cut(s)	753
Kzo9I	GATC	3 cut(s)	212, 483, 514
MaeI	CTAG	4 cut(s)	6, 129, 429, 672
MaeIII	GTNAC	3 cut(s)	439, 542, 702
MalI	GATC	3 cut(s)	214, 485, 516
MboI	GATC	3 cut(s)	212, 483, 514
MboII	GAAGA	2 cut(s)	297, 572
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	180
MluCI	AATT	5 cut(s)	104, 192, 276, 374, 510
MluNI	TGGCCA	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	755
MnlI	CCTC	8 cut(s)	133, 266, 313, 318, 374, 430, 666, 767
Mox20I	TGGCCA	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	180
MspR9I	CCNGG	2 cut(s)	65, 125
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	2 cut(s)	65, 125
NdeII	GATC	3 cut(s)	212, 483, 514
NlaIII	CATG	2 cut(s)	40, 203
NlaIV	GGNNCC	2 cut(s)	754, 755
NmuCI	GTSAC	2 cut(s)	439, 542
NspI	RCATGY	1 cut(s)	203
PciI	ACATGT	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	85, 560
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
PpuMI	RGGWCCY	1 cut(s)	753
PscI	ACATGT	1 cut(s)	199
PshBI	ATTAAT	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	753
Psp6I	CCWGG	2 cut(s)	63, 123
PspEI	GGTNACC	1 cut(s)	702
PspGI	CCWGG	2 cut(s)	63, 123
PspN4I	GGNNCC	2 cut(s)	754, 755
PspPI	GGNCC	2 cut(s)	251, 753
PspPPI	RGGWCCY	1 cut(s)	753
PstNI	CAGNNNCTG	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	2 cut(s)	262, 412
RsaNI	GTAC	2 cut(s)	261, 411
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	3 cut(s)	212, 483, 514
Sau96I	GGNCC	2 cut(s)	251, 753
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	2 cut(s)	65, 125
SfcI	CTRYAG	1 cut(s)	314
SinI	GGWCC	2 cut(s)	251, 753
Sse9I	AATT	5 cut(s)	104, 192, 276, 374, 510
SsiI	CCGC	2 cut(s)	55, 185
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	4 cut(s)	6, 129, 429, 672
StyD4I	CCNGG	2 cut(s)	63, 123
TaaI	ACNGT	2 cut(s)	391, 578
TaqI	TCGA	2 cut(s)	366, 435
TasI	AATT	5 cut(s)	104, 192, 276, 374, 510
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	2 cut(s)	85, 560
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	2 cut(s)	96, 715
TseFI	GTSAC	2 cut(s)	439, 542
Tsp45I	GTSAC	2 cut(s)	439, 542
TspRI	CASTG	2 cut(s)	96, 715
VpaK11BI	GGWCC	2 cut(s)	251, 753
VspI	ATTAAT	1 cut(s)	15
XapI	RAATTY	1 cut(s)	276
XceI	RCATGY	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	624
XspI	CTAG	4 cut(s)	6, 129, 429, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.