Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000309.1

Orthogroup ID

OG0004115

Physical Location & Seq

Genomic Coordinates Reverse (-)

152124 .. 153620

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000309.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

atgagccgcacaacacacccacaaacgcaaacacagaacagtctgagagagagagaagagcaagagaaggcagaaatgaggaagttcgatccatggccgattttcttcaagcgagaatggaaccggaactggcctttcctcgccgggttcgccataaccggagccctcatcaccaagttctctctcggcctcactgaggaagatgccaagaactcacccttcgttcagaggcacaagaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

80

Amino Acids

9.59

Weight (kDa)

9.98

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46430 AT5G59613 AT5G59613
fragaria_vesca	FvH4_3g35530
malus_domestica	MD01G1124900.v1.1 MD03G1096900.v1.1 MD11G1143400.v1.1
prunus_persica	Prupe.2G232300_v2.0.a1 Prupe.6G081200_v2.0.a1
pyrus_communis	pycom01g15120
rosa_chinensis	RchiOBHm_Chr1g0340881 RchiOBHm_Chr1g0360701 RchiOBHm_Chr1g0367621 RchiOBHm_Chr2g0162431 RchiOBHm_Chr3g0463581 RchiOBHm_Chr5g0063751 RchiOBHm_Chr6g0265721 RchiOBHm_Chr7g0198591 RchiOBHm_Chr7g0223231
rosa_laevigata	RLG00000035665
rosa_multiflora	Rmu_sc0005638.1_g000001 Rmu_ssc0000309.1_g000040
rosa_roxburghii	Rroxscaffold_1G00017110 Rroxscaffold_4G00320260
rosa_rugosa	Rorug01G0461200 Rorug05G0359100
rosa_samantha	Rh3AG123100
rosa_wichuraiana	Rw2G027430 Rw4G009610 Rw5G037380 Rw5G039260 Rw6G010810 Rw6G019310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	7
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	109
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	3 cut(s)	95, 131, 187
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	2 cut(s)	163, 207
BanII	GRGCYC	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	145
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	145
BmiI	GGNNCC	2 cut(s)	122, 163
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	193
BpuMI	CCSGG	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	92
BsaWI	WCCGGW	2 cut(s)	123, 158
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	92
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	2 cut(s)	35, 186
BseNI	ACTGG	1 cut(s)	134
BshFI	GGCC	3 cut(s)	97, 133, 189
BsiSI	CCGG	3 cut(s)	124, 144, 159
BslI	CCNNNNNNNGG	1 cut(s)	196
BsnI	GGCC	3 cut(s)	97, 133, 189
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	88
Bsp19I	CCATGG	1 cut(s)	92
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	3 cut(s)	97, 133, 189
BspCNI	CTCAG	2 cut(s)	36, 187
BspLI	GGNNCC	2 cut(s)	122, 163
BspPI	GGATC	1 cut(s)	83
BspQI	GCTCTTC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	51
BstDEI	CTNAG	2 cut(s)	44, 195
BstDSI	CCRYGG	1 cut(s)	92
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	143
BsuRI	GGCC	3 cut(s)	97, 133, 189
BtgI	CCRYGG	1 cut(s)	92
BtsIMutI	CAGTG	1 cut(s)	192
CviAII	CATG	1 cut(s)	93
CviJI	RGCY	5 cut(s)	6, 97, 133, 164, 189
CviKI_1	RGCY	5 cut(s)	6, 97, 133, 164, 189
DdeI	CTNAG	2 cut(s)	44, 195
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	166
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	1 cut(s)	96
FaiI	YATR	2 cut(s)	94, 155
FatI	CATG	1 cut(s)	92
Fnu4HI	GCNGC	1 cut(s)	7
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	7
GluI	GCNGC	1 cut(s)	7
HaeIII	GGCC	3 cut(s)	97, 133, 189
HapII	CCGG	3 cut(s)	124, 144, 159
Hin1II	CATG	1 cut(s)	96
HpaII	CCGG	3 cut(s)	124, 144, 159
HphI	GGTGA	2 cut(s)	163, 207
Hpy188I	TCNGA	2 cut(s)	45, 228
HpyAV	CCTTC	2 cut(s)	61, 229
HpyCH4III	ACNGT	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	2 cut(s)	44, 195
Hsp92II	CATG	1 cut(s)	96
Kzo9I	GATC	1 cut(s)	88
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	4 cut(s)	115, 137, 157, 172
LweI	GCATC	1 cut(s)	193
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	3 cut(s)	68, 97, 212
MhlI	GDGCHC	1 cut(s)	166
MnlI	CCTC	7 cut(s)	72, 149, 176, 190, 200, 222, 231
MspI	CCGG	3 cut(s)	124, 144, 159
MspR9I	CCNGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	145
NcoI	CCATGG	1 cut(s)	92
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	1 cut(s)	96
NlaIV	GGNNCC	2 cut(s)	122, 163
NmeAIII	GCCGAG	1 cut(s)	165
PciSI	GCTCTTC	1 cut(s)	51
PkrI	GCNGC	1 cut(s)	8
PspN4I	GGNNCC	2 cut(s)	122, 163
SapI	GCTCTTC	1 cut(s)	51
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	1 cut(s)	242
SfaNI	GCATC	1 cut(s)	193
SsiI	CCGC	1 cut(s)	7
StyD4I	CCNGG	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	87
TauI	GCSGC	1 cut(s)	9
TscAI	CASTG	1 cut(s)	199
TspRI	CASTG	1 cut(s)	199
XagI	CCTNNNNNAGG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.