Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004115

Physical Location & Seq

Genomic Coordinates Forward (+)

23766052 .. 23768218

Gene Structure 2167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1124900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGCGAAAGTTCGATCCATGGCCGGTGTTTTTCAAGCGCGAGTGGAGACGGAACTGGCCGTTCCTGGTCGGTTTCGCCATCACCGGCACGCTCATCACCAAGTTCTCTCTGGGTCTCACCGAGGAGGACGCGAAGAATTCTCCGTTCGTGCAGAGGCATAAGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

57

Amino Acids

6.78

Weight (kDa)

10.67

Isoelectric Point (pI)

55.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46430 AT5G59613 AT5G59613
fragaria_vesca	FvH4_3g35530
malus_domestica	MD01G1124900.v1.1 MD03G1096900.v1.1 MD11G1143400.v1.1
prunus_persica	Prupe.2G232300_v2.0.a1 Prupe.6G081200_v2.0.a1
pyrus_communis	pycom01g15120
rosa_chinensis	RchiOBHm_Chr1g0340881 RchiOBHm_Chr1g0360701 RchiOBHm_Chr1g0367621 RchiOBHm_Chr2g0162431 RchiOBHm_Chr3g0463581 RchiOBHm_Chr5g0063751 RchiOBHm_Chr6g0265721 RchiOBHm_Chr7g0198591 RchiOBHm_Chr7g0223231
rosa_laevigata	RLG00000035665
rosa_multiflora	Rmu_sc0005638.1_g000001 Rmu_ssc0000309.1_g000040
rosa_roxburghii	Rroxscaffold_1G00017110 Rroxscaffold_4G00320260
rosa_rugosa	Rorug01G0461200 Rorug05G0359100
rosa_samantha	Rh3AG123100
rosa_wichuraiana	Rw2G027430 Rw4G009610 Rw5G037380 Rw5G039260 Rw6G010810 Rw6G019310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	39, 131
AclWI	GGATC	1 cut(s)	8
AcoI	YGGCCR	2 cut(s)	20, 56
AcsI	RAATTY	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	63
Alw26I	GTCTC	2 cut(s)	40, 119
AlwI	GGATC	1 cut(s)	8
AoxI	GGCC	2 cut(s)	20, 56
ApoI	RAATTY	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	39
AsuHPI	GGTGA	3 cut(s)	73, 88, 109
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	65
BcoDI	GTCTC	2 cut(s)	40, 119
Bme1390I	CCNGG	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	17, 120
Bse118I	RCCGGY	2 cut(s)	22, 83
Bse1I	ACTGG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	17, 120
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	137
BsgI	GTGCAG	1 cut(s)	170
Bsh1236I	CGCG	2 cut(s)	39, 131
BshFI	GGCC	2 cut(s)	22, 58
BsiSI	CCGG	2 cut(s)	23, 84
BsmAI	GTCTC	2 cut(s)	40, 119
BsmBI	CGTCTC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	22, 58
Bso31I	GGTCTC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	13
Bsp19I	CCATGG	1 cut(s)	17
BspANI	GGCC	2 cut(s)	22, 58
BspFNI	CGCG	2 cut(s)	39, 131
BspPI	GGATC	1 cut(s)	8
BspTNI	GGTCTC	1 cut(s)	119
BsrFI	RCCGGY	2 cut(s)	22, 83
BsrI	ACTGG	1 cut(s)	59
BssAI	RCCGGY	2 cut(s)	22, 83
BssECI	CCNNGG	2 cut(s)	17, 120
BssMI	GATC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	17
BstFNI	CGCG	2 cut(s)	39, 131
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	2 cut(s)	40, 119
BstMBI	GATC	1 cut(s)	13
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstUI	CGCG	2 cut(s)	39, 131
BsuRI	GGCC	2 cut(s)	22, 58
BtgI	CCRYGG	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	89
CfoI	GCGC	1 cut(s)	39
Cfr10I	RCCGGY	2 cut(s)	22, 83
CseI	GACGC	1 cut(s)	137
CviAII	CATG	1 cut(s)	18
CviJI	RGCY	2 cut(s)	22, 58
CviKI_1	RGCY	2 cut(s)	22, 58
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
EaeI	YGGCCR	2 cut(s)	20, 56
Eco130I	CCWWGG	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	17
Esp3I	CGTCTC	1 cut(s)	40
FaeI	CATG	1 cut(s)	21
FaiI	YATR	2 cut(s)	19, 159
FatI	CATG	1 cut(s)	17
GlaI	GCGC	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	22, 58
HapII	CCGG	2 cut(s)	23, 84
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	21
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HpaII	CCGG	2 cut(s)	23, 84
HphI	GGTGA	3 cut(s)	73, 88, 109
HpyCH4V	TGCA	1 cut(s)	151
Hsp92II	CATG	1 cut(s)	21
HspAI	GCGC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	13
LpnPI	CCDG	6 cut(s)	36, 40, 50, 77, 95, 97
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	1 cut(s)	145
MluCI	AATT	1 cut(s)	136
MnlI	CCTC	3 cut(s)	115, 118, 147
MspI	CCGG	2 cut(s)	23, 84
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	2 cut(s)	39, 131
NcoI	CCATGG	1 cut(s)	17
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	17
TaqI	TCGA	1 cut(s)	12
TasI	AATT	1 cut(s)	136
TspGWI	ACGGA	2 cut(s)	64, 132
XapI	RAATTY	1 cut(s)	136
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.