FvH4_3g35530

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
30531293 .. 30532762
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35530.t1

Sequence Viewer

Length: 216 bp
ATGAGGAAGTTCGATCCATGGCCGATTTTCTTCAAGAGGGAATGGAACCGCAACTGGCCCTTCCTCGTTGGGTTCGCCATCACCGGAACCATCATCACCAAGCTCTCTCTCGGCCTCACTGAGGAAGATGCCAAGAACTCACCCTTCGTTCAGAGGCACAAGAGGTACCTTTCGATTCTTATCTCTCAGAACTCATATTATTCAATTGGAATTTAA

Protein Analysis

72

Amino Acids

8.44

Weight (kDa)

9.99

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 165
AciI CCGC 1 cut(s) 49
AclWI GGATC 1 cut(s) 8
AcoI YGGCCR 1 cut(s) 20
AcsI RAATTY 1 cut(s) 210
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 2 cut(s) 34, 204
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
AlwI GGATC 1 cut(s) 8
AoxI GGCC 3 cut(s) 20, 56, 112
ApoI RAATTY 1 cut(s) 210
Asp718I GGTACC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 3 cut(s) 73, 88, 132
BanI GGYRCC 1 cut(s) 165
BccI CCATC 2 cut(s) 86, 98
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 3 cut(s) 47, 88, 167
BmsI GCATC 1 cut(s) 118
BsaBI GATNNNNATC 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 17
BsaWI WCCGGW 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 59
Bse8I GATNNNNATC 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 17
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 2 cut(s) 111, 200
BseNI ACTGG 1 cut(s) 59
BshFI GGCC 3 cut(s) 22, 58, 114
BshNI GGYRCC 1 cut(s) 165
BsiSI CCGG 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 121
BsnI GGCC 3 cut(s) 22, 58, 114
Bsp143I GATC 1 cut(s) 13
Bsp19I CCATGG 1 cut(s) 17
BspACI CCGC 1 cut(s) 49
BspANI GGCC 3 cut(s) 22, 58, 114
BspCNI CTCAG 2 cut(s) 112, 199
BspLI GGNNCC 3 cut(s) 47, 88, 167
BspPI GGATC 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 165
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 120, 186
BstDSI CCRYGG 1 cut(s) 17
BstENI CCTNNNNNAGG 1 cut(s) 119
BstKTI GATC 1 cut(s) 16
BstMBI GATC 1 cut(s) 13
BsuRI GGCC 3 cut(s) 22, 58, 114
BtgI CCRYGG 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 166
CviAII CATG 1 cut(s) 18
CviJI RGCY 4 cut(s) 22, 58, 103, 114
CviKI_1 RGCY 4 cut(s) 22, 58, 103, 114
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 2 cut(s) 120, 186
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 17
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 1 cut(s) 21
FaiI YATR 2 cut(s) 19, 196
FatI CATG 1 cut(s) 17
HaeIII GGCC 3 cut(s) 22, 58, 114
HapII CCGG 1 cut(s) 84
Hin1II CATG 1 cut(s) 21
HinfI GANTC 1 cut(s) 175
HpaII CCGG 1 cut(s) 84
HphI GGTGA 3 cut(s) 73, 88, 132
Hpy188I TCNGA 2 cut(s) 153, 189
Hpy188III TCNNGA 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 70, 154
HpyF3I CTNAG 2 cut(s) 120, 186
Hsp92II CATG 1 cut(s) 21
KpnI GGTACC 1 cut(s) 169
Kzo9I GATC 1 cut(s) 13
LpnPI CCDG 2 cut(s) 40, 97
LweI GCATC 1 cut(s) 118
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 2 cut(s) 22, 137
MfeI CAATTG 1 cut(s) 204
MluCI AATT 2 cut(s) 204, 210
MnlI CCTC 6 cut(s) 30, 74, 115, 125, 147, 156
MseI TTAA 1 cut(s) 214
MspI CCGG 1 cut(s) 84
MunI CAATTG 1 cut(s) 204
NcoI CCATGG 1 cut(s) 17
NdeII GATC 1 cut(s) 13
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 3 cut(s) 47, 88, 167
NmeAIII GCCGAG 1 cut(s) 90
PfeI GAWTC 1 cut(s) 175
PspN4I GGNNCC 3 cut(s) 47, 88, 167
PspPI GGNCC 1 cut(s) 57
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 214
Sau3AI GATC 1 cut(s) 13
Sau96I GGNCC 1 cut(s) 57
SetI ASST 3 cut(s) 105, 167, 171
SfaNI GCATC 1 cut(s) 118
SgeI CNNG 9 cut(s) 30, 46, 67, 77, 96, 112, 122, 145, 172
Sse9I AATT 2 cut(s) 204, 210
SsiI CCGC 1 cut(s) 49
StyI CCWWGG 1 cut(s) 17
TaqI TCGA 2 cut(s) 12, 173
TasI AATT 2 cut(s) 204, 210
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 1 cut(s) 214
Tru9I TTAA 1 cut(s) 214
TscAI CASTG 1 cut(s) 124
TspRI CASTG 1 cut(s) 124
XagI CCTNNNNNAGG 1 cut(s) 119
XapI RAATTY 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.