Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0004115

Physical Location & Seq

Genomic Coordinates Forward (+)

10634036 .. 10637608

Gene Structure 3573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG123100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCCCAAAACCTAGCCTCCCCCGCTAGTGGCTATGTTGTCCACCAATGCTGGGTTAGATCTCTCCTGTTCGATACCAACCAGAAGGCCAATCTCGACCCCTCCGACGCCATAACTGCGGCAAGGTTCTCTGAAAGGAAGAAGAAGAAGTCATTGAAGATGAGAAAGTTCAATGCTTGGCTTGTGTTCTTCATGCGCGAGTGGAATTGGAATTGGCCTTTCCTCGTCGGCTTCGCTATCACCGGGATTCTCATCACCAAGTTCTCTCTCTGTCTCACTGGGGTTCTAATTTTGCAAAGGAGGATGCGAAGAACTCGCCTTTTGTACAGAGGCACAAGAACTCTGGTGCAGGAAGTGGTGGTCAAGTTGCCAAAGATGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.88

Weight (kDa)

11.22

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46430 AT5G59613 AT5G59613
fragaria_vesca	FvH4_3g35530
malus_domestica	MD01G1124900.v1.1 MD03G1096900.v1.1 MD11G1143400.v1.1
prunus_persica	Prupe.2G232300_v2.0.a1 Prupe.6G081200_v2.0.a1
pyrus_communis	pycom01g15120
rosa_chinensis	RchiOBHm_Chr1g0340881 RchiOBHm_Chr1g0360701 RchiOBHm_Chr1g0367621 RchiOBHm_Chr2g0162431 RchiOBHm_Chr3g0463581 RchiOBHm_Chr5g0063751 RchiOBHm_Chr6g0265721 RchiOBHm_Chr7g0198591 RchiOBHm_Chr7g0223231
rosa_laevigata	RLG00000035665
rosa_multiflora	Rmu_sc0005638.1_g000001 Rmu_ssc0000309.1_g000040
rosa_roxburghii	Rroxscaffold_1G00017110 Rroxscaffold_4G00320260
rosa_rugosa	Rorug01G0461200 Rorug05G0359100
rosa_samantha	Rh3AG123100
rosa_wichuraiana	Rw2G027430 Rw4G009610 Rw5G037380 Rw5G039260 Rw6G010810 Rw6G019310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	198
AciI	CCGC	2 cut(s)	24, 119
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	29, 52
AgsI	TTSAA	2 cut(s)	157, 172
Alw26I	GTCTC	1 cut(s)	278
AoxI	GGCC	3 cut(s)	3, 87, 215
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	232, 247
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	3 cut(s)	14, 27, 382
BglII	AGATCT	1 cut(s)	59
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	244
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	2 cut(s)	294, 366
BmuI	ACTGGG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	244
BsaBI	GATNNNNATC	1 cut(s)	251
BsaHI	GRCGYC	1 cut(s)	108
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 52
Bse1I	ACTGG	1 cut(s)	283
Bse8I	GATNNNNATC	1 cut(s)	251
BseGI	GGATG	1 cut(s)	309
BseJI	GATNNNNATC	1 cut(s)	251
BseLI	CCNNNNNNNGG	2 cut(s)	29, 52
BseNI	ACTGG	1 cut(s)	283
BseYI	CCCAGC	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	3 cut(s)	5, 89, 217
BsiSI	CCGG	1 cut(s)	243
BslI	CCNNNNNNNGG	2 cut(s)	29, 52
BsmAI	GTCTC	1 cut(s)	278
BsnI	GGCC	3 cut(s)	5, 89, 217
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	59
BspACI	CCGC	2 cut(s)	24, 119
BspANI	GGCC	3 cut(s)	5, 89, 217
BspFNI	CGCG	1 cut(s)	198
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	283
BssMI	GATC	1 cut(s)	59
BssNI	GRCGYC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	108
BstAUI	TGTACA	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	309
BstFNI	CGCG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	1 cut(s)	62
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	59
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 116, 376
BstSCI	CCNGG	1 cut(s)	242
BstUI	CGCG	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	59
BsuRI	GGCC	3 cut(s)	5, 89, 217
BtsCI	GGATG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	276
CfoI	GCGC	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	7 cut(s)	5, 17, 33, 89, 181, 217, 231
CviKI_1	RGCY	7 cut(s)	5, 17, 33, 89, 181, 217, 231
CviQI	GTAC	1 cut(s)	325
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
FaeI	CATG	1 cut(s)	196
FaiI	YATR	3 cut(s)	36, 113, 194
FatI	CATG	1 cut(s)	192
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	3 cut(s)	14, 27, 382
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	120
GsaI	CCCAGC	1 cut(s)	55
HaeIII	GGCC	3 cut(s)	5, 89, 217
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	2 cut(s)	232, 247
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	106, 133
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	2 cut(s)	110, 230
HpyAV	CCTTC	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	295, 349
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 116, 376
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	59
LpnPI	CCDG	7 cut(s)	37, 80, 95, 256, 264, 329, 335
LweI	GCATC	2 cut(s)	294, 366
MaeI	CTAG	3 cut(s)	14, 27, 382
MalI	GATC	1 cut(s)	61
MboI	GATC	1 cut(s)	59
MboII	GAAGA	6 cut(s)	151, 154, 157, 169, 181, 321
MflI	RGATCY	1 cut(s)	59
MluCI	AATT	3 cut(s)	205, 211, 288
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	5 cut(s)	28, 112, 233, 294, 323
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	244
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	3 cut(s)	23, 116, 376
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	1 cut(s)	59
NlaIII	CATG	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	59
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	59
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	244
SetI	ASST	2 cut(s)	15, 128
SfaNI	GCATC	2 cut(s)	294, 366
Sse9I	AATT	3 cut(s)	205, 211, 288
SsiI	CCGC	2 cut(s)	24, 119
SspMI	CTAG	3 cut(s)	14, 27, 382
StyD4I	CCNGG	1 cut(s)	242
TaqI	TCGA	2 cut(s)	72, 96
TasI	AATT	3 cut(s)	205, 211, 288
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	247
TscAI	CASTG	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	181
TspRI	CASTG	1 cut(s)	283
XspI	CTAG	3 cut(s)	14, 27, 382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.