Rroxscaffold_1G00017110

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
21293902 .. 21295687
1786 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00017110.1

Sequence Viewer

Length: 168 bp
ATGAGGAAGTTCGATCCATGGCCGATTTTCTTCAAGCGAGAATGGAACCGGAACTGGCCTTTCCTTGCTGGGTTCGCCATAACCGGAGCCCTCATCACCAAGTTCTCTCTCGGCCTCACTGAGGAAGATGCCAAGAACTCACCCTTCGTTCAGAGGCACAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

55

Amino Acids

6.6

Weight (kDa)

10.52

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 8
AcoI YGGCCR 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 1 cut(s) 34
AlwI GGATC 1 cut(s) 8
AoxI GGCC 3 cut(s) 20, 56, 112
AsuHPI GGTGA 2 cut(s) 88, 132
BanII GRGCYC 1 cut(s) 91
BmiI GGNNCC 2 cut(s) 47, 88
BmsI GCATC 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 17
BsaWI WCCGGW 2 cut(s) 48, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 17
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 59
BseYI CCCAGC 1 cut(s) 68
BshFI GGCC 3 cut(s) 22, 58, 114
BsiSI CCGG 2 cut(s) 49, 84
BslI CCNNNNNNNGG 1 cut(s) 121
BsnI GGCC 3 cut(s) 22, 58, 114
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 13
Bsp19I CCATGG 1 cut(s) 17
BspANI GGCC 3 cut(s) 22, 58, 114
BspCNI CTCAG 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 47, 88
BspPI GGATC 1 cut(s) 8
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 17
BstDEI CTNAG 1 cut(s) 120
BstDSI CCRYGG 1 cut(s) 17
BstENI CCTNNNNNAGG 1 cut(s) 119
BstKTI GATC 1 cut(s) 16
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 74
BsuRI GGCC 3 cut(s) 22, 58, 114
BtgI CCRYGG 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 117
CviAII CATG 1 cut(s) 18
CviJI RGCY 4 cut(s) 22, 58, 89, 114
CviKI_1 RGCY 4 cut(s) 22, 58, 89, 114
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 1 cut(s) 21
FaiI YATR 2 cut(s) 19, 80
FatI CATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 91
GsaI CCCAGC 1 cut(s) 72
HaeIII GGCC 3 cut(s) 22, 58, 114
HapII CCGG 2 cut(s) 49, 84
Hin1II CATG 1 cut(s) 21
HpaII CCGG 2 cut(s) 49, 84
HphI GGTGA 2 cut(s) 88, 132
Hpy188I TCNGA 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 1 cut(s) 21
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 4 cut(s) 40, 54, 62, 97
LweI GCATC 1 cut(s) 118
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 2 cut(s) 22, 137
MhlI GDGCHC 1 cut(s) 91
MnlI CCTC 5 cut(s) 101, 115, 125, 147, 156
MspI CCGG 2 cut(s) 49, 84
MwoI GCNNNNNNNGC 1 cut(s) 74
NcoI CCATGG 1 cut(s) 17
NdeII GATC 1 cut(s) 13
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 2 cut(s) 47, 88
NmeAIII GCCGAG 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 47, 88
Sau3AI GATC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 91
SetI ASST 1 cut(s) 167
SfaNI GCATC 1 cut(s) 118
StyI CCWWGG 1 cut(s) 17
TaqI TCGA 1 cut(s) 12
TscAI CASTG 1 cut(s) 124
TspRI CASTG 1 cut(s) 124
XagI CCTNNNNNAGG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.