Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006925

Physical Location & Seq

Genomic Coordinates Forward (+)

31115239 .. 31118969

Gene Structure 3731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g36300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1674 bp

ATGACCACAGTGAAGCTCAGAGGAAAGAACTTATGGAAAGCCTTGAAAAGAGTGAAGCTCATATTGAAAGAGCTTCAGGAAAAGATTGTGCGTAGGGATGATAATCTGAATGCCCTTCTGAAAAAGCTGGAGCATATTAAGGCTCAAAACAAGGAGCATGAAGAAACCGAAAAAGCTCTAAAGGAAGATCTTGATAAAAAATTGCTTCAGCAGAGTGAGACTCAAAATAAGAAATTGCAACTTATGTTCAGCTTGGATGATAATAAGGCTATTAAAGAGCTGTTCGAGGAAAAGGAAAAGAATGAGAAGCTTGATGGAGAATTACAGGAATTGTGTAACCATCGTAATCTCCTACTTGAACTATTGGATGTCTTTCGGAATAAGTTACGGAGCAAGGAAGAAGAGCTGATCAATAAGAAAGATCTTCAGGATAAGGGTGACCAGAGTGAAGCTGAACTTCAGGAGTCTCGTCAAGAGTTCATCAATGGACTAGGGGGATTAAATTTCTGTACATCAATTGGGGTGAAGAGAATGGGAGAGCTTGACAAGAAACCATTTCAAACTTCATGCAAGAGACAATATTCTATAAAAGAAGCAGATAACAAGGCAGCAACACTTTATTCTCAGTGGAATGGCTACCTGAGGGATCCAAATTGGTATCCATTCACAACTAGCATGGATTCTTGTGGAAATTCTAAGGTGACTCTCAATGAAGAAGATGAAAAATTAAAACAGTTAAAGATCAGCAGTCTTGATGGTGAAATATACAAGGCTGTGACAACTGCCTTGGTGGAATTGAATACCTATAATACCAATGGTAGGAGTAGGACTGCTATAGCAGAATTATGGAATTTTAAACAAGGGAGGAAGGCATCATTGAAAGAGGGAATATCATATGTACTGAATCAATTGGAACTGCTGAGAAAGAGGGTTGGTAGAATGTTGTCAGAGAAAAAGCAGCTTGATGTGAAGAAGAGAAACCTGGATGACGGGATTAATGAAATTCAAAAGAAATTAGAGGAGAAGGACGCTGAGTTGAAAGATTTGAAAGCTGAGTTGGAATATTCACTAGAGCTCAACTCTACACTATCTGTCAAAGATCGTGAAAGTAATGATGAACTGCAGGGTGCTCACAAGGAGTTAATCAAAGAACTGGTGGATGACGGTTTTATTGGTGTAAAGAGAATGGGAGAGCTTGACATCACACCTTTTACAACTGCGTGCAAGAGAGAACATTCTATGCTTGAACCAGTGGTGTGGCAGGATTATCTTAGTGATCCAAACTGGCATCCATTTAAAGCAATCGAGGATGAATTTGGAAACCGAAAGGAAATTCTTGATGTAGAAGATGAAAAGTTAAAAGAGTATAAAGTGCGACGATGGAGTGTACAAGGCAGTTGTCACTGCCTTGATGGAATTGAACGAGTACAATCCGAGTGGTATGTATGTAACGGAAGAACTATGGAACTTTCAAAAAGGCAGGAGGGCAACCCTACAAGAGGGATTATCATACATACTATTGAACTGGAAACCTTTGAAAAGGAAAAGAAAAACTTGACTCATCAGTTAAAAGACAGTTGGGAGGCTCCTGGCAGCAACTTACCTCTTTCAGGTTCTAGTGCTTTTCAATTTGATATGTTGGCTGTTGGTCATGCTAGAGGTCTTTTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

558

Amino Acids

64.6

Weight (kDa)

6.32

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	176 - 309	2.4e-41	XH domain
XH	PF03469	394 - 457	2.2e-12	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006925)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36270 FvH4_3g36300
rosa_chinensis	RchiOBHm_Chr5g0065081 RchiOBHm_Chr5g0065111
rosa_laevigata	RLG00000035750 RLG00000035757
rosa_multiflora	Rmu_sc0002915.1_g000011 Rmu_sc0002915.1_g000016 Rmu_sc0006219.1_g000001 Rmu_sc0006219.1_g000008
rosa_roxburghii	Rroxscaffold_1G00016210 Rroxscaffold_1G00016240
rosa_rugosa	Rorug05G0367600 Rorug05G0367900 Rorug05G0368000
rosa_samantha	Rh5AG426200 Rh5AG426400 Rh5AG426500 Rh5BG441400 Rh5BG441700 Rh5CG464100 Rh5CG464300 Rh5DG453900 Rh5DG454200
rosa_wichuraiana	Rw5G040040 Rw5G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	641, 654, 1271
AcsI	RAATTY	6 cut(s)	502, 691, 850, 1002, 1313, 1332
AcuI	CTGAAG	4 cut(s)	59, 191, 410, 443
AfaI	GTAC	4 cut(s)	511, 900, 1389, 1428
AfiI	CCNNNNNNNGG	3 cut(s)	819, 1499, 1610
AjnI	CCWGG	2 cut(s)	981, 1588
AjuI	GAANNNNNNNTTGG	2 cut(s)	1040, 1072
Alw21I	GWGCWC	2 cut(s)	1077, 1132
Alw26I	GTCTC	3 cut(s)	212, 471, 568
AlwI	GGATC	3 cut(s)	641, 654, 1271
ApeKI	GCWGC	3 cut(s)	608, 958, 1593
ApoI	RAATTY	6 cut(s)	502, 691, 850, 1002, 1313, 1332
AseI	ATTAAT	1 cut(s)	996
AsuHPI	GGTGA	4 cut(s)	449, 535, 712, 770
AxyI	CCTNAGG	1 cut(s)	641
BamHI	GGATCC	1 cut(s)	646
BanII	GRGCYC	1 cut(s)	1077
Bbv12I	GWGCWC	2 cut(s)	1077, 1132
BbvI	GCAGC	3 cut(s)	620, 970, 1605
BccI	CCATC	5 cut(s)	308, 348, 749, 1374, 1406
BciT130I	CCWGG	2 cut(s)	983, 1590
BciVI	GTATCC	1 cut(s)	669
BclI	TGATCA	1 cut(s)	408
BcoDI	GTCTC	3 cut(s)	212, 471, 568
BfaI	CTAG	5 cut(s)	491, 672, 1070, 1617, 1656
BfmI	CTRYAG	2 cut(s)	834, 1121
BfuI	GTATCC	1 cut(s)	669
BglII	AGATCT	2 cut(s)	187, 421
BisI	GCNGC	3 cut(s)	609, 959, 1594
BlsI	GCNGC	3 cut(s)	610, 960, 1595
Bme1390I	CCNGG	2 cut(s)	983, 1590
BmiI	GGNNCC	2 cut(s)	648, 1587
BmrFI	CCNGG	2 cut(s)	983, 1590
BmsI	GCATC	2 cut(s)	881, 1297
BplI	GAGNNNNNCTC	6 cut(s)	42, 74, 205, 237, 1064, 1096
BpmI	CTGGAG	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	786
Bsc4I	CCNNNNNNNGG	3 cut(s)	819, 1499, 1610
Bse1I	ACTGG	4 cut(s)	1158, 1250, 1289, 1530
Bse21I	CCTNAGG	1 cut(s)	641
Bse8I	GATNNNNATC	1 cut(s)	102
BseBI	CCWGG	2 cut(s)	983, 1590
BseDI	CCNNGG	1 cut(s)	786
BseGI	GGATG	7 cut(s)	103, 262, 373, 991, 1165, 1288, 1315
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	3 cut(s)	819, 1499, 1610
BseMII	CTCAG	6 cut(s)	31, 632, 638, 911, 1023, 1044
BseNI	ACTGG	4 cut(s)	1158, 1250, 1289, 1530
BseRI	GAGGAG	1 cut(s)	1034
BseXI	GCAGC	3 cut(s)	620, 970, 1605
BsiHKAI	GWGCWC	2 cut(s)	1077, 1132
BslI	CCNNNNNNNGG	3 cut(s)	819, 1499, 1610
BsmAI	GTCTC	3 cut(s)	212, 471, 568
BsmI	GAATGC	1 cut(s)	115
Bsp1286I	GDGCHC	2 cut(s)	1077, 1132
Bsp1407I	TGTACA	2 cut(s)	509, 1387
Bsp143I	GATC	7 cut(s)	187, 408, 421, 646, 741, 1099, 1276
BspCNI	CTCAG	6 cut(s)	30, 633, 637, 912, 1024, 1045
BspLI	GGNNCC	2 cut(s)	648, 1587
BspMAI	CTGCAG	1 cut(s)	1125
BspPI	GGATC	3 cut(s)	641, 654, 1271
BspQI	GCTCTTC	1 cut(s)	396
BsrGI	TGTACA	2 cut(s)	509, 1387
BsrI	ACTGG	4 cut(s)	1158, 1250, 1289, 1530
BssECI	CCNNGG	1 cut(s)	786
BssMI	GATC	7 cut(s)	187, 408, 421, 646, 741, 1099, 1276
BssT1I	CCWWGG	1 cut(s)	786
Bst2UI	CCWGG	2 cut(s)	983, 1590
Bst4CI	ACNGT	4 cut(s)	10, 735, 1166, 1577
Bst6I	CTCTTC	3 cut(s)	396, 521, 968
BstAUI	TGTACA	2 cut(s)	509, 1387
BstC8I	GCNNGC	1 cut(s)	1222
BstDEI	CTNAG	8 cut(s)	17, 624, 641, 696, 920, 1032, 1053, 1271
BstEII	GGTNACC	1 cut(s)	437
BstENI	CCTNNNNNAGG	2 cut(s)	1497, 1608
BstF5I	GGATG	7 cut(s)	103, 262, 373, 991, 1165, 1288, 1315
BstKTI	GATC	7 cut(s)	190, 411, 424, 649, 744, 1102, 1279
BstMAI	GTCTC	3 cut(s)	212, 471, 568
BstMBI	GATC	7 cut(s)	187, 408, 421, 646, 741, 1099, 1276
BstNI	CCWGG	2 cut(s)	983, 1590
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	981, 1588
BstSFI	CTRYAG	2 cut(s)	834, 1121
BstV1I	GCAGC	3 cut(s)	620, 970, 1605
BstX2I	RGATCY	3 cut(s)	187, 421, 646
BstXI	CCANNNNNNTGG	1 cut(s)	1257
BstYI	RGATCY	3 cut(s)	187, 421, 646
Bsu36I	CCTNAGG	1 cut(s)	641
BsuI	GTATCC	1 cut(s)	669
BtsCI	GGATG	7 cut(s)	103, 262, 373, 991, 1165, 1288, 1315
BtsI	GCAGTG	1 cut(s)	1402
BtsIMutI	CAGTG	4 cut(s)	15, 632, 1257, 1402
Cac8I	GCNNGC	1 cut(s)	1222
CseI	GACGC	1 cut(s)	1037
Csp6I	GTAC	4 cut(s)	510, 899, 1388, 1427
CspCI	CAANNNNNGTGG	2 cut(s)	1418, 1453
CviAII	CATG	4 cut(s)	158, 567, 676, 1652
CviQI	GTAC	4 cut(s)	510, 899, 1388, 1427
DdeI	CTNAG	8 cut(s)	17, 624, 641, 696, 920, 1032, 1053, 1271
DpnI	GATC	7 cut(s)	189, 410, 423, 648, 743, 1101, 1278
DpnII	GATC	7 cut(s)	187, 408, 421, 646, 741, 1099, 1276
DraI	TTTAAA	2 cut(s)	856, 1297
Eam1104I	CTCTTC	3 cut(s)	396, 521, 968
EarI	CTCTTC	3 cut(s)	396, 521, 968
Ecl136II	GAGCTC	1 cut(s)	1075
Eco130I	CCWWGG	1 cut(s)	786
Eco24I	GRGCYC	1 cut(s)	1077
Eco53kI	GAGCTC	1 cut(s)	1075
Eco57I	CTGAAG	4 cut(s)	59, 191, 410, 443
Eco81I	CCTNAGG	1 cut(s)	641
Eco91I	GGTNACC	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	1075
EcoNI	CCTNNNNNAGG	2 cut(s)	1497, 1608
EcoO65I	GGTNACC	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	981, 1588
EcoT14I	CCWWGG	1 cut(s)	786
EcoT38I	GRGCYC	1 cut(s)	1077
ErhI	CCWWGG	1 cut(s)	786
FaeI	CATG	4 cut(s)	161, 570, 679, 1655
FalI	AAGNNNNNCTT	4 cut(s)	441, 473, 1538, 1570
FatI	CATG	4 cut(s)	157, 566, 675, 1651
FauNDI	CATATG	1 cut(s)	895
FbaI	TGATCA	1 cut(s)	408
Fnu4HI	GCNGC	3 cut(s)	609, 959, 1594
FokI	GGATG	7 cut(s)	110, 269, 380, 998, 1172, 1275, 1322
FriOI	GRGCYC	1 cut(s)	1077
Fsp4HI	GCNGC	3 cut(s)	609, 959, 1594
FspBI	CTAG	5 cut(s)	491, 672, 1070, 1617, 1656
GluI	GCNGC	3 cut(s)	609, 959, 1594
GsuI	CTGGAG	1 cut(s)	149
HgaI	GACGC	1 cut(s)	1037
Hin1II	CATG	4 cut(s)	161, 570, 679, 1655
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	6 cut(s)	220, 464, 680, 703, 904, 1558
HphI	GGTGA	4 cut(s)	449, 535, 712, 770
Hpy166II	GTNNAC	1 cut(s)	1388
Hpy188I	TCNGA	6 cut(s)	20, 108, 120, 378, 949, 1435
Hpy188III	TCNNGA	8 cut(s)	77, 191, 428, 461, 473, 752, 1103, 1337
Hpy8I	GTNNAC	1 cut(s)	1388
Hpy99I	CGWCG	1 cut(s)	1380
HpyAV	CCTTC	3 cut(s)	125, 862, 1018
HpyCH4III	ACNGT	4 cut(s)	10, 735, 1166, 1577
HpyCH4V	TGCA	4 cut(s)	238, 570, 1123, 1224
HpyF3I	CTNAG	8 cut(s)	17, 624, 641, 696, 920, 1032, 1053, 1271
Hsp92II	CATG	4 cut(s)	161, 570, 679, 1655
Ksp22I	TGATCA	1 cut(s)	408
Kzo9I	GATC	7 cut(s)	187, 408, 421, 646, 741, 1099, 1276
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	4 cut(s)	130, 154, 390, 1591
Lsp1109I	GCAGC	3 cut(s)	620, 970, 1605
LweI	GCATC	2 cut(s)	881, 1297
MaeI	CTAG	5 cut(s)	491, 672, 1070, 1617, 1656
MaeIII	GTNAC	7 cut(s)	335, 384, 437, 700, 775, 1400, 1448
MalI	GATC	7 cut(s)	189, 410, 423, 648, 743, 1101, 1278
MboI	GATC	7 cut(s)	187, 408, 421, 646, 741, 1099, 1276
MfeI	CAATTG	2 cut(s)	516, 908
MflI	RGATCY	3 cut(s)	187, 421, 646
MhlI	GDGCHC	2 cut(s)	1077, 1132
MlyI	GAGTC	4 cut(s)	214, 473, 697, 1552
MmeI	TCCRAC	1 cut(s)	1038
MspR9I	CCNGG	2 cut(s)	983, 1590
MunI	CAATTG	2 cut(s)	516, 908
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	2 cut(s)	983, 1590
NdeI	CATATG	1 cut(s)	895
NdeII	GATC	7 cut(s)	187, 408, 421, 646, 741, 1099, 1276
NlaIII	CATG	4 cut(s)	161, 570, 679, 1655
NlaIV	GGNNCC	2 cut(s)	648, 1587
NmuCI	GTSAC	4 cut(s)	437, 700, 775, 1400
PciSI	GCTCTTC	1 cut(s)	396
PctI	GAATGC	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	680, 904
PkrI	GCNGC	3 cut(s)	610, 960, 1595
PleI	GAGTC	4 cut(s)	214, 472, 697, 1552
PpsI	GAGTC	4 cut(s)	214, 472, 697, 1552
PshBI	ATTAAT	1 cut(s)	996
Psp124BI	GAGCTC	1 cut(s)	1077
Psp6I	CCWGG	2 cut(s)	981, 1588
PspEI	GGTNACC	1 cut(s)	437
PspGI	CCWGG	2 cut(s)	981, 1588
PspN4I	GGNNCC	2 cut(s)	648, 1587
PstI	CTGCAG	1 cut(s)	1125
PsuI	RGATCY	3 cut(s)	187, 421, 646
RsaI	GTAC	4 cut(s)	511, 900, 1389, 1428
RsaNI	GTAC	4 cut(s)	510, 899, 1388, 1427
SacI	GAGCTC	1 cut(s)	1077
SapI	GCTCTTC	1 cut(s)	396
SatI	GCNGC	3 cut(s)	609, 959, 1594
Sau3AI	GATC	7 cut(s)	187, 408, 421, 646, 741, 1099, 1276
SchI	GAGTC	4 cut(s)	214, 473, 697, 1552
ScrFI	CCNGG	2 cut(s)	983, 1590
SduI	GDGCHC	2 cut(s)	1077, 1132
SfaNI	GCATC	2 cut(s)	881, 1297
SfcI	CTRYAG	2 cut(s)	834, 1121
SspI	AATATT	2 cut(s)	581, 1064
SspMI	CTAG	5 cut(s)	491, 672, 1070, 1617, 1656
SstI	GAGCTC	1 cut(s)	1077
StyD4I	CCNGG	2 cut(s)	981, 1588
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	4 cut(s)	10, 735, 1166, 1577
TaqI	TCGA	2 cut(s)	285, 1305
TatI	WGTACW	4 cut(s)	509, 898, 1387, 1426
TfiI	GAWTC	2 cut(s)	680, 904
TscAI	CASTG	4 cut(s)	15, 632, 1257, 1409
TseFI	GTSAC	4 cut(s)	437, 700, 775, 1400
TseI	GCWGC	3 cut(s)	608, 958, 1593
Tsp45I	GTSAC	4 cut(s)	437, 700, 775, 1400
TspDTI	ATGAA	9 cut(s)	174, 469, 555, 726, 735, 1014, 1131, 1326, 1365
TspGWI	ACGGA	2 cut(s)	403, 1467
TspRI	CASTG	4 cut(s)	15, 632, 1257, 1409
VspI	ATTAAT	1 cut(s)	996
XagI	CCTNNNNNAGG	2 cut(s)	1497, 1608
XapI	RAATTY	6 cut(s)	502, 691, 850, 1002, 1313, 1332
XspI	CTAG	5 cut(s)	491, 672, 1070, 1617, 1656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.