RchiOBHm_Chr5g0063751

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004115
Physical Location & Seq
Forward (+)
69375090 .. 69377111
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33982

Sequence Viewer

Length: 336 bp
ATGGGCCTTTATGGGCTGCATCATCAAGCGGGCTTAACTACACACGAGCATGAAAGAGCCCAACCCAAAGGTTTCAAGTGGCTACAAATAGCAAATGAGCCACACAACCCACCCACAAACGCAAACACAGAACAGTCTGCGAGAGAGAAGAGCAAAGAGAAAGCAGAAATGAGGAAGTTCGATCCATGGCCGATTTTCTTCAAGCGAGAATGGAACCGGAACTGGCCTTTCCTGGCTGGGTTCGCCATAACCGGAGCCCTCATCACCAAGTTCTCTCTCGGCCTCACTGAGGAAGATGCCAAGAACTCACCCTTCGTTCAGAGGCACAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.92

Weight (kDa)

9.75

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 29
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 289
AgsI TTSAA 2 cut(s) 76, 202
AjnI CCWGG 1 cut(s) 231
AlwI GGATC 1 cut(s) 176
AoxI GGCC 4 cut(s) 4, 188, 224, 280
ApeKI GCWGC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 256, 300
BanII GRGCYC 2 cut(s) 61, 259
BauI CACGAG 1 cut(s) 44
BbvI GCAGC 1 cut(s) 3
BciT130I CCWGG 1 cut(s) 233
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 215, 256
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 2 cut(s) 28, 286
BsaJI CCNNGG 1 cut(s) 185
BsaWI WCCGGW 2 cut(s) 216, 251
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 227
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 289
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 3
BseYI CCCAGC 1 cut(s) 236
BshFI GGCC 4 cut(s) 6, 190, 226, 282
BsiSI CCGG 2 cut(s) 217, 252
BslI CCNNNNNNNGG 1 cut(s) 289
BsnI GGCC 4 cut(s) 6, 190, 226, 282
Bsp1286I GDGCHC 2 cut(s) 61, 259
Bsp143I GATC 1 cut(s) 181
Bsp19I CCATGG 1 cut(s) 185
BspACI CCGC 1 cut(s) 29
BspANI GGCC 4 cut(s) 6, 190, 226, 282
BspCNI CTCAG 1 cut(s) 280
BspLI GGNNCC 2 cut(s) 215, 256
BspPI GGATC 1 cut(s) 176
BspQI GCTCTTC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 1 cut(s) 181
BssSI CACGAG 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 185
Bst2BI CACGAG 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 135
Bst6I CTCTTC 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 288
BstDSI CCRYGG 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 287
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 3
BsuRI GGCC 4 cut(s) 6, 190, 226, 282
BtgI CCRYGG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 2 cut(s) 50, 186
DdeI CTNAG 1 cut(s) 288
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 188
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 185
Eco24I GRGCYC 2 cut(s) 61, 259
EcoNI CCTNNNNNAGG 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 185
EcoT38I GRGCYC 2 cut(s) 61, 259
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 2 cut(s) 53, 189
FaiI YATR 4 cut(s) 12, 51, 187, 248
FatI CATG 2 cut(s) 49, 185
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 17
FriOI GRGCYC 2 cut(s) 61, 259
Fsp4HI GCNGC 1 cut(s) 17
GluI GCNGC 1 cut(s) 17
GsaI CCCAGC 1 cut(s) 240
HaeIII GGCC 4 cut(s) 6, 190, 226, 282
HapII CCGG 2 cut(s) 217, 252
Hin1II CATG 2 cut(s) 53, 189
HpaII CCGG 2 cut(s) 217, 252
HphI GGTGA 2 cut(s) 256, 300
Hpy188I TCNGA 1 cut(s) 321
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 288
Hsp92II CATG 2 cut(s) 53, 189
Kzo9I GATC 1 cut(s) 181
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 6 cut(s) 208, 218, 222, 230, 245, 265
Lsp1109I GCAGC 1 cut(s) 3
LweI GCATC 2 cut(s) 28, 286
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 3 cut(s) 160, 190, 305
MhlI GDGCHC 2 cut(s) 61, 259
MnlI CCTC 6 cut(s) 165, 269, 283, 293, 315, 324
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 48
MspI CCGG 2 cut(s) 217, 252
MspR9I CCNGG 1 cut(s) 233
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 242
NcoI CCATGG 1 cut(s) 185
NdeII GATC 1 cut(s) 181
NlaIII CATG 2 cut(s) 53, 189
NlaIV GGNNCC 2 cut(s) 215, 256
NmeAIII GCCGAG 1 cut(s) 258
PciSI GCTCTTC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 231
PspFI CCCAGC 1 cut(s) 236
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 215, 256
PspPI GGNCC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 48
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 1 cut(s) 17
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 2 cut(s) 61, 259
SetI ASST 2 cut(s) 73, 335
SfaNI GCATC 2 cut(s) 28, 286
SmiMI CAYNNNNRTG 1 cut(s) 48
SsiI CCGC 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 180
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 1 cut(s) 292
TseI GCWGC 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 66
TspRI CASTG 1 cut(s) 292
XagI CCTNNNNNAGG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.