Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005185

Physical Location & Seq

Genomic Coordinates Forward (+)

30210249 .. 30211377

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGATCTGGAGAGGCAGAAGTTTCTCGGAGGAGGAAGGTTTTCAGGGCCGCCTATTGAGTTTCAATGCGACCCTCCCCCTAGATGAATCTACCACTTTCCAGGAGTTCCCTGACCTGAACGAAGTCTGTTTCATGATGATCCGAGTCCAAGATTCCGGCGTGCCTAATGTTCTAGGAAGACTGAACCAAATCAAAGTTGGGACTTGCATATGGTTGGGTGCCCAAAGATTGTCTGTGTTTAAAAGAGATTTCGAGTGTTGTAGGCTAACAAGTGGGCACGATCCGATTAGCGAGTGGTTGATGGGTCTCCTCAGCTCAAGTTGTGCCACAAGACGCCCACAGAGAGGTAGTGGAGGAAAAGAGGAATCCAATGTCACTGATGTTGCTGCAATCCACCACCAGATGACGAAGATATCACCGTTTTGCAAAAACGTGTCGGGTCAAGTCGCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Asp TAXi_C TAXi_N

Protein Analysis

152

Amino Acids

16.82

Weight (kDa)

6.81

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005185)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34990 FvH4_3g35000 FvH4_5g18970 FvH4_6g04130 FvH4_6g08260
malus_domestica	MD02G1129300.v1.1 MD04G1217500.v1.1 MD12G1123700.v1.1 MD12G1232300.v1.1
prunus_persica	Prupe.5G037200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0452701 RchiOBHm_Chr3g0452711
rosa_laevigata	RLG00000000901 RLG00000025573
rosa_roxburghii	Rroxscaffold_3G00222790 Rroxscaffold_6G00429720
rosa_rugosa	Rorug02G0642700 Rorug02G0642800 Rorug07G0314700
rosa_samantha	Rh3BG047400 Rh3BG047500 Rh3CG045900 Rh3CG046000 Rh3DG046200 Rh3DG046300 Rh7AG470200 Rh7AG470300 Rh7BG440300
rosa_wichuraiana	Rw3G003510 Rw3G003520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AciI	CCGC	1 cut(s)	49
AclWI	GGATC	2 cut(s)	133, 275
AcyI	GRCGYC	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	344
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	1 cut(s)	315
AluI	AGCT	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	2 cut(s)	133, 275
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	386
Asp700I	GAANNNNTTC	1 cut(s)	39
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	408
BaeGI	GKGCMC	2 cut(s)	223, 279
BanI	GGYRCC	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	184
BbvCI	CCTCAGC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	1 cut(s)	295
BciT130I	CCWGG	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	2 cut(s)	80, 173
BisI	GCNGC	2 cut(s)	49, 387
BlsI	GCNGC	2 cut(s)	50, 388
Bme1390I	CCNGG	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	28
Bpu10I	CCTNAGC	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	301
BsaHI	GRCGYC	1 cut(s)	334
BsaI	GGTCTC	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMII	CTCAG	1 cut(s)	325
BseRI	GAGGAG	2 cut(s)	44, 299
BseSI	GKGCMC	2 cut(s)	223, 279
BseXI	GCAGC	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	449
BshFI	GGCC	1 cut(s)	48
BshNI	GGYRCC	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	48
Bso31I	GGTCTC	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	223, 279
Bsp143I	GATC	3 cut(s)	3, 138, 280
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	324
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	220
BspPI	GGATC	2 cut(s)	133, 275
BspT107I	GGYRCC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	311
BssMI	GATC	3 cut(s)	3, 138, 280
BssNI	GRCGYC	1 cut(s)	334
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	420
BstACI	GRCGYC	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	311
BstKTI	GATC	3 cut(s)	6, 141, 283
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	3 cut(s)	3, 138, 280
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstSLI	GKGCMC	2 cut(s)	223, 279
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	161
CciI	TCATGA	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	46
CseI	GACGC	1 cut(s)	342
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	3 cut(s)	48, 265, 315
CviKI_1	RGCY	3 cut(s)	48, 265, 315
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	3 cut(s)	5, 140, 282
DpnII	GATC	3 cut(s)	3, 138, 280
DraI	TTTAAA	1 cut(s)	241
Eco31I	GGTCTC	1 cut(s)	311
Eco32I	GATATC	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	99
EcoRV	GATATC	1 cut(s)	414
FaeI	CATG	1 cut(s)	136
FaiI	YATR	3 cut(s)	134, 209, 211
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	1 cut(s)	132
FauNDI	CATATG	1 cut(s)	209
Fnu4HI	GCNGC	2 cut(s)	49, 387
Fsp4HI	GCNGC	2 cut(s)	49, 387
FspBI	CTAG	2 cut(s)	80, 173
GluI	GCNGC	2 cut(s)	49, 387
GsaI	CCCAGC	1 cut(s)	453
GsuI	CTGGAG	1 cut(s)	28
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	342
Hin1I	GRCGYC	1 cut(s)	334
Hin1II	CATG	1 cut(s)	136
HinfI	GANTC	4 cut(s)	86, 144, 152, 365
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	1 cut(s)	408
Hpy188I	TCNGA	3 cut(s)	28, 143, 285
Hpy188III	TCNNGA	2 cut(s)	7, 133
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	3 cut(s)	207, 389, 426
HpyF3I	CTNAG	1 cut(s)	311
HpySE526I	ACGT	1 cut(s)	432
Hsp92I	GRCGYC	1 cut(s)	334
Hsp92II	CATG	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	3, 138, 280
LpnPI	CCDG	8 cut(s)	29, 86, 113, 123, 128, 169, 413, 435
Lsp1109I	GCAGC	1 cut(s)	373
MaeI	CTAG	2 cut(s)	80, 173
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	3 cut(s)	5, 140, 282
MboI	GATC	3 cut(s)	3, 138, 280
MboII	GAAGA	2 cut(s)	189, 421
MhlI	GDGCHC	2 cut(s)	223, 279
MlyI	GAGTC	1 cut(s)	153
MnlI	CCTC	8 cut(s)	5, 22, 25, 83, 320, 338, 347, 355
MroXI	GAANNNNTTC	1 cut(s)	39
MseI	TTAA	1 cut(s)	240
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
NdeI	CATATG	1 cut(s)	209
NdeII	GATC	3 cut(s)	3, 138, 280
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	373
PagI	TCATGA	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	3 cut(s)	86, 152, 365
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	2 cut(s)	50, 388
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	49, 387
Sau3AI	GATC	3 cut(s)	3, 138, 280
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	2 cut(s)	223, 279
SetI	ASST	5 cut(s)	40, 117, 317, 349, 435
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
SsiI	CCGC	1 cut(s)	49
SspMI	CTAG	2 cut(s)	80, 173
StyD4I	CCNGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	420
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	1 cut(s)	252
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	3 cut(s)	86, 152, 365
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	2 cut(s)	99, 121
TspRI	CASTG	1 cut(s)	382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	2 cut(s)	80, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.