Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004115

Physical Location & Seq

Genomic Coordinates Reverse (-)

13351752 .. 13353581

Gene Structure 1830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1143400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAGGAAGTTCGATCCATGGCCGATTTTCTTCAAGCGAGAATGGAACCGGAACTGGCCGTTCCTCGTCGGGTTCGCCATCACCGGAACCCTGATCACCAAGTTCTCTATCGGCCTCACTGGAAGATGCCAAGAACTCGCCTTTCGTTCAGAGGCACAAGAGGTGATTTATGTTTGGTGTATTAGCCGCCTTTGTGCTAGCATTGTGGAGAAGACGGCCCTCGTGCTATTCTCAAGGACCATAATAACAAAAGAGAGATGTTCTAGATACTCTTTTTTGAATTTTCTGTTATGTTTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.78

Weight (kDa)

9.6

Isoelectric Point (pI)

22.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46430 AT5G59613 AT5G59613
fragaria_vesca	FvH4_3g35530
malus_domestica	MD01G1124900.v1.1 MD03G1096900.v1.1 MD11G1143400.v1.1
prunus_persica	Prupe.2G232300_v2.0.a1 Prupe.6G081200_v2.0.a1
pyrus_communis	pycom01g15120
rosa_chinensis	RchiOBHm_Chr1g0340881 RchiOBHm_Chr1g0360701 RchiOBHm_Chr1g0367621 RchiOBHm_Chr2g0162431 RchiOBHm_Chr3g0463581 RchiOBHm_Chr5g0063751 RchiOBHm_Chr6g0265721 RchiOBHm_Chr7g0198591 RchiOBHm_Chr7g0223231
rosa_laevigata	RLG00000035665
rosa_multiflora	Rmu_sc0005638.1_g000001 Rmu_ssc0000309.1_g000040
rosa_roxburghii	Rroxscaffold_1G00017110 Rroxscaffold_4G00320260
rosa_rugosa	Rorug01G0461200 Rorug05G0359100
rosa_samantha	Rh3AG123100
rosa_wichuraiana	Rw2G027430 Rw4G009610 Rw5G037380 Rw5G039260 Rw6G010810 Rw6G019310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	1 cut(s)	8
AcoI	YGGCCR	2 cut(s)	20, 56
AcsI	RAATTY	1 cut(s)	280
AgsI	TTSAA	2 cut(s)	34, 280
AlwI	GGATC	1 cut(s)	8
AoxI	GGCC	4 cut(s)	20, 56, 112, 216
ApoI	RAATTY	1 cut(s)	280
AspS9I	GGNCC	2 cut(s)	217, 237
AsuHPI	GGTGA	3 cut(s)	73, 88, 175
AsuNHI	GCTAGC	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	237
BauI	CACGAG	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	218
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	2 cut(s)	43, 231
BclI	TGATCA	1 cut(s)	93
BfaI	CTAG	2 cut(s)	198, 264
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	237
BmgT120I	GGNCC	2 cut(s)	217, 237
BmiI	GGNNCC	2 cut(s)	47, 88
BmsI	GCATC	1 cut(s)	116
BmtI	GCTAGC	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	17
BsaWI	WCCGGW	2 cut(s)	48, 83
Bse1I	ACTGG	2 cut(s)	59, 124
BseDI	CCNNGG	1 cut(s)	17
BseNI	ACTGG	2 cut(s)	59, 124
BshFI	GGCC	4 cut(s)	22, 58, 114, 218
BsiSI	CCGG	2 cut(s)	49, 84
BsnI	GGCC	4 cut(s)	22, 58, 114, 218
Bsp143I	GATC	2 cut(s)	13, 93
Bsp19I	CCATGG	1 cut(s)	17
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	4 cut(s)	22, 58, 114, 218
BspLI	GGNNCC	2 cut(s)	47, 88
BspOI	GCTAGC	1 cut(s)	201
BspPI	GGATC	1 cut(s)	8
BsrI	ACTGG	2 cut(s)	59, 124
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	2 cut(s)	13, 93
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	17
Bst2BI	CACGAG	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	199
BstDSI	CCRYGG	1 cut(s)	17
BstKTI	GATC	2 cut(s)	16, 96
BstMBI	GATC	2 cut(s)	13, 93
BstV2I	GAAGAC	1 cut(s)	218
BsuRI	GGCC	4 cut(s)	22, 58, 114, 218
BtgI	CCRYGG	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	199
Cfr13I	GGNCC	2 cut(s)	217, 237
CviAII	CATG	1 cut(s)	18
CviJI	RGCY	5 cut(s)	22, 58, 114, 186, 218
CviKI_1	RGCY	5 cut(s)	22, 58, 114, 186, 218
DpnI	GATC	2 cut(s)	15, 95
DpnII	GATC	2 cut(s)	13, 93
EaeI	YGGCCR	2 cut(s)	20, 56
Eco130I	CCWWGG	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	17
FaeI	CATG	1 cut(s)	21
FaiI	YATR	4 cut(s)	19, 171, 242, 292
FatI	CATG	1 cut(s)	17
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	187
FspBI	CTAG	2 cut(s)	198, 264
GluI	GCNGC	1 cut(s)	187
HaeIII	GGCC	4 cut(s)	22, 58, 114, 218
HapII	CCGG	2 cut(s)	49, 84
Hin1II	CATG	1 cut(s)	21
HpaII	CCGG	2 cut(s)	49, 84
HphI	GGTGA	3 cut(s)	73, 88, 175
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	1 cut(s)	264
Hpy99I	CGWCG	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	21
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	13, 93
LpnPI	CCDG	5 cut(s)	40, 62, 97, 104, 105
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	2 cut(s)	198, 264
MalI	GATC	2 cut(s)	15, 95
MboI	GATC	2 cut(s)	13, 93
MboII	GAAGA	3 cut(s)	22, 135, 223
MluCI	AATT	1 cut(s)	280
MnlI	CCTC	5 cut(s)	74, 125, 145, 154, 230
MspI	CCGG	2 cut(s)	49, 84
NcoI	CCATGG	1 cut(s)	17
NdeII	GATC	2 cut(s)	13, 93
NheI	GCTAGC	1 cut(s)	197
NlaIII	CATG	1 cut(s)	21
NlaIV	GGNNCC	2 cut(s)	47, 88
PkrI	GCNGC	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	47, 88
PspPI	GGNCC	2 cut(s)	217, 237
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	2 cut(s)	13, 93
Sau96I	GGNCC	2 cut(s)	217, 237
SetI	ASST	1 cut(s)	165
SfaNI	GCATC	1 cut(s)	116
SinI	GGWCC	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	2 cut(s)	198, 264
StyI	CCWWGG	1 cut(s)	17
TaqI	TCGA	1 cut(s)	12
TasI	AATT	1 cut(s)	280
TauI	GCSGC	1 cut(s)	189
TscAI	CASTG	1 cut(s)	124
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	237
XapI	RAATTY	1 cut(s)	280
XbaI	TCTAGA	1 cut(s)	263
XspI	CTAG	2 cut(s)	198, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.