Rw3G003520

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
2989797 .. 2991103
1307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G003520.1

Sequence Viewer

Length: 1269 bp
ATGTCTTTTGTATCTCTTTTTCTTGTGGTCATTTTCATGATATTTGCCGCCGGTCGTACTTCTCCACCGATGGCCCAAGCTCAGAGTTTCACTATATCAACGAGATTGACCAACACGAGTACTAGTGCTTTCAGACACAAACTTCGTCAAAAGCTACTATCCCAAACCACAGAAACTCGACCCCTTAATCTTGATCCAGGCATGCGCCCACATTGGGACTCCCCCACTCACCATCAACCTTGCTTGGACACCCTCTTTCCATTCACTTGGGTTCAGTCAGTGGATTGCCAAAAATGCTTCAACGTTTCACCCCCATTTTCCAACTTTGACCCCAAGAAGTCCACCACTTTTCAACTTCTCCCTCCAACCAACACCACCATCTGCTCGCCACCTCTCGCTCATCTATCGGCCGGTGCTGGATCGTCGTGTGTTTACGACGCTGGGTATAGCAGGGGCATATATGGAATCGACGAGTTCCATTTGTTGTCTCCCCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCAACTAATCTAATTGCATTCGGCTGTGGGATCCGCTCCATGGTGGACTTCGATGGGGGGTGGGGGTACAACCCTATCGGAGGGATGATAGGGTTAGGAAAAGGGCACCCTTCCAGCATTGTAAGCCAACTAGGCTCCGACCGTTTCTCTTACTGCCTTCCCGGCCGGTCTGATTCACACTCCGGCCAGCCAACCCTCAACTTCGGCTCTGATGCCTTTATTGATGCTAGTGCAACAAATGTACAAACAACTCCAATCTCCGGCCACGAGTACTACAATTACCTCAACTTGACCACCATAACTGTAAACGGAGATGTCGTGTACATCATGCCAGAAACCAGCTCTAGAGCAAAGCTTGTGCTCTTGGACACAGGAGAACCAACCACCTGGTTTGTTGAGGACGCCTATTATGGTCTGCAAGACGGCCTTGTGAGGTACTTTGCAGAGATTTACGGTTGGAAGGAGCCCAAGATAGTTTATCCTAGTGTTTACGATTTGTGTTACGATCTTCCGACTAATATGTCTAGCATCGTTTTCCCAAAAGTTGCTATACAGTTCCTAGGTGGGGCTAGTTTAGATCTGCAGGATGCTTTTAAGATCTTCCCGGATGAGCATCGGTTTTGCATGGTCTTAAAGGAAGGTGCTCCAAATGTGGTAGGTGTTTACCAGCAGATGGGTTATAGATTCTTGTTTGATCTCGCTCAGTCCAAGCTCTCTTTTGCTCCGAACATGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

422

Amino Acids

46.34

Weight (kDa)

5.91

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 80 - 247 1.2e-14 Xylanase inhibitor N-terminal
TAXi_C PF14541 271 - 418 5.5e-16 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1051
AccB1I GGYRCC 1 cut(s) 636
AccB7I CCANNNNNTGG 1 cut(s) 1204
AccBSI CCGCTC 1 cut(s) 567
AciI CCGC 2 cut(s) 48, 565
AclI AACGTT 1 cut(s) 303
AclWI GGATC 4 cut(s) 188, 427, 556, 569
AcoI YGGCCR 4 cut(s) 408, 694, 715, 793
AcyI GRCGYC 1 cut(s) 933
AfaI GTAC 7 cut(s) 58, 121, 599, 774, 803, 854, 968
AfiI CCNNNNNNNGG 6 cut(s) 214, 571, 611, 791, 1096, 1204
AflIII ACRYGT 1 cut(s) 1260
AgsI TTSAA 3 cut(s) 301, 353, 534
AhlI ACTAGT 1 cut(s) 122
AjnI CCWGG 2 cut(s) 196, 917
AluBI AGCT 5 cut(s) 80, 154, 873, 886, 1243
AluI AGCT 5 cut(s) 80, 154, 873, 886, 1243
Alw21I GWGCWC 2 cut(s) 894, 1177
Alw26I GTCTC 1 cut(s) 492
AlwI GGATC 4 cut(s) 188, 427, 556, 569
AoxI GGCC 6 cut(s) 72, 408, 694, 715, 793, 955
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
AspA2I CCTAGG 1 cut(s) 1090
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 73
AsuC2I CCSGG 2 cut(s) 693, 1136
AsuHPI GGTGA 2 cut(s) 221, 300
AvrII CCTAGG 1 cut(s) 1090
BaeGI GKGCMC 1 cut(s) 639
BamHI GGATCC 1 cut(s) 561
BanI GGYRCC 1 cut(s) 636
BanII GRGCYC 1 cut(s) 999
BauI CACGAG 2 cut(s) 115, 797
Bbv12I GWGCWC 2 cut(s) 894, 1177
BccI CCATC 5 cut(s) 64, 240, 386, 578, 1198
BceAI ACGGC 1 cut(s) 970
BciT130I CCWGG 2 cut(s) 198, 919
BcnI CCSGG 2 cut(s) 693, 1136
BcoDI GTCTC 1 cut(s) 492
BcuI ACTAGT 1 cut(s) 122
BfaI CTAG 8 cut(s) 123, 662, 759, 876, 1014, 1056, 1091, 1101
BfmI CTRYAG 1 cut(s) 1112
BglI GCCNNNNNGGC 2 cut(s) 663, 693
BglII AGATCT 2 cut(s) 1108, 1128
BisI GCNGC 1 cut(s) 48
BlnI CCTAGG 1 cut(s) 1090
BlsI GCNGC 1 cut(s) 49
BmcAI AGTACT 2 cut(s) 121, 803
Bme1390I CCNGG 4 cut(s) 198, 693, 919, 1136
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 4 cut(s) 563, 638, 667, 996
BmrFI CCNGG 4 cut(s) 198, 693, 919, 1136
BmsI GCATC 5 cut(s) 733, 745, 1068, 1108, 1153
BpuMI CCSGG 2 cut(s) 693, 1136
BsaBI GATNNNNATC 1 cut(s) 1143
BsaHI GRCGYC 1 cut(s) 933
BsaJI CCNNGG 2 cut(s) 570, 1090
BsaXI ACNNNNNCTCC 2 cut(s) 834, 864
Bsc4I CCNNNNNNNGG 6 cut(s) 214, 571, 611, 791, 1096, 1204
Bse118I RCCGGY 3 cut(s) 50, 410, 696
Bse8I GATNNNNATC 1 cut(s) 1143
BseBI CCWGG 2 cut(s) 198, 919
BseDI CCNNGG 2 cut(s) 570, 1090
BseGI GGATG 3 cut(s) 621, 1123, 1144
BseJI GATNNNNATC 1 cut(s) 1143
BseLI CCNNNNNNNGG 6 cut(s) 214, 571, 611, 791, 1096, 1204
BseMII CTCAG 2 cut(s) 95, 1247
BseSI GKGCMC 1 cut(s) 639
BseX3I CGGCCG 2 cut(s) 408, 694
BseYI CCCAGC 1 cut(s) 440
Bsh1285I CGRYCG 4 cut(s) 55, 411, 673, 697
BshFI GGCC 6 cut(s) 74, 410, 696, 717, 795, 957
BshNI GGYRCC 1 cut(s) 636
BsiEI CGRYCG 4 cut(s) 55, 411, 673, 697
BsiHKAI GWGCWC 2 cut(s) 894, 1177
BsiSI CCGG 7 cut(s) 51, 411, 693, 697, 714, 792, 1136
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 6 cut(s) 214, 571, 611, 791, 1096, 1204
BsmAI GTCTC 1 cut(s) 492
BsmFI GGGAC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 6 cut(s) 74, 410, 696, 717, 795, 957
Bsp1286I GDGCHC 4 cut(s) 639, 894, 999, 1177
Bsp1407I TGTACA 2 cut(s) 772, 852
Bsp143I GATC 7 cut(s) 193, 419, 561, 1036, 1108, 1128, 1225
Bsp19I CCATGG 1 cut(s) 570
BspACI CCGC 2 cut(s) 48, 565
BspANI GGCC 6 cut(s) 74, 410, 696, 717, 795, 957
BspCNI CTCAG 2 cut(s) 94, 1246
BspHI TCATGA 1 cut(s) 36
BspLI GGNNCC 4 cut(s) 563, 638, 667, 996
BspMAI CTGCAG 1 cut(s) 1116
BspPI GGATC 4 cut(s) 188, 427, 556, 569
BspT107I GGYRCC 1 cut(s) 636
BsrBI CCGCTC 1 cut(s) 567
BsrFI RCCGGY 3 cut(s) 50, 410, 696
BsrGI TGTACA 2 cut(s) 772, 852
BssAI RCCGGY 3 cut(s) 50, 410, 696
BssECI CCNNGG 2 cut(s) 570, 1090
BssMI GATC 7 cut(s) 193, 419, 561, 1036, 1108, 1128, 1225
BssNI GRCGYC 1 cut(s) 933
BssSI CACGAG 2 cut(s) 115, 797
BssT1I CCWWGG 2 cut(s) 570, 1090
Bst2BI CACGAG 2 cut(s) 115, 797
Bst2UI CCWGG 2 cut(s) 198, 919
Bst4CI ACNGT 4 cut(s) 674, 835, 986, 1086
Bst6I CTCTTC 1 cut(s) 535
BstACI GRCGYC 1 cut(s) 933
BstAUI TGTACA 2 cut(s) 772, 852
BstC8I GCNNGC 3 cut(s) 203, 386, 719
BstDEI CTNAG 2 cut(s) 81, 1233
BstDSI CCRYGG 1 cut(s) 570
BstENI CCTNNNNNAGG 1 cut(s) 609
BstF5I GGATG 3 cut(s) 621, 1123, 1144
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 7 cut(s) 196, 422, 564, 1039, 1111, 1131, 1228
BstMAI GTCTC 1 cut(s) 492
BstMBI GATC 7 cut(s) 193, 419, 561, 1036, 1108, 1128, 1225
BstMCI CGRYCG 4 cut(s) 55, 411, 673, 697
BstMWI GCNNNNNNNGC 4 cut(s) 294, 654, 663, 693
BstNI CCWGG 2 cut(s) 198, 919
BstNSI RCATGY 2 cut(s) 205, 1264
BstSCI CCNGG 4 cut(s) 196, 691, 917, 1134
BstSFI CTRYAG 1 cut(s) 1112
BstSLI GKGCMC 1 cut(s) 639
BstX2I RGATCY 3 cut(s) 561, 1108, 1128
BstXI CCANNNNNNTGG 2 cut(s) 267, 918
BstYI RGATCY 3 cut(s) 561, 1108, 1128
BstZI CGGCCG 2 cut(s) 408, 694
BsuRI GGCC 6 cut(s) 74, 410, 696, 717, 795, 957
BtgI CCRYGG 1 cut(s) 570
BtsCI GGATG 3 cut(s) 621, 1123, 1144
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 3 cut(s) 203, 386, 719
CciI TCATGA 1 cut(s) 36
CfoI GCGC 1 cut(s) 207
Cfr10I RCCGGY 3 cut(s) 50, 410, 696
Cfr13I GGNCC 1 cut(s) 73
CseI GACGC 2 cut(s) 446, 941
CsiI ACCWGGT 1 cut(s) 917
Csp6I GTAC 7 cut(s) 57, 120, 598, 773, 802, 853, 967
CspCI CAANNNNNGTGG 2 cut(s) 904, 939
CviAII CATG 6 cut(s) 37, 202, 571, 859, 1156, 1261
CviQI GTAC 7 cut(s) 57, 120, 598, 773, 802, 853, 967
DdeI CTNAG 2 cut(s) 81, 1233
DpnI GATC 7 cut(s) 195, 421, 563, 1038, 1110, 1130, 1227
DpnII GATC 7 cut(s) 193, 419, 561, 1036, 1108, 1128, 1225
DrdI GACNNNNNNGTC 1 cut(s) 1051
DseDI GACNNNNNNGTC 1 cut(s) 1051
EaeI YGGCCR 4 cut(s) 408, 694, 715, 793
EagI CGGCCG 2 cut(s) 408, 694
Eam1104I CTCTTC 1 cut(s) 535
EarI CTCTTC 1 cut(s) 535
EclXI CGGCCG 2 cut(s) 408, 694
Eco130I CCWWGG 2 cut(s) 570, 1090
Eco24I GRGCYC 1 cut(s) 999
Eco52I CGGCCG 2 cut(s) 408, 694
EcoNI CCTNNNNNAGG 1 cut(s) 609
EcoRII CCWGG 2 cut(s) 196, 917
EcoT14I CCWWGG 2 cut(s) 570, 1090
EcoT38I GRGCYC 1 cut(s) 999
ErhI CCWWGG 2 cut(s) 570, 1090
FaeI CATG 6 cut(s) 40, 205, 574, 862, 1159, 1264
FalI AAGNNNNNCTT 2 cut(s) 942, 974
FaqI GGGAC 1 cut(s) 230
FatI CATG 6 cut(s) 36, 201, 570, 858, 1155, 1260
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 3 cut(s) 628, 1130, 1151
FriOI GRGCYC 1 cut(s) 999
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 8 cut(s) 123, 662, 759, 876, 1014, 1056, 1091, 1101
GlaI GCGC 1 cut(s) 206
GluI GCNGC 1 cut(s) 48
GsaI CCCAGC 1 cut(s) 444
HaeIII GGCC 6 cut(s) 74, 410, 696, 717, 795, 957
HapII CCGG 7 cut(s) 51, 411, 693, 697, 714, 792, 1136
HgaI GACGC 2 cut(s) 446, 941
HhaI GCGC 1 cut(s) 207
Hin1I GRCGYC 1 cut(s) 933
Hin1II CATG 6 cut(s) 40, 205, 574, 862, 1159, 1264
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 4 cut(s) 218, 465, 704, 1215
HpaII CCGG 7 cut(s) 51, 411, 693, 697, 714, 792, 1136
HphI GGTGA 2 cut(s) 221, 300
Hpy166II GTNNAC 7 cut(s) 342, 433, 577, 838, 853, 1021, 1195
Hpy188I TCNGA 8 cut(s) 84, 134, 611, 670, 703, 742, 1044, 1257
Hpy188III TCNNGA 3 cut(s) 37, 191, 876
Hpy8I GTNNAC 7 cut(s) 342, 433, 577, 838, 853, 1021, 1195
Hpy99I CGWCG 3 cut(s) 427, 440, 473
HpyAV CCTTC 4 cut(s) 651, 698, 985, 1163
HpyCH4III ACNGT 4 cut(s) 674, 835, 986, 1086
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 6 cut(s) 548, 764, 949, 974, 1114, 1155
HpyF10VI GCNNNNNNNGC 4 cut(s) 294, 654, 663, 693
HpyF3I CTNAG 2 cut(s) 81, 1233
HpySE526I ACGT 1 cut(s) 303
Hsp92I GRCGYC 1 cut(s) 933
Hsp92II CATG 6 cut(s) 40, 205, 574, 862, 1159, 1264
HspAI GCGC 1 cut(s) 205
Kzo9I GATC 7 cut(s) 193, 419, 561, 1036, 1108, 1128, 1225
LmnI GCTCC 5 cut(s) 572, 671, 994, 1180, 1258
LweI GCATC 5 cut(s) 733, 745, 1068, 1108, 1153
MabI ACCWGGT 1 cut(s) 917
MaeI CTAG 8 cut(s) 123, 662, 759, 876, 1014, 1056, 1091, 1101
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 1031
MalI GATC 7 cut(s) 195, 421, 563, 1038, 1110, 1130, 1227
MbiI CCGCTC 1 cut(s) 567
MboI GATC 7 cut(s) 193, 419, 561, 1036, 1108, 1128, 1225
MboII GAAGA 3 cut(s) 522, 1031, 1123
MflI RGATCY 3 cut(s) 561, 1108, 1128
MhlI GDGCHC 4 cut(s) 639, 894, 999, 1177
MluCI AATT 2 cut(s) 543, 808
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 5 cut(s) 345, 389, 693, 968, 1067
MseI TTAA 4 cut(s) 186, 1125, 1163, 1267
MslI CAYNNNNRTG 1 cut(s) 35
MspI CCGG 7 cut(s) 51, 411, 693, 697, 714, 792, 1136
MspR9I CCNGG 4 cut(s) 198, 693, 919, 1136
Mva1269I GAATGC 1 cut(s) 548
MvaI CCWGG 2 cut(s) 198, 919
MwoI GCNNNNNNNGC 4 cut(s) 294, 654, 663, 693
NciI CCSGG 2 cut(s) 693, 1136
NcoI CCATGG 1 cut(s) 570
NdeII GATC 7 cut(s) 193, 419, 561, 1036, 1108, 1128, 1225
NlaIII CATG 6 cut(s) 40, 205, 574, 862, 1159, 1264
NlaIV GGNNCC 4 cut(s) 563, 638, 667, 996
NspI RCATGY 2 cut(s) 205, 1264
PaeI GCATGC 1 cut(s) 205
PagI TCATGA 1 cut(s) 36
PciI ACATGT 1 cut(s) 1260
PcsI WCGNNNNNNNCGW 1 cut(s) 846
PctI GAATGC 1 cut(s) 548
PfeI GAWTC 3 cut(s) 465, 704, 1215
PflMI CCANNNNNTGG 1 cut(s) 1204
PfoI TCCNGGA 1 cut(s) 1134
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PscI ACATGT 1 cut(s) 1260
Psp1406I AACGTT 1 cut(s) 303
Psp6I CCWGG 2 cut(s) 196, 917
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 2 cut(s) 196, 917
PspN4I GGNNCC 4 cut(s) 563, 638, 667, 996
PspPI GGNCC 1 cut(s) 73
PstI CTGCAG 1 cut(s) 1116
PsuI RGATCY 3 cut(s) 561, 1108, 1128
RsaI GTAC 7 cut(s) 58, 121, 599, 774, 803, 854, 968
RsaNI GTAC 7 cut(s) 57, 120, 598, 773, 802, 853, 967
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 4 cut(s) 186, 1125, 1163, 1267
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 7 cut(s) 193, 419, 561, 1036, 1108, 1128, 1225
Sau96I GGNCC 1 cut(s) 73
ScaI AGTACT 2 cut(s) 121, 803
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 4 cut(s) 198, 693, 919, 1136
SduI GDGCHC 4 cut(s) 639, 894, 999, 1177
SexAI ACCWGGT 1 cut(s) 917
SfaNI GCATC 5 cut(s) 733, 745, 1068, 1108, 1153
SfcI CTRYAG 1 cut(s) 1112
SmiMI CAYNNNNRTG 1 cut(s) 35
SpeI ACTAGT 1 cut(s) 122
SphI GCATGC 1 cut(s) 205
Sse9I AATT 2 cut(s) 543, 808
SsiI CCGC 2 cut(s) 48, 565
SspMI CTAG 8 cut(s) 123, 662, 759, 876, 1014, 1056, 1091, 1101
StyD4I CCNGG 4 cut(s) 196, 691, 917, 1134
StyI CCWWGG 2 cut(s) 570, 1090
TaaI ACNGT 4 cut(s) 674, 835, 986, 1086
TaiI ACGT 1 cut(s) 306
TaqI TCGA 3 cut(s) 178, 468, 582
TasI AATT 2 cut(s) 543, 808
TatI WGTACW 4 cut(s) 119, 772, 801, 852
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 3 cut(s) 465, 704, 1215
Tru1I TTAA 4 cut(s) 186, 1125, 1163, 1267
Tru9I TTAA 4 cut(s) 186, 1125, 1163, 1267
TscAI CASTG 1 cut(s) 285
TspDTI ATGAA 1 cut(s) 25
TspGWI ACGGA 1 cut(s) 855
TspRI CASTG 1 cut(s) 285
Van91I CCANNNNNTGG 1 cut(s) 1204
XagI CCTNNNNNAGG 1 cut(s) 609
XbaI TCTAGA 1 cut(s) 875
XceI RCATGY 2 cut(s) 205, 1264
XmaJI CCTAGG 1 cut(s) 1090
XspI CTAG 8 cut(s) 123, 662, 759, 876, 1014, 1056, 1091, 1101
ZrmI AGTACT 2 cut(s) 121, 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.