Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006925

Physical Location & Seq

Genomic Coordinates Forward (+)

70743750 .. 70745144

Gene Structure 1395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G040040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGTTGCTTTGAAGACGTTTGATATGTCTGACATATCAGAAGAAATAGATATTGGCGATCAGTCTGCGTTTTGTCACCAAGATATTGATATTGTAGGGAAATTGCAACGAAATGTACCTCATTTCTTTGGAGAGGCCTTCTCAGAGCAGGGAAAAGTCTTTTCAAACTCTGAGGTTCAAATAAATGATCTTAAGATAAAGCTTGAGCATACAAGATCTCAACAGAAAGAACTTCAGGAAAAACTTGAGAAGAGTGAAGCTCAAAAGGAAGAGCTTCGGAAAAAGATTGTGCATCGCGAGGCTCAGAACAAAGAGCTTCAAAAAACTGAAGAAGCTCAGAGGAAAGCACTTAATGAAGTACTGCTTCAGGAGAGTGAGACTAGAAACAGAACTTTGGAACAGAGTGAGAAGCTTGGTAGGAAATTGAACAGATTGCTCAACCATTGTGATCTCCAGCATGAACAAATGAATGTAGTTTTGAATAAGTTAAAGAAGATGGAAGAAGAGTCGGTAGAAGTACGTGCTCTATACTCTACACTTATGCGCAAGGAGAACAATAATCATGATGAGCTAATCAATGTACGATACCATCTTGAAAAGACCTTCTTAGAAAAAGAAGCCTTTTCAAAATCCGAAGCTCTAAACAATGATCTTATGAAAAGGCTAGGTGAGAGTGAATCCCAAAGAAAGGAGCTTCAAGAAAAGTATGATCGTAGTGAATCTCAGAAGAAAGAGCTACAGGAGGAGCTTGAGCGGATTGAAGCTCAGAAGATAGAGCTTCAGAAAAAGGATGATCAGAGTGAAGCCGAACTGCAGGAGGCTCATAAAGAGTTCATCAATGTATGTATAGTTGTATACAACAGTTTTAAATTTCTATTGGTTTGTTATTATTCTCCATTATATTGTATTAAAATACAAGAGGCTTACACTACATGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

313

Amino Acids

37.1

Weight (kDa)

5.51

Isoelectric Point (pI)

58.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006925)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36270 FvH4_3g36300
rosa_chinensis	RchiOBHm_Chr5g0065081 RchiOBHm_Chr5g0065111
rosa_laevigata	RLG00000035750 RLG00000035757
rosa_multiflora	Rmu_sc0002915.1_g000011 Rmu_sc0002915.1_g000016 Rmu_sc0006219.1_g000001 Rmu_sc0006219.1_g000008
rosa_roxburghii	Rroxscaffold_1G00016210 Rroxscaffold_1G00016240
rosa_rugosa	Rorug05G0367600 Rorug05G0367900 Rorug05G0368000
rosa_samantha	Rh5AG426200 Rh5AG426400 Rh5AG426500 Rh5BG441400 Rh5BG441700 Rh5CG464100 Rh5CG464300 Rh5DG453900 Rh5DG454200
rosa_wichuraiana	Rw5G040040 Rw5G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	545
AccBSI	CCGCTC	1 cut(s)	754
AccI	GTMKAC	1 cut(s)	855
AccII	CGCG	1 cut(s)	297
AciI	CCGC	1 cut(s)	754
AcsI	RAATTY	1 cut(s)	869
AcuI	CTGAAG	4 cut(s)	218, 348, 350, 764
AfaI	GTAC	4 cut(s)	117, 360, 519, 582
AfiI	CCNNNNNNNGG	1 cut(s)	688
AflII	CTTAAG	1 cut(s)	191
AjuI	GAANNNNNNNTTGG	2 cut(s)	36, 68
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	1 cut(s)	371
AoxI	GGCC	1 cut(s)	135
ApoI	RAATTY	1 cut(s)	869
Asp700I	GAANNNNTTC	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	546
AsuHPI	GGTGA	2 cut(s)	68, 680
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	526
BccI	CCATC	2 cut(s)	490, 597
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BclI	TGATCA	1 cut(s)	793
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	2 cut(s)	381, 665
BfmI	CTRYAG	2 cut(s)	737, 812
BfrI	CTTAAG	1 cut(s)	191
BglII	AGATCT	1 cut(s)	215
BmcAI	AGTACT	1 cut(s)	360
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	20
BplI	GAGNNNNNCTC	4 cut(s)	125, 157, 244, 276
BpmI	CTGGAG	1 cut(s)	437
BpuEI	CTTGAG	3 cut(s)	224, 266, 770
BsaAI	YACGTR	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	1 cut(s)	688
BseGI	GGATG	1 cut(s)	796
BseLI	CCNNNNNNNGG	1 cut(s)	688
BseMII	CTCAG	6 cut(s)	156, 162, 317, 350, 737, 779
BseRI	GAGGAG	1 cut(s)	758
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	526
BslI	CCNNNNNNNGG	1 cut(s)	688
BsmAI	GTCTC	1 cut(s)	371
BsnI	GGCC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	526
Bsp143I	GATC	7 cut(s)	58, 187, 215, 448, 649, 709, 793
Bsp68I	TCGCGA	1 cut(s)	297
BspACI	CCGC	1 cut(s)	754
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	6 cut(s)	155, 163, 316, 349, 736, 778
BspFNI	CGCG	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	562
BspMAI	CTGCAG	1 cut(s)	816
BspQI	GCTCTTC	1 cut(s)	264
BspTI	CTTAAG	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	754
BssMI	GATC	7 cut(s)	58, 187, 215, 448, 649, 709, 793
BssNAI	GTATAC	1 cut(s)	856
Bst1107I	GTATAC	1 cut(s)	856
Bst4CI	ACNGT	1 cut(s)	863
Bst6I	CTCTTC	3 cut(s)	245, 264, 498
BstAFI	CTTAAG	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	521
BstDEI	CTNAG	7 cut(s)	142, 171, 303, 336, 607, 723, 765
BstF5I	GGATG	1 cut(s)	796
BstFNI	CGCG	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	546
BstKTI	GATC	7 cut(s)	61, 190, 218, 451, 652, 712, 796
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	7 cut(s)	58, 187, 215, 448, 649, 709, 793
BstSFI	CTRYAG	2 cut(s)	737, 812
BstUI	CGCG	1 cut(s)	297
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BstZ17I	GTATAC	1 cut(s)	856
BsuRI	GGCC	1 cut(s)	137
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	796
BtuMI	TCGCGA	1 cut(s)	297
CciI	TCATGA	1 cut(s)	562
CfoI	GCGC	1 cut(s)	546
Csp6I	GTAC	4 cut(s)	116, 359, 518, 581
CviAII	CATG	3 cut(s)	458, 563, 933
CviQI	GTAC	4 cut(s)	116, 359, 518, 581
DdeI	CTNAG	7 cut(s)	142, 171, 303, 336, 607, 723, 765
DpnI	GATC	7 cut(s)	60, 189, 217, 450, 651, 711, 795
DpnII	GATC	7 cut(s)	58, 187, 215, 448, 649, 709, 793
DraI	TTTAAA	1 cut(s)	868
Eam1104I	CTCTTC	3 cut(s)	245, 264, 498
EarI	CTCTTC	3 cut(s)	245, 264, 498
Eco147I	AGGCCT	1 cut(s)	137
Eco57I	CTGAAG	4 cut(s)	218, 348, 350, 764
FaeI	CATG	3 cut(s)	461, 566, 936
FalI	AAGNNNNNCTT	4 cut(s)	348, 380, 590, 622
FatI	CATG	3 cut(s)	457, 562, 932
FbaI	TGATCA	1 cut(s)	793
FblI	GTMKAC	1 cut(s)	855
FokI	GGATG	1 cut(s)	803
FspBI	CTAG	2 cut(s)	381, 665
FspI	TGCGCA	1 cut(s)	545
GlaI	GCGC	1 cut(s)	545
GsuI	CTGGAG	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	546
Hin1II	CATG	3 cut(s)	461, 566, 936
Hin6I	GCGC	1 cut(s)	544
HinP1I	GCGC	1 cut(s)	544
HindIII	AAGCTT	2 cut(s)	200, 410
HinfI	GANTC	3 cut(s)	506, 677, 719
HphI	GGTGA	2 cut(s)	68, 680
Hpy166II	GTNNAC	1 cut(s)	856
Hpy188III	TCNNGA	6 cut(s)	236, 296, 368, 563, 593, 698
Hpy8I	GTNNAC	1 cut(s)	856
HpyAV	CCTTC	2 cut(s)	148, 613
HpyCH4III	ACNGT	1 cut(s)	863
HpyCH4IV	ACGT	2 cut(s)	17, 520
HpyCH4V	TGCA	3 cut(s)	106, 292, 814
HpyF3I	CTNAG	7 cut(s)	142, 171, 303, 336, 607, 723, 765
HpySE526I	ACGT	2 cut(s)	17, 520
Hsp92II	CATG	3 cut(s)	461, 566, 936
HspAI	GCGC	1 cut(s)	544
Ksp22I	TGATCA	1 cut(s)	793
Kzo9I	GATC	7 cut(s)	58, 187, 215, 448, 649, 709, 793
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	2 cut(s)	691, 745
LpnPI	CCDG	6 cut(s)	134, 221, 353, 467, 725, 800
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	381, 665
MaeII	ACGT	2 cut(s)	17, 520
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	7 cut(s)	60, 189, 217, 450, 651, 711, 795
MbiI	CCGCTC	1 cut(s)	754
MboI	GATC	7 cut(s)	58, 187, 215, 448, 649, 709, 793
MflI	RGATCY	1 cut(s)	215
MhlI	GDGCHC	1 cut(s)	526
MluCI	AATT	3 cut(s)	101, 422, 869
MlyI	GAGTC	1 cut(s)	515
MnlI	CCTC	8 cut(s)	127, 129, 166, 292, 333, 736, 811, 913
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	6 cut(s)	192, 351, 488, 867, 909, 940
MspCI	CTTAAG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	297
NdeII	GATC	7 cut(s)	58, 187, 215, 448, 649, 709, 793
NlaIII	CATG	3 cut(s)	461, 566, 936
NmuCI	GTSAC	1 cut(s)	74
NruI	TCGCGA	1 cut(s)	297
NsbI	TGCGCA	1 cut(s)	545
PagI	TCATGA	1 cut(s)	562
PceI	AGGCCT	1 cut(s)	137
PciSI	GCTCTTC	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	677, 719
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
Ppu21I	YACGTR	1 cut(s)	521
PstI	CTGCAG	1 cut(s)	816
PsuI	RGATCY	1 cut(s)	215
RruI	TCGCGA	1 cut(s)	297
RsaI	GTAC	4 cut(s)	117, 360, 519, 582
RsaNI	GTAC	4 cut(s)	116, 359, 518, 581
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	6 cut(s)	192, 351, 488, 867, 909, 940
Sau3AI	GATC	7 cut(s)	58, 187, 215, 448, 649, 709, 793
ScaI	AGTACT	1 cut(s)	360
SchI	GAGTC	1 cut(s)	515
SduI	GDGCHC	1 cut(s)	526
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	2 cut(s)	737, 812
SmlI	CTYRAG	4 cut(s)	191, 203, 245, 749
SmoI	CTYRAG	4 cut(s)	191, 203, 245, 749
Sse9I	AATT	3 cut(s)	101, 422, 869
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	1 cut(s)	754
SspMI	CTAG	2 cut(s)	381, 665
StuI	AGGCCT	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	863
TaiI	ACGT	2 cut(s)	20, 523
TasI	AATT	3 cut(s)	101, 422, 869
TatI	WGTACW	1 cut(s)	358
TfiI	GAWTC	2 cut(s)	677, 719
Tru1I	TTAA	6 cut(s)	192, 351, 488, 867, 909, 940
Tru9I	TTAA	6 cut(s)	192, 351, 488, 867, 909, 940
TseFI	GTSAC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	5 cut(s)	369, 474, 482, 671, 823
Vha464I	CTTAAG	1 cut(s)	191
XapI	RAATTY	1 cut(s)	869
XmiI	GTMKAC	1 cut(s)	855
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	2 cut(s)	381, 665
ZrmI	AGTACT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.