Rh7AG470200

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005185
Physical Location & Seq
Reverse (-)
65102277 .. 65102821
545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG470200.1

Sequence Viewer

Length: 444 bp
ATGGTGGGCTTCTCCCAATTGATCCAGCATTATTTATGCCACCGGCAAGTGACGGCCGGTATTTATATAGATTCAGGAAGAGAAAACAGTCTTCTTGTGGGGAAAGTTTACGACATTTTGCAACAAGGTATGGTAGACTACTTTCAAGACTATTATGGCTGGCTTCCTCTGAACAGAACTACTAGACTTGACCACTATGAGCTTTGCTCTGAGTTACCCAGTGAAGGAAGATGCTATGTTCATTTTCAAGGCACTGCCAATCTTGAGCTTGATGAAAATAGCATCTTCAAGGTGTTTGACCAAGCAAATCAGTTCTGCATGACGATACTACGACTTGGAAGTAAGGAGAGTCCCAACATTTTGGGCGAGCTGCAACAGGCAAACTATAGGTTCCTCTTTGACGTTGCTGCCTCCAAATTGTCGTCTGCAAAAGATATTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

147

Amino Acids

16.88

Weight (kDa)

5.25

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 14 - 141 3.2e-10 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 135
AclWI GGATC 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 3 cut(s) 146, 248, 289
AluBI AGCT 3 cut(s) 202, 268, 370
AluI AGCT 3 cut(s) 202, 268, 370
AlwI GGATC 1 cut(s) 16
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 2 cut(s) 370, 407
BbsI GAAGAC 1 cut(s) 83
BbvI GCAGC 2 cut(s) 357, 394
BceAI ACGGC 1 cut(s) 69
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 385
BisI GCNGC 2 cut(s) 371, 408
BlsI GCNGC 2 cut(s) 372, 409
BmiI GGNNCC 1 cut(s) 392
BmrI ACTGGG 1 cut(s) 213
BmsI GCATC 2 cut(s) 221, 291
BmuI ACTGGG 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 83
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BpuEI CTTGAG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse118I RCCGGY 2 cut(s) 42, 56
Bse1I ACTGG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 219
BseX3I CGGCCG 1 cut(s) 54
BseXI GCAGC 2 cut(s) 357, 394
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 1 cut(s) 56
BsiEI CGRYCG 1 cut(s) 57
BsiSI CCGG 2 cut(s) 43, 57
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 1 cut(s) 56
Bsp143I GATC 1 cut(s) 21
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 392
BspPI GGATC 1 cut(s) 16
BsrFI RCCGGY 2 cut(s) 42, 56
BsrI ACTGG 1 cut(s) 219
BssAI RCCGGY 2 cut(s) 42, 56
BssMI GATC 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 73
BstC8I GCNNGC 2 cut(s) 161, 368
BstDEI CTNAG 1 cut(s) 210
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstMCI CGRYCG 1 cut(s) 57
BstSFI CTRYAG 1 cut(s) 385
BstV1I GCAGC 2 cut(s) 357, 394
BstV2I GAAGAC 1 cut(s) 83
BstXI CCANNNNNNTGG 1 cut(s) 361
BstZI CGGCCG 1 cut(s) 54
BsuRI GGCC 1 cut(s) 56
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 226, 252
Cac8I GCNNGC 2 cut(s) 161, 368
Cfr10I RCCGGY 2 cut(s) 42, 56
CviAII CATG 1 cut(s) 319
CviJI RGCY 7 cut(s) 9, 56, 159, 163, 202, 268, 370
CviKI_1 RGCY 7 cut(s) 9, 56, 159, 163, 202, 268, 370
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 54
EagI CGGCCG 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
EclXI CGGCCG 1 cut(s) 54
Eco52I CGGCCG 1 cut(s) 54
FaeI CATG 1 cut(s) 322
FaiI YATR 9 cut(s) 37, 66, 68, 131, 156, 198, 237, 320, 387
FaqI GGGAC 1 cut(s) 336
FatI CATG 1 cut(s) 318
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 371, 408
Fsp4HI GCNGC 2 cut(s) 371, 408
FspBI CTAG 1 cut(s) 183
GluI GCNGC 2 cut(s) 371, 408
HaeIII GGCC 1 cut(s) 56
HapII CCGG 2 cut(s) 43, 57
Hin1II CATG 1 cut(s) 322
HinfI GANTC 2 cut(s) 71, 349
HpaII CCGG 2 cut(s) 43, 57
Hpy166II GTNNAC 2 cut(s) 109, 136
Hpy188I TCNGA 2 cut(s) 171, 211
Hpy188III TCNNGA 3 cut(s) 75, 146, 263
Hpy8I GTNNAC 2 cut(s) 109, 136
HpyAV CCTTC 1 cut(s) 218
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 4 cut(s) 121, 318, 373, 428
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 1 cut(s) 402
Hsp92II CATG 1 cut(s) 322
Kzo9I GATC 1 cut(s) 21
LpnPI CCDG 7 cut(s) 38, 56, 60, 70, 145, 232, 362
Lsp1109I GCAGC 2 cut(s) 357, 394
LweI GCATC 2 cut(s) 221, 291
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 402
MaeIII GTNAC 2 cut(s) 49, 213
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 4 cut(s) 83, 90, 240, 277
MfeI CAATTG 1 cut(s) 17
MluCI AATT 2 cut(s) 17, 416
MlyI GAGTC 1 cut(s) 358
MnlI CCTC 3 cut(s) 177, 404, 421
MspI CCGG 2 cut(s) 43, 57
MunI CAATTG 1 cut(s) 17
NdeII GATC 1 cut(s) 21
NlaIII CATG 1 cut(s) 322
NlaIV GGNNCC 1 cut(s) 392
NmuCI GTSAC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 2 cut(s) 372, 409
PleI GAGTC 1 cut(s) 357
PpsI GAGTC 1 cut(s) 357
PspN4I GGNNCC 1 cut(s) 392
SatI GCNGC 2 cut(s) 371, 408
Sau3AI GATC 1 cut(s) 21
SchI GAGTC 1 cut(s) 358
SetI ASST 7 cut(s) 130, 204, 270, 294, 372, 392, 405
SfaNI GCATC 2 cut(s) 221, 291
SfcI CTRYAG 1 cut(s) 385
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 2 cut(s) 17, 416
SspMI CTAG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 89
TaiI ACGT 1 cut(s) 405
TasI AATT 2 cut(s) 17, 416
TfiI GAWTC 1 cut(s) 71
TscAI CASTG 2 cut(s) 226, 259
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 2 cut(s) 370, 407
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 2 cut(s) 230, 288
TspRI CASTG 2 cut(s) 226, 259
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.