RLG00000025573

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
46784311 .. 46786990
2680 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025573

Sequence Viewer

Length: 1284 bp
ATGTCTTTTGTATCTCTTTTTCTTGTGGTCATTTTCATGATATTTGCCGCCGGTGGTACTTCTCCACCGATGGCCCAAGCTCAGAGTTTCACTATATCAACGAGATTGACCAACACGAGTACTAATGCTTTCAGACACAAACTTCGTCAAAAGCTACTATCCCAAACCACAGAAACTCGACTCCTTAATCTTGATCCAGGCATAGTCTTCCCTGCTCTCCCGTCCGGCATGGTCTACGTAAGCGCCCACATTGGGACTCCTCCAATCACCATCAACCTTGCTTTGGACACCCTCTTTCCATTCACTTGGGTTCAGTCAGTGGATTGCCAAAAATGCTTCAACGTTTCACCCCCATTTTCCAACTTTGACCCCAAGAAGTCCACCACTTTCCAACTTCTCCCTCCAACGAACACCACCATCTGCTCGCCACCTGTCGCTCATCCATCGGCCAGTGCTGGATCGTCGTGTGTTTACGACGCTGGGTATAGCATGGGCATATTTGGAATCGACGAGTTCCATTTGTTGTCTCCCCACTCCTCCTCCTCTTCAACTAATCTAATTGCATTCGGCTGTGGGACACGCTCCATGGTGGACTTCGATGGAGGGTGGGAATACAACCCTATCGGAGGGATGATAGGGTTAGGAAAAGGGCACCCTTCCAGCATTGTAAGCCAAATAGGCTCCGACCGTTTCTCTTACTGCCTTCCCGGCCGGTCTGATTCACGCTCCGGCCAGCCAACCCTCAACTTCGGCTCTGATGCCTTTATTGATGCTAGTGCTACAAATGTACAAACAACTCCGATCTCCGGCCACGAGTACTACAATTACCTCAACTTGACCACCATAACTGTAAACGGAGATGTCGTGTACATCATGCCAGAAACCAGCTCTAGAGCAAAGCTTGTGCTCTTGGACACAGGAGAACCAACCACCTGGTTTGTTGAGGACGCCTACTATGGTCTGCAAGACGGCCTTGTGAGGTACTTTGCAGAGACTTATGGTTGGAAAGAGCCCAAGATAGTTTATCCTAGTGTTTACGATTTGTGTTACGATCTTCCGACTAATATGTCTAGCATCGTTTTCCCAAAAGTTGCTATACAGTTCCTAGGTGGGGCTAGTTTAGATCTGCAGGATGCTTTTAAGATCTTCCCGGATGAGCATCAGTTTTGCATGGTCTTAAGGGAAGGTGCTCCAAACGTAGTAGGTGTTTACCAGCAGATGGGTTATAGATTCTTGTTTGATCTCGCTCAGTCCAAGCTCTCTTTTGCTCCTAACATGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

428

Amino Acids

46.69

Weight (kDa)

5.32

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 79 - 252 7.6e-23 Xylanase inhibitor N-terminal
TAXi_C PF14541 276 - 423 1.3e-16 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1066
AccB1I GGYRCC 1 cut(s) 651
AccB7I CCANNNNNTGG 1 cut(s) 1219
AccI GTMKAC 1 cut(s) 234
AciI CCGC 1 cut(s) 48
AclI AACGTT 1 cut(s) 342
AclWI GGATC 2 cut(s) 188, 466
AcoI YGGCCR 4 cut(s) 447, 709, 730, 808
AcyI GRCGYC 1 cut(s) 948
AfaI GTAC 6 cut(s) 58, 121, 789, 818, 869, 983
AfiI CCNNNNNNNGG 6 cut(s) 252, 283, 626, 806, 1111, 1219
AflII CTTAAG 1 cut(s) 1177
AflIII ACRYGT 1 cut(s) 1275
AgsI TTSAA 2 cut(s) 340, 549
AjnI CCWGG 2 cut(s) 196, 932
AluBI AGCT 5 cut(s) 80, 154, 888, 901, 1258
AluI AGCT 5 cut(s) 80, 154, 888, 901, 1258
Alw21I GWGCWC 2 cut(s) 909, 1192
Alw26I GTCTC 2 cut(s) 531, 986
AlwI GGATC 2 cut(s) 188, 466
AoxI GGCC 6 cut(s) 72, 447, 709, 730, 808, 970
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
AspA2I CCTAGG 1 cut(s) 1105
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 73
AsuC2I CCSGG 2 cut(s) 708, 1151
AsuHPI GGTGA 2 cut(s) 259, 339
AvrII CCTAGG 1 cut(s) 1105
BaeGI GKGCMC 1 cut(s) 654
BanI GGYRCC 1 cut(s) 651
BanII GRGCYC 1 cut(s) 1014
BauI CACGAG 2 cut(s) 115, 812
BbsI GAAGAC 1 cut(s) 199
Bbv12I GWGCWC 2 cut(s) 909, 1192
BccI CCATC 6 cut(s) 64, 278, 425, 451, 593, 1213
BceAI ACGGC 1 cut(s) 985
BciT130I CCWGG 2 cut(s) 198, 934
BcnI CCSGG 2 cut(s) 708, 1151
BcoDI GTCTC 2 cut(s) 531, 986
BfaI CTAG 6 cut(s) 774, 891, 1029, 1071, 1106, 1116
BfmI CTRYAG 1 cut(s) 1127
BfoI RGCGCY 1 cut(s) 246
BfrI CTTAAG 1 cut(s) 1177
BglI GCCNNNNNGGC 2 cut(s) 678, 708
BglII AGATCT 2 cut(s) 1123, 1143
BisI GCNGC 1 cut(s) 48
BlnI CCTAGG 1 cut(s) 1105
BlsI GCNGC 1 cut(s) 49
BmcAI AGTACT 2 cut(s) 121, 818
Bme1390I CCNGG 4 cut(s) 198, 708, 934, 1151
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 2 cut(s) 653, 682
BmrFI CCNGG 4 cut(s) 198, 708, 934, 1151
BmsI GCATC 5 cut(s) 748, 760, 1083, 1123, 1168
BpiI GAAGAC 1 cut(s) 199
BpuMI CCSGG 2 cut(s) 708, 1151
BsaAI YACGTR 1 cut(s) 238
BsaBI GATNNNNATC 1 cut(s) 1158
BsaHI GRCGYC 1 cut(s) 948
BsaJI CCNNGG 2 cut(s) 585, 1105
BsaXI ACNNNNNCTCC 4 cut(s) 524, 554, 849, 879
Bsc4I CCNNNNNNNGG 6 cut(s) 252, 283, 626, 806, 1111, 1219
Bse118I RCCGGY 2 cut(s) 50, 711
Bse1I ACTGG 1 cut(s) 450
Bse8I GATNNNNATC 1 cut(s) 1158
BseBI CCWGG 2 cut(s) 198, 934
BseDI CCNNGG 2 cut(s) 585, 1105
BseGI GGATG 4 cut(s) 439, 636, 1138, 1159
BseJI GATNNNNATC 1 cut(s) 1158
BseLI CCNNNNNNNGG 6 cut(s) 252, 283, 626, 806, 1111, 1219
BseMII CTCAG 2 cut(s) 95, 1262
BseNI ACTGG 1 cut(s) 450
BseRI GAGGAG 4 cut(s) 249, 526, 529, 532
BseSI GKGCMC 1 cut(s) 654
BseX3I CGGCCG 1 cut(s) 709
BseYI CCCAGC 1 cut(s) 479
Bsh1285I CGRYCG 2 cut(s) 688, 712
BshFI GGCC 6 cut(s) 74, 449, 711, 732, 810, 972
BshNI GGYRCC 1 cut(s) 651
BsiEI CGRYCG 2 cut(s) 688, 712
BsiHKAI GWGCWC 2 cut(s) 909, 1192
BsiSI CCGG 7 cut(s) 51, 225, 708, 712, 729, 807, 1151
BslFI GGGAC 2 cut(s) 268, 589
BslI CCNNNNNNNGG 6 cut(s) 252, 283, 626, 806, 1111, 1219
BsmAI GTCTC 2 cut(s) 531, 986
BsmFI GGGAC 2 cut(s) 268, 589
BsmI GAATGC 1 cut(s) 563
BsnI GGCC 6 cut(s) 74, 449, 711, 732, 810, 972
Bsp1286I GDGCHC 4 cut(s) 654, 909, 1014, 1192
Bsp1407I TGTACA 2 cut(s) 787, 867
Bsp143I GATC 7 cut(s) 193, 458, 801, 1051, 1123, 1143, 1240
Bsp19I CCATGG 1 cut(s) 585
BspACI CCGC 1 cut(s) 48
BspANI GGCC 6 cut(s) 74, 449, 711, 732, 810, 972
BspCNI CTCAG 2 cut(s) 94, 1261
BspHI TCATGA 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 653, 682
BspMAI CTGCAG 1 cut(s) 1131
BspPI GGATC 2 cut(s) 188, 466
BspT107I GGYRCC 1 cut(s) 651
BspTI CTTAAG 1 cut(s) 1177
BsrFI RCCGGY 2 cut(s) 50, 711
BsrGI TGTACA 2 cut(s) 787, 867
BsrI ACTGG 1 cut(s) 450
BssAI RCCGGY 2 cut(s) 50, 711
BssECI CCNNGG 2 cut(s) 585, 1105
BssMI GATC 7 cut(s) 193, 458, 801, 1051, 1123, 1143, 1240
BssNI GRCGYC 1 cut(s) 948
BssSI CACGAG 2 cut(s) 115, 812
BssT1I CCWWGG 2 cut(s) 585, 1105
Bst2BI CACGAG 2 cut(s) 115, 812
Bst2UI CCWGG 2 cut(s) 198, 934
Bst4CI ACNGT 3 cut(s) 689, 850, 1101
Bst6I CTCTTC 1 cut(s) 550
BstACI GRCGYC 1 cut(s) 948
BstAFI CTTAAG 1 cut(s) 1177
BstAUI TGTACA 2 cut(s) 787, 867
BstBAI YACGTR 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 425, 734
BstDEI CTNAG 2 cut(s) 81, 1248
BstDSI CCRYGG 1 cut(s) 585
BstENI CCTNNNNNAGG 1 cut(s) 624
BstF5I GGATG 4 cut(s) 439, 636, 1138, 1159
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 7 cut(s) 196, 461, 804, 1054, 1126, 1146, 1243
BstMAI GTCTC 2 cut(s) 531, 986
BstMBI GATC 7 cut(s) 193, 458, 801, 1051, 1123, 1143, 1240
BstMCI CGRYCG 2 cut(s) 688, 712
BstMWI GCNNNNNNNGC 4 cut(s) 333, 669, 678, 708
BstNI CCWGG 2 cut(s) 198, 934
BstNSI RCATGY 1 cut(s) 1279
BstSCI CCNGG 4 cut(s) 196, 706, 932, 1149
BstSFI CTRYAG 1 cut(s) 1127
BstSLI GKGCMC 1 cut(s) 654
BstSNI TACGTA 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 199
BstX2I RGATCY 2 cut(s) 1123, 1143
BstXI CCANNNNNNTGG 2 cut(s) 306, 933
BstYI RGATCY 2 cut(s) 1123, 1143
BstZI CGGCCG 1 cut(s) 709
BsuRI GGCC 6 cut(s) 74, 449, 711, 732, 810, 972
BtgI CCRYGG 1 cut(s) 585
BtsCI GGATG 4 cut(s) 439, 636, 1138, 1159
BtsIMutI CAGTG 2 cut(s) 324, 457
Cac8I GCNNGC 2 cut(s) 425, 734
CciI TCATGA 1 cut(s) 36
CfoI GCGC 1 cut(s) 245
Cfr10I RCCGGY 2 cut(s) 50, 711
Cfr13I GGNCC 1 cut(s) 73
CseI GACGC 2 cut(s) 485, 956
CsiI ACCWGGT 1 cut(s) 932
Csp6I GTAC 6 cut(s) 57, 120, 788, 817, 868, 982
CspCI CAANNNNNGTGG 2 cut(s) 919, 954
CviAII CATG 7 cut(s) 37, 229, 490, 586, 874, 1171, 1276
CviQI GTAC 6 cut(s) 57, 120, 788, 817, 868, 982
DdeI CTNAG 2 cut(s) 81, 1248
DpnI GATC 7 cut(s) 195, 460, 803, 1053, 1125, 1145, 1242
DpnII GATC 7 cut(s) 193, 458, 801, 1051, 1123, 1143, 1240
DrdI GACNNNNNNGTC 1 cut(s) 1066
DseDI GACNNNNNNGTC 1 cut(s) 1066
EaeI YGGCCR 4 cut(s) 447, 709, 730, 808
EagI CGGCCG 1 cut(s) 709
Eam1104I CTCTTC 1 cut(s) 550
EarI CTCTTC 1 cut(s) 550
EclXI CGGCCG 1 cut(s) 709
Eco105I TACGTA 1 cut(s) 238
Eco130I CCWWGG 2 cut(s) 585, 1105
Eco24I GRGCYC 1 cut(s) 1014
Eco52I CGGCCG 1 cut(s) 709
EcoNI CCTNNNNNAGG 1 cut(s) 624
EcoRII CCWGG 2 cut(s) 196, 932
EcoT14I CCWWGG 2 cut(s) 585, 1105
EcoT38I GRGCYC 1 cut(s) 1014
ErhI CCWWGG 2 cut(s) 585, 1105
FaeI CATG 7 cut(s) 40, 232, 493, 589, 877, 1174, 1279
FalI AAGNNNNNCTT 2 cut(s) 957, 989
FaqI GGGAC 2 cut(s) 268, 589
FatI CATG 7 cut(s) 36, 228, 489, 585, 873, 1170, 1275
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 4 cut(s) 426, 643, 1145, 1166
FriOI GRGCYC 1 cut(s) 1014
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 6 cut(s) 774, 891, 1029, 1071, 1106, 1116
GlaI GCGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 48
GsaI CCCAGC 1 cut(s) 483
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 6 cut(s) 74, 449, 711, 732, 810, 972
HapII CCGG 7 cut(s) 51, 225, 708, 712, 729, 807, 1151
HgaI GACGC 2 cut(s) 485, 956
HhaI GCGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 948
Hin1II CATG 7 cut(s) 40, 232, 493, 589, 877, 1174, 1279
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HindIII AAGCTT 1 cut(s) 899
HinfI GANTC 5 cut(s) 180, 256, 504, 719, 1230
HpaII CCGG 7 cut(s) 51, 225, 708, 712, 729, 807, 1151
HphI GGTGA 2 cut(s) 259, 339
Hpy166II GTNNAC 8 cut(s) 235, 381, 472, 592, 853, 868, 1036, 1210
Hpy188I TCNGA 8 cut(s) 84, 134, 626, 685, 718, 757, 801, 1059
Hpy188III TCNNGA 3 cut(s) 37, 191, 891
Hpy8I GTNNAC 8 cut(s) 235, 381, 472, 592, 853, 868, 1036, 1210
Hpy99I CGWCG 3 cut(s) 466, 479, 512
HpyAV CCTTC 3 cut(s) 666, 713, 1178
HpyCH4III ACNGT 3 cut(s) 689, 850, 1101
HpyCH4IV ACGT 3 cut(s) 237, 342, 1197
HpyCH4V TGCA 5 cut(s) 563, 964, 989, 1129, 1170
HpyF10VI GCNNNNNNNGC 4 cut(s) 333, 669, 678, 708
HpyF3I CTNAG 2 cut(s) 81, 1248
HpySE526I ACGT 3 cut(s) 237, 342, 1197
Hsp92I GRCGYC 1 cut(s) 948
Hsp92II CATG 7 cut(s) 40, 232, 493, 589, 877, 1174, 1279
HspAI GCGC 1 cut(s) 243
Kzo9I GATC 7 cut(s) 193, 458, 801, 1051, 1123, 1143, 1240
LmnI GCTCC 5 cut(s) 587, 686, 731, 1195, 1273
LweI GCATC 5 cut(s) 748, 760, 1083, 1123, 1168
MabI ACCWGGT 1 cut(s) 932
MaeI CTAG 6 cut(s) 774, 891, 1029, 1071, 1106, 1116
MaeII ACGT 3 cut(s) 237, 342, 1197
MaeIII GTNAC 1 cut(s) 1046
MalI GATC 7 cut(s) 195, 460, 803, 1053, 1125, 1145, 1242
MboI GATC 7 cut(s) 193, 458, 801, 1051, 1123, 1143, 1240
MboII GAAGA 4 cut(s) 199, 537, 1046, 1138
MflI RGATCY 2 cut(s) 1123, 1143
MhlI GDGCHC 4 cut(s) 654, 909, 1014, 1192
MluCI AATT 2 cut(s) 558, 823
MlyI GAGTC 2 cut(s) 174, 250
MmeI TCCRAC 6 cut(s) 384, 415, 428, 708, 983, 1082
MseI TTAA 3 cut(s) 186, 1140, 1178
MslI CAYNNNNRTG 1 cut(s) 35
MspCI CTTAAG 1 cut(s) 1177
MspI CCGG 7 cut(s) 51, 225, 708, 712, 729, 807, 1151
MspR9I CCNGG 4 cut(s) 198, 708, 934, 1151
Mva1269I GAATGC 1 cut(s) 563
MvaI CCWGG 2 cut(s) 198, 934
MwoI GCNNNNNNNGC 4 cut(s) 333, 669, 678, 708
NciI CCSGG 2 cut(s) 708, 1151
NcoI CCATGG 1 cut(s) 585
NdeII GATC 7 cut(s) 193, 458, 801, 1051, 1123, 1143, 1240
NlaIII CATG 7 cut(s) 40, 232, 493, 589, 877, 1174, 1279
NlaIV GGNNCC 2 cut(s) 653, 682
NspI RCATGY 1 cut(s) 1279
PagI TCATGA 1 cut(s) 36
PciI ACATGT 1 cut(s) 1275
PcsI WCGNNNNNNNCGW 1 cut(s) 861
PctI GAATGC 1 cut(s) 563
PfeI GAWTC 3 cut(s) 504, 719, 1230
PflMI CCANNNNNTGG 1 cut(s) 1219
PfoI TCCNGGA 1 cut(s) 1149
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 2 cut(s) 174, 250
PpsI GAGTC 2 cut(s) 174, 250
Ppu21I YACGTR 1 cut(s) 238
PscI ACATGT 1 cut(s) 1275
Psp1406I AACGTT 1 cut(s) 342
Psp6I CCWGG 2 cut(s) 196, 932
PspFI CCCAGC 1 cut(s) 479
PspGI CCWGG 2 cut(s) 196, 932
PspN4I GGNNCC 2 cut(s) 653, 682
PspPI GGNCC 1 cut(s) 73
PstI CTGCAG 1 cut(s) 1131
PsuI RGATCY 2 cut(s) 1123, 1143
RsaI GTAC 6 cut(s) 58, 121, 789, 818, 869, 983
RsaNI GTAC 6 cut(s) 57, 120, 788, 817, 868, 982
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 3 cut(s) 186, 1140, 1178
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 7 cut(s) 193, 458, 801, 1051, 1123, 1143, 1240
Sau96I GGNCC 1 cut(s) 73
ScaI AGTACT 2 cut(s) 121, 818
SchI GAGTC 2 cut(s) 174, 250
ScrFI CCNGG 4 cut(s) 198, 708, 934, 1151
SduI GDGCHC 4 cut(s) 654, 909, 1014, 1192
SexAI ACCWGGT 1 cut(s) 932
SfaNI GCATC 5 cut(s) 748, 760, 1083, 1123, 1168
SfcI CTRYAG 1 cut(s) 1127
SgrAI CRCCGGYG 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 1177
SmoI CTYRAG 1 cut(s) 1177
SnaBI TACGTA 1 cut(s) 238
Sse9I AATT 2 cut(s) 558, 823
SsiI CCGC 1 cut(s) 48
SspMI CTAG 6 cut(s) 774, 891, 1029, 1071, 1106, 1116
StyD4I CCNGG 4 cut(s) 196, 706, 932, 1149
StyI CCWWGG 2 cut(s) 585, 1105
TaaI ACNGT 3 cut(s) 689, 850, 1101
TaiI ACGT 3 cut(s) 240, 345, 1200
TaqI TCGA 3 cut(s) 178, 507, 597
TasI AATT 2 cut(s) 558, 823
TatI WGTACW 4 cut(s) 119, 787, 816, 867
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 3 cut(s) 504, 719, 1230
Tru1I TTAA 3 cut(s) 186, 1140, 1178
Tru9I TTAA 3 cut(s) 186, 1140, 1178
TscAI CASTG 2 cut(s) 324, 457
TspDTI ATGAA 1 cut(s) 25
TspGWI ACGGA 1 cut(s) 870
TspRI CASTG 2 cut(s) 324, 457
Van91I CCANNNNNTGG 1 cut(s) 1219
Vha464I CTTAAG 1 cut(s) 1177
XagI CCTNNNNNAGG 1 cut(s) 624
XbaI TCTAGA 1 cut(s) 890
XceI RCATGY 1 cut(s) 1279
XmaJI CCTAGG 1 cut(s) 1105
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 6 cut(s) 774, 891, 1029, 1071, 1106, 1116
ZrmI AGTACT 2 cut(s) 121, 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.