RLG00000035665

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004115
Physical Location & Seq
Forward (+)
69964177 .. 69964949
773 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035665

Sequence Viewer

Length: 336 bp
ATGAGGAGGTTCGATCCATGGCCGATTTTCTTCAAGCGAGAATGGAACCGGAACTGGCCTTTCCTCGCTGGGTTCGCCATAACCGGAGCCCTCATCACCAAGTTCTCTCTTGGCCTTACTGAGGAAGATGCCAAGAACTCACCCTTCGTTCAGAGGCACAAGAGGTACCTTTTGATTCTTATCTCAGAACTCAAACATACACTTGTTGTTATTCGATTGCAATATAATGATTCTCTGGATGGAGTTGAGATTTTGAATCGCAACCTGCCCCTAAATGGGTTGTCTTTAATCTTAGATCTCGACTGGTCATTTACATCATCTCTTTTAAGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.95

Weight (kDa)

9.22

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 273
Acc65I GGTACC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 165
AclWI GGATC 1 cut(s) 8
AcoI YGGCCR 1 cut(s) 20
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 3 cut(s) 121, 275, 276
AgsI TTSAA 2 cut(s) 34, 256
AlwI GGATC 1 cut(s) 8
AoxI GGCC 3 cut(s) 20, 56, 112
Asp718I GGTACC 1 cut(s) 165
AsuHPI GGTGA 2 cut(s) 88, 132
BanI GGYRCC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 91
BccI CCATC 1 cut(s) 233
BfuAI ACCTGC 1 cut(s) 273
BglII AGATCT 1 cut(s) 295
BmiI GGNNCC 3 cut(s) 47, 88, 167
BmsI GCATC 1 cut(s) 118
BsaBI GATNNNNATC 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 17
BsaWI WCCGGW 2 cut(s) 48, 83
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 275, 276
Bse1I ACTGG 2 cut(s) 59, 308
Bse8I GATNNNNATC 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 1 cut(s) 244
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 3 cut(s) 121, 275, 276
BseMII CTCAG 2 cut(s) 111, 198
BseNI ACTGG 2 cut(s) 59, 308
BseRI GAGGAG 1 cut(s) 19
BseYI CCCAGC 1 cut(s) 68
BshFI GGCC 3 cut(s) 22, 58, 114
BshNI GGYRCC 1 cut(s) 165
BsiSI CCGG 2 cut(s) 49, 84
BslI CCNNNNNNNGG 3 cut(s) 121, 275, 276
BsnI GGCC 3 cut(s) 22, 58, 114
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 2 cut(s) 13, 295
Bsp19I CCATGG 1 cut(s) 17
BspANI GGCC 3 cut(s) 22, 58, 114
BspCNI CTCAG 2 cut(s) 112, 197
BspLI GGNNCC 3 cut(s) 47, 88, 167
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 165
BsrI ACTGG 2 cut(s) 59, 308
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 2 cut(s) 13, 295
BssT1I CCWWGG 1 cut(s) 17
BstDEI CTNAG 3 cut(s) 120, 184, 292
BstDSI CCRYGG 1 cut(s) 17
BstENI CCTNNNNNAGG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 2 cut(s) 16, 298
BstMBI GATC 2 cut(s) 13, 295
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 3 cut(s) 22, 58, 114
BtgI CCRYGG 1 cut(s) 17
BtsCI GGATG 1 cut(s) 244
BveI ACCTGC 1 cut(s) 273
Csp6I GTAC 1 cut(s) 166
CviAII CATG 1 cut(s) 18
CviJI RGCY 4 cut(s) 22, 58, 89, 114
CviKI_1 RGCY 4 cut(s) 22, 58, 89, 114
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 3 cut(s) 120, 184, 292
DpnI GATC 2 cut(s) 15, 297
DpnII GATC 2 cut(s) 13, 295
EaeI YGGCCR 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 1 cut(s) 21
FaiI YATR 4 cut(s) 19, 80, 198, 225
FatI CATG 1 cut(s) 17
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 91
GsaI CCCAGC 1 cut(s) 72
HaeIII GGCC 3 cut(s) 22, 58, 114
HapII CCGG 2 cut(s) 49, 84
Hin1II CATG 1 cut(s) 21
HinfI GANTC 3 cut(s) 175, 230, 256
HpaII CCGG 2 cut(s) 49, 84
HphI GGTGA 2 cut(s) 88, 132
Hpy188I TCNGA 2 cut(s) 153, 187
Hpy188III TCNNGA 3 cut(s) 236, 299, 333
HpyAV CCTTC 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 3 cut(s) 120, 184, 292
Hsp92II CATG 1 cut(s) 21
KpnI GGTACC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 13, 295
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 7 cut(s) 40, 54, 62, 97, 221, 278, 289
LweI GCATC 1 cut(s) 118
MalI GATC 2 cut(s) 15, 297
MboI GATC 2 cut(s) 13, 295
MboII GAAGA 2 cut(s) 22, 137
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 1 cut(s) 91
MnlI CCTC 5 cut(s) 74, 101, 115, 147, 156
MseI TTAA 2 cut(s) 287, 326
MspI CCGG 2 cut(s) 49, 84
MwoI GCNNNNNNNGC 1 cut(s) 74
NcoI CCATGG 1 cut(s) 17
NdeII GATC 2 cut(s) 13, 295
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 3 cut(s) 47, 88, 167
PfeI GAWTC 3 cut(s) 175, 230, 256
PspFI CCCAGC 1 cut(s) 68
PspN4I GGNNCC 3 cut(s) 47, 88, 167
PsuI RGATCY 1 cut(s) 295
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SaqAI TTAA 2 cut(s) 287, 326
Sau3AI GATC 2 cut(s) 13, 295
SduI GDGCHC 1 cut(s) 91
SetI ASST 4 cut(s) 11, 167, 171, 267
SfaNI GCATC 1 cut(s) 118
StyI CCWWGG 1 cut(s) 17
TaqI TCGA 3 cut(s) 12, 214, 300
TfiI GAWTC 3 cut(s) 175, 230, 256
Tru1I TTAA 2 cut(s) 287, 326
Tru9I TTAA 2 cut(s) 287, 326
XagI CCTNNNNNAGG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.