Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004115

Physical Location & Seq

Genomic Coordinates Forward (+)

15099366 .. 15100969

Gene Structure 1604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g15120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTTTGAAATATTAACCAAAAACCCAAGCCTACGGAGCTATAAAAGTCATTTTGTCACATGCCCCTCTTGGCTTTTGCCTTCGTACCAAAACAGCCGGTTTACAACCAGAGTCTGCGTTTCGGCTCCTTCCTGTTTGGTTAGAGAGAAGAGAAAGGAAAATCAAAAGATGCGAAAGTTCGATCCATGGCCGGTGTTCTTCAAGCGCGAGTGGAAACGGAACTGGCCGTTCCTGGTCGGTTTCGCCATCACCGGCACGCTCATCACCAAGTTCTCTCTCGGTCTCACCGAGGAGGACGCGAAGAATTCTCCGTTCGTGCAGAGGCATAAGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

13.33

Weight (kDa)

10.3

Isoelectric Point (pI)

61.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46430 AT5G59613 AT5G59613
fragaria_vesca	FvH4_3g35530
malus_domestica	MD01G1124900.v1.1 MD03G1096900.v1.1 MD11G1143400.v1.1
prunus_persica	Prupe.2G232300_v2.0.a1 Prupe.6G081200_v2.0.a1
pyrus_communis	pycom01g15120
rosa_chinensis	RchiOBHm_Chr1g0340881 RchiOBHm_Chr1g0360701 RchiOBHm_Chr1g0367621 RchiOBHm_Chr2g0162431 RchiOBHm_Chr3g0463581 RchiOBHm_Chr5g0063751 RchiOBHm_Chr6g0265721 RchiOBHm_Chr7g0198591 RchiOBHm_Chr7g0223231
rosa_laevigata	RLG00000035665
rosa_multiflora	Rmu_sc0005638.1_g000001 Rmu_ssc0000309.1_g000040
rosa_roxburghii	Rroxscaffold_1G00017110 Rroxscaffold_4G00320260
rosa_rugosa	Rorug01G0461200 Rorug05G0359100
rosa_samantha	Rh3AG123100
rosa_wichuraiana	Rw2G027430 Rw4G009610 Rw5G037380 Rw5G039260 Rw6G010810 Rw6G019310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	207, 299
AclWI	GGATC	1 cut(s)	176
AcoI	YGGCCR	2 cut(s)	188, 224
AcsI	RAATTY	1 cut(s)	304
AfaI	GTAC	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	8, 202
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	1 cut(s)	39
AluI	AGCT	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	1 cut(s)	176
AlwNI	CAGNNNCTG	1 cut(s)	114
AoxI	GGCC	2 cut(s)	188, 224
ApoI	RAATTY	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	207
AsuHPI	GGTGA	3 cut(s)	241, 256, 277
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	287
Bme1390I	CCNGG	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	185, 288
Bse118I	RCCGGY	3 cut(s)	96, 190, 251
Bse1I	ACTGG	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	185, 288
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	338
Bsh1236I	CGCG	2 cut(s)	207, 299
BshFI	GGCC	2 cut(s)	190, 226
BsiSI	CCGG	3 cut(s)	97, 191, 252
BsmAI	GTCTC	1 cut(s)	287
BsnI	GGCC	2 cut(s)	190, 226
Bso31I	GGTCTC	1 cut(s)	287
Bsp143I	GATC	1 cut(s)	181
Bsp19I	CCATGG	1 cut(s)	185
BspANI	GGCC	2 cut(s)	190, 226
BspFNI	CGCG	2 cut(s)	207, 299
BspLI	GGNNCC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	287
BsrFI	RCCGGY	3 cut(s)	96, 190, 251
BsrI	ACTGG	1 cut(s)	227
BssAI	RCCGGY	3 cut(s)	96, 190, 251
BssECI	CCNNGG	2 cut(s)	185, 288
BssMI	GATC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	257
BstDSI	CCRYGG	1 cut(s)	185
BstFNI	CGCG	2 cut(s)	207, 299
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	231
BstUI	CGCG	2 cut(s)	207, 299
BsuRI	GGCC	2 cut(s)	190, 226
BtgI	CCRYGG	1 cut(s)	185
Cac8I	GCNNGC	1 cut(s)	257
CaiI	CAGNNNCTG	1 cut(s)	114
CfoI	GCGC	1 cut(s)	207
Cfr10I	RCCGGY	3 cut(s)	96, 190, 251
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	2 cut(s)	60, 186
CviJI	RGCY	7 cut(s)	30, 39, 73, 96, 125, 190, 226
CviKI_1	RGCY	7 cut(s)	30, 39, 73, 96, 125, 190, 226
CviQI	GTAC	1 cut(s)	85
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
EaeI	YGGCCR	2 cut(s)	188, 224
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	185
Eco31I	GGTCTC	1 cut(s)	287
EcoRI	GAATTC	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	2 cut(s)	63, 189
FaiI	YATR	4 cut(s)	42, 61, 187, 327
FatI	CATG	2 cut(s)	59, 185
GlaI	GCGC	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	190, 226
HapII	CCGG	3 cut(s)	97, 191, 252
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	1 cut(s)	207
Hin1II	CATG	2 cut(s)	63, 189
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HinfI	GANTC	1 cut(s)	111
HpaII	CCGG	3 cut(s)	97, 191, 252
HphI	GGTGA	3 cut(s)	241, 256, 277
Hpy166II	GTNNAC	1 cut(s)	102
Hpy8I	GTNNAC	1 cut(s)	102
HpyAV	CCTTC	2 cut(s)	90, 138
HpyCH4V	TGCA	1 cut(s)	319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	63, 189
HspAI	GCGC	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	2 cut(s)	36, 130
LpnPI	CCDG	8 cut(s)	110, 121, 145, 204, 208, 218, 245, 265
LweI	GCATC	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	3 cut(s)	160, 190, 313
MluCI	AATT	1 cut(s)	304
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	4 cut(s)	76, 283, 286, 315
MseI	TTAA	1 cut(s)	14
MspI	CCGG	3 cut(s)	97, 191, 252
MspR9I	CCNGG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	2 cut(s)	207, 299
MwoI	GCNNNNNNNGC	1 cut(s)	36
NcoI	CCATGG	1 cut(s)	185
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	63, 189
NlaIV	GGNNCC	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	126
PstNI	CAGNNNCTG	1 cut(s)	114
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	14
Sau3AI	GATC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	1 cut(s)	233
SetI	ASST	1 cut(s)	41
SfaNI	GCATC	1 cut(s)	159
Sse9I	AATT	1 cut(s)	304
SspI	AATATT	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	185
TaqI	TCGA	1 cut(s)	180
TaqII	GACCGA	1 cut(s)	269
TasI	AATT	1 cut(s)	304
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspGWI	ACGGA	3 cut(s)	49, 232, 300
XapI	RAATTY	1 cut(s)	304
XceI	RCATGY	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.