Rroxscaffold_4G00320260

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
48903406 .. 48903561
156 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00320260.1

Sequence Viewer

Length: 156 bp
ATGAGAAAGTTCAATGCTTGGCCCGTGTTCTTCAAGCGCGAGTGGAATCGGAACTGGCCTTTCCTCATTGGCTTCGCCATCACCGAATTCTCATCACCAAGTTCTCTCTCTGTCTCACTTGGGTACTCCACTCCATTTCTCTTTCTCATTCTGTGA

Protein Analysis

51

Amino Acids

6.05

Weight (kDa)

10.27

Isoelectric Point (pI)

48.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 39
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 125
AgsI TTSAA 2 cut(s) 13, 34
Alw26I GTCTC 1 cut(s) 118
AoxI GGCC 2 cut(s) 20, 56
ApoI RAATTY 1 cut(s) 86
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 21
AsuHPI GGTGA 2 cut(s) 73, 87
BccI CCATC 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 22, 58
BsmAI GTCTC 1 cut(s) 118
BsnI GGCC 2 cut(s) 22, 58
BspANI GGCC 2 cut(s) 22, 58
BspFNI CGCG 1 cut(s) 39
BsrI ACTGG 1 cut(s) 59
BstFNI CGCG 1 cut(s) 39
BstHHI GCGC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 118
BstUI CGCG 1 cut(s) 39
BsuRI GGCC 2 cut(s) 22, 58
CfoI GCGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 124
CviJI RGCY 3 cut(s) 22, 58, 72
CviKI_1 RGCY 3 cut(s) 22, 58, 72
CviQI GTAC 1 cut(s) 124
EcoRI GAATTC 1 cut(s) 86
GlaI GCGC 1 cut(s) 38
HaeIII GGCC 2 cut(s) 22, 58
HhaI GCGC 1 cut(s) 39
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HinfI GANTC 1 cut(s) 46
HphI GGTGA 2 cut(s) 73, 87
Hpy188I TCNGA 1 cut(s) 51
HspAI GCGC 1 cut(s) 37
LpnPI CCDG 1 cut(s) 40
MboII GAAGA 1 cut(s) 22
MluCI AATT 1 cut(s) 86
MnlI CCTC 1 cut(s) 74
MvnI CGCG 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PfeI GAWTC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 21
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
Sau96I GGNCC 1 cut(s) 21
SgeI CNNG 9 cut(s) 30, 35, 37, 46, 50, 52, 67, 111, 131
Sse9I AATT 1 cut(s) 86
TasI AATT 1 cut(s) 86
TfiI GAWTC 1 cut(s) 46
XapI RAATTY 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.