Rh5CG464100

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006925
Physical Location & Seq
Forward (+)
64662046 .. 64666505
4460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG464100.1

Sequence Viewer

Length: 1959 bp
ATGGCATCCACAGGGTTCGCTAATCAAATTGAGTTTGATATGTCTGACATATCAGAAGAAATAGATATTGGCGATCAGTCTGCGTTTTGTCACCAAGATATTGATATTGGGAAATTGCAACGAAATGTACCTCATTTCTTTGGAGAGGCCTTCTCAGAGCAGGGAAAAGTCTTTTCAAACTCTGAGGTTCAAATAAATGATCTTAAGATAAAGCTTGAGCATACAAGATCTCAACAGAAAGAACTTCAGGAAAAACTTGAGAAGAGTGAAGCTCAAAAGGAAGAGCTTCGGAAAAAGATTGTGCATAGCGAGGCTCAGAACAAAGAGCTTAAGAAAACTGAAGAAGCTCAAAGGAAAGCACTTAATGAAGTACTGCTTCAGGAGAGTGAGACTAGAAACAGAACTTTGGAACAGAGTGAGAAGCTTGGTAGGAAATTGAACAGATTGCTCAACCATTGTGATCTCCAGCATGAACAAATGAATGTAGTTTTGAATAAGTTAAAGAAGATGGAAGAAGAGTCGGTAGAAGTACGTGCTCTATACTCTACACTTATGCGCAAGGAGAACAATAATCATGATGAGCTGATCAATGTACGATACCATCTTGAAAAGACCTTCTTAGAAAAAGAAGCCTTTTCAAAATCTGAAGATCTAAACAATGATCTTATGAAAAGGCTAGGTGAGAGTGAATCCCAAAGAAAGGAGCTTCAAGAAAAGTATGATCGTAGTGAATCTCAGAAGAAAGAGCTACAGGAGGAGCTTGAGCGGATTGAAGCTCAGAAGATAGAGCTTCAGAAAAAGGATGATCAGACTGAAGCCGAACTGCAGGAGGCTCATAAAGAGTTCATCAATGGACTAGGAGGTTTAAGAATTTGTTCTTTAATTGGTGTGAAGAGAATGGGAGACCTCAGCAAAGAACCATTTCAAACTTCATGCACGAGACGATATTCTTTAAAAGAAGCAGATGGCAAGGCATCAACACTATATTCTCAGTGGCAGGGCAACCTTAGGGATCCAAACTGGTATCCTTTCATAACTAGCATGGATTCTTGTGGAAATTCCAAGCTAACAATCAATGAAGACGATGAAAAATTGAAACAGATAAAGGTTGACAATCTTGGTAGTGAAGTTTACAAGGCTGTGACAACTGCTCTTGTGGAATTGAATGGCTATAATACCAATAGTAAGAGTGCAAGAACAGAATTATGGAATTTTAAAGAAGGGAGGAGGGCAACATTGAAAGAGGCAATATCGTCTGTACTGAAGCAATTGAAACTGCAGAAAAACAGGATTGGTAAAAAGTTGTCAGAACAAAAGCAACTTGATGTGAAGAAGACAAACCCGGATGAATCTGAACAGCAGCTTGATGTGAAGAAGAAAGACCCAGGTGACAGCATTAATGAAATTCAAAAGAAGTTAGAGGAGAAGGAAGATGAGTTGAGAGATTTAAAAGCTGATTTTGAATATTCAGAAGCTCTCAACTCTACACTATTTGTCAAGGAGCGGGAGAGTAATAATGAACTGCAGGATGCTCGCAAGGAGTTAATCAGGGGACTGGTGGATGACGGTTTTATTGGCGTGAAGAGAATGGGAGAGCTTGACATCACGCCTTTTGCAACTGCATGCAAGAGAGACCATTCTATGCTAGAACCAGAGGTGTGGCAAGATTATCTTAGTGATCCAAGCTGGCATCCGTTTAAAGCAATCGAGGATGAATTTGGAAATCGGAAGGAAATTCTTGATGTAGAAGATGAAAAATTGAAGAGTATAAAGGGCGACGATGCAGTGTACAAGGCAGTCACAACTGCCTTGATGGAATTGAAGGAGTACAATTCGAGTGGAATGTATGTGACAGATGAACTATGGAACTTTCAAAAAGGGAGGAGGGCAACACTACAGGAGGGATTATCATATATATTATTAAACTGGAGACCTCTGAAAAGGAAAAGAAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XH XS zf-XS

Protein Analysis

652

Amino Acids

75.82

Weight (kDa)

5.57

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 298 - 429 4.6e-41 XH domain
XH PF03469 528 - 649 4e-36 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 557
AccBSI CCGCTC 2 cut(s) 766, 1504
AciI CCGC 2 cut(s) 766, 1504
AclWI GGATC 3 cut(s) 1007, 1020, 1673
AcsI RAATTY 7 cut(s) 870, 1057, 1210, 1404, 1715, 1734, 1953
AcuI CTGAAG 7 cut(s) 230, 360, 362, 666, 776, 834, 1283
AfaI GTAC 7 cut(s) 129, 372, 531, 594, 1260, 1790, 1829
AfiI CCNNNNNNNGG 1 cut(s) 700
AflII CTTAAG 2 cut(s) 203, 329
AjnI CCWGG 1 cut(s) 1384
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
Alw21I GWGCWC 1 cut(s) 538
Alw26I GTCTC 5 cut(s) 383, 897, 934, 1626, 1924
AlwI GGATC 3 cut(s) 1007, 1020, 1673
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 1360
ApoI RAATTY 7 cut(s) 870, 1057, 1210, 1404, 1715, 1734, 1953
AseI ATTAAT 1 cut(s) 1398
Asp700I GAANNNNTTC 3 cut(s) 285, 874, 921
AspLEI GCGC 1 cut(s) 558
AsuC2I CCSGG 1 cut(s) 1343
AsuHPI GGTGA 3 cut(s) 83, 692, 1400
AxyI CCTNAGG 1 cut(s) 1007
BamHI GGATCC 1 cut(s) 1012
BauI CACGAG 1 cut(s) 937
BbsI GAAGAC 2 cut(s) 1086, 1340
Bbv12I GWGCWC 1 cut(s) 538
BbvCI CCTCAGC 1 cut(s) 908
BbvI GCAGC 1 cut(s) 1372
BccI CCATC 4 cut(s) 502, 609, 959, 1807
BcgI CGANNNNNNTGC 4 cut(s) 62, 96, 1514, 1548
BciT130I CCWGG 1 cut(s) 1386
BciVI GTATCC 1 cut(s) 1035
BclI TGATCA 2 cut(s) 585, 805
BcnI CCSGG 1 cut(s) 1343
BcoDI GTCTC 5 cut(s) 383, 897, 934, 1626, 1924
BfaI CTAG 5 cut(s) 393, 677, 857, 1038, 1646
BfmI CTRYAG 5 cut(s) 749, 824, 1277, 1523, 1895
BfrI CTTAAG 2 cut(s) 203, 329
BfuI GTATCC 1 cut(s) 1035
BglII AGATCT 2 cut(s) 227, 649
BisI GCNGC 1 cut(s) 1361
BlsI GCNGC 1 cut(s) 1362
BmcAI AGTACT 1 cut(s) 372
Bme1390I CCNGG 2 cut(s) 1343, 1386
BmiI GGNNCC 1 cut(s) 1014
BmrFI CCNGG 2 cut(s) 1343, 1386
BmsI GCATC 5 cut(s) 14, 983, 1519, 1699, 1771
BpiI GAAGAC 2 cut(s) 1086, 1340
BplI GAGNNNNNCTC 4 cut(s) 137, 169, 256, 288
BpmI CTGGAG 2 cut(s) 449, 1948
Bpu10I CCTNAGC 1 cut(s) 908
BpuEI CTTGAG 3 cut(s) 236, 278, 782
BpuMI CCSGG 1 cut(s) 1343
BsaAI YACGTR 1 cut(s) 533
BsaI GGTCTC 3 cut(s) 897, 1626, 1924
BsaJI CCNNGG 1 cut(s) 1384
Bsc4I CCNNNNNNNGG 1 cut(s) 700
Bse1I ACTGG 3 cut(s) 1025, 1560, 1931
Bse21I CCTNAGG 1 cut(s) 1007
BseBI CCWGG 1 cut(s) 1386
BseDI CCNNGG 1 cut(s) 1384
BseGI GGATG 7 cut(s) 5, 808, 1351, 1534, 1567, 1690, 1717
BseLI CCNNNNNNNGG 1 cut(s) 700
BseMII CTCAG 7 cut(s) 168, 174, 329, 749, 791, 922, 1004
BseNI ACTGG 3 cut(s) 1025, 1560, 1931
BseRI GAGGAG 4 cut(s) 770, 1240, 1436, 1897
BseXI GCAGC 1 cut(s) 1372
BshFI GGCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 538
BsiSI CCGG 1 cut(s) 1343
BslFI GGGAC 1 cut(s) 1566
BslI CCNNNNNNNGG 1 cut(s) 700
BsmAI GTCTC 5 cut(s) 383, 897, 934, 1626, 1924
BsmBI CGTCTC 1 cut(s) 934
BsmFI GGGAC 1 cut(s) 1566
BsnI GGCC 1 cut(s) 149
Bso31I GGTCTC 3 cut(s) 897, 1626, 1924
Bsp1286I GDGCHC 1 cut(s) 538
Bsp1407I TGTACA 1 cut(s) 1788
BspACI CCGC 2 cut(s) 766, 1504
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 7 cut(s) 167, 175, 328, 748, 790, 921, 1003
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 1 cut(s) 1014
BspMAI CTGCAG 3 cut(s) 828, 1281, 1527
BspPI GGATC 3 cut(s) 1007, 1020, 1673
BspQI GCTCTTC 1 cut(s) 276
BspTI CTTAAG 2 cut(s) 203, 329
BspTNI GGTCTC 3 cut(s) 897, 1626, 1924
BsrBI CCGCTC 2 cut(s) 766, 1504
BsrGI TGTACA 1 cut(s) 1788
BsrI ACTGG 3 cut(s) 1025, 1560, 1931
BssECI CCNNGG 1 cut(s) 1384
BssSI CACGAG 1 cut(s) 937
Bst2BI CACGAG 1 cut(s) 937
Bst2UI CCWGG 1 cut(s) 1386
Bst4CI ACNGT 1 cut(s) 1568
Bst6I CTCTTC 6 cut(s) 257, 276, 510, 887, 1577, 1757
BstAFI CTTAAG 2 cut(s) 203, 329
BstAUI TGTACA 1 cut(s) 1788
BstBAI YACGTR 1 cut(s) 533
BstC8I GCNNGC 3 cut(s) 1534, 1624, 1688
BstF5I GGATG 7 cut(s) 5, 808, 1351, 1534, 1567, 1690, 1717
BstHHI GCGC 1 cut(s) 558
BstMAI GTCTC 5 cut(s) 383, 897, 934, 1626, 1924
BstNI CCWGG 1 cut(s) 1386
BstNSI RCATGY 1 cut(s) 1626
BstSCI CCNGG 2 cut(s) 1341, 1384
BstSFI CTRYAG 5 cut(s) 749, 824, 1277, 1523, 1895
BstV1I GCAGC 1 cut(s) 1372
BstV2I GAAGAC 2 cut(s) 1086, 1340
BstX2I RGATCY 3 cut(s) 227, 649, 1012
BstXI CCANNNNNNTGG 1 cut(s) 1659
BstYI RGATCY 3 cut(s) 227, 649, 1012
Bsu36I CCTNAGG 1 cut(s) 1007
BsuI GTATCC 1 cut(s) 1035
BsuRI GGCC 1 cut(s) 149
BtsCI GGATG 7 cut(s) 5, 808, 1351, 1534, 1567, 1690, 1717
BtsI GCAGTG 1 cut(s) 1791
BtsIMutI CAGTG 2 cut(s) 998, 1791
Cac8I GCNNGC 3 cut(s) 1534, 1624, 1688
CciI TCATGA 1 cut(s) 574
CfoI GCGC 1 cut(s) 558
Csp6I GTAC 7 cut(s) 128, 371, 530, 593, 1259, 1789, 1828
CspCI CAANNNNNGTGG 2 cut(s) 1819, 1854
CviAII CATG 5 cut(s) 470, 575, 933, 1042, 1623
CviQI GTAC 7 cut(s) 128, 371, 530, 593, 1259, 1789, 1828
DraI TTTAAA 4 cut(s) 954, 1216, 1449, 1699
Eam1104I CTCTTC 6 cut(s) 257, 276, 510, 887, 1577, 1757
EarI CTCTTC 6 cut(s) 257, 276, 510, 887, 1577, 1757
Eco147I AGGCCT 1 cut(s) 149
Eco31I GGTCTC 3 cut(s) 897, 1626, 1924
Eco57I CTGAAG 7 cut(s) 230, 360, 362, 666, 776, 834, 1283
Eco81I CCTNAGG 1 cut(s) 1007
EcoRII CCWGG 1 cut(s) 1384
Esp3I CGTCTC 1 cut(s) 934
FaeI CATG 5 cut(s) 473, 578, 936, 1045, 1626
FalI AAGNNNNNCTT 6 cut(s) 360, 392, 602, 634, 1656, 1688
FaqI GGGAC 1 cut(s) 1566
FatI CATG 5 cut(s) 469, 574, 932, 1041, 1622
FauI CCCGC 1 cut(s) 1497
FbaI TGATCA 2 cut(s) 585, 805
Fnu4HI GCNGC 1 cut(s) 1361
FokI GGATG 6 cut(s) 815, 1358, 1541, 1574, 1677, 1724
Fsp4HI GCNGC 1 cut(s) 1361
FspBI CTAG 5 cut(s) 393, 677, 857, 1038, 1646
FspI TGCGCA 1 cut(s) 557
GlaI GCGC 1 cut(s) 557
GluI GCNGC 1 cut(s) 1361
GsuI CTGGAG 2 cut(s) 449, 1948
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 1343
HhaI GCGC 1 cut(s) 558
Hin1II CATG 5 cut(s) 473, 578, 936, 1045, 1626
Hin6I GCGC 1 cut(s) 556
HinP1I GCGC 1 cut(s) 556
HincII GTYRAC 1 cut(s) 1111
HindII GTYRAC 1 cut(s) 1111
HindIII AAGCTT 2 cut(s) 212, 422
HinfI GANTC 5 cut(s) 518, 689, 731, 1046, 1349
HpaII CCGG 1 cut(s) 1343
HphI GGTGA 3 cut(s) 83, 692, 1400
Hpy166II GTNNAC 3 cut(s) 1111, 1132, 1789
Hpy188III TCNNGA 6 cut(s) 248, 380, 575, 605, 710, 1739
Hpy8I GTNNAC 3 cut(s) 1111, 1132, 1789
Hpy99I CGWCG 1 cut(s) 1781
HpyAV CCTTC 6 cut(s) 160, 625, 1214, 1420, 1723, 1816
HpyCH4III ACNGT 1 cut(s) 1568
HpyCH4IV ACGT 1 cut(s) 532
HpySE526I ACGT 1 cut(s) 532
Hsp92II CATG 5 cut(s) 473, 578, 936, 1045, 1626
HspAI GCGC 1 cut(s) 556
Ksp22I TGATCA 2 cut(s) 585, 805
LguI GCTCTTC 1 cut(s) 276
LmnI GCTCC 3 cut(s) 703, 757, 1501
Lsp1109I GCAGC 1 cut(s) 1372
LweI GCATC 5 cut(s) 14, 983, 1519, 1699, 1771
MaeI CTAG 5 cut(s) 393, 677, 857, 1038, 1646
MaeII ACGT 1 cut(s) 532
MaeIII GTNAC 5 cut(s) 89, 1141, 1388, 1798, 1849
MbiI CCGCTC 2 cut(s) 766, 1504
MfeI CAATTG 1 cut(s) 1268
MflI RGATCY 3 cut(s) 227, 649, 1012
MhlI GDGCHC 1 cut(s) 538
MlyI GAGTC 1 cut(s) 527
MroXI GAANNNNTTC 3 cut(s) 285, 874, 921
MspCI CTTAAG 2 cut(s) 203, 329
MspI CCGG 1 cut(s) 1343
MspR9I CCNGG 2 cut(s) 1343, 1386
MunI CAATTG 1 cut(s) 1268
MvaI CCWGG 1 cut(s) 1386
NciI CCSGG 1 cut(s) 1343
NlaIII CATG 5 cut(s) 473, 578, 936, 1045, 1626
NlaIV GGNNCC 1 cut(s) 1014
NmuCI GTSAC 5 cut(s) 89, 1141, 1388, 1798, 1849
NsbI TGCGCA 1 cut(s) 557
NspI RCATGY 1 cut(s) 1626
PaeI GCATGC 1 cut(s) 1626
PagI TCATGA 1 cut(s) 574
PceI AGGCCT 1 cut(s) 149
PciSI GCTCTTC 1 cut(s) 276
PdmI GAANNNNTTC 3 cut(s) 285, 874, 921
PfeI GAWTC 4 cut(s) 689, 731, 1046, 1349
PkrI GCNGC 1 cut(s) 1362
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
Ppu21I YACGTR 1 cut(s) 533
PshBI ATTAAT 1 cut(s) 1398
Psp6I CCWGG 1 cut(s) 1384
PspGI CCWGG 1 cut(s) 1384
PspN4I GGNNCC 1 cut(s) 1014
PstI CTGCAG 3 cut(s) 828, 1281, 1527
PsuI RGATCY 3 cut(s) 227, 649, 1012
RsaI GTAC 7 cut(s) 129, 372, 531, 594, 1260, 1790, 1829
RsaNI GTAC 7 cut(s) 128, 371, 530, 593, 1259, 1789, 1828
SapI GCTCTTC 1 cut(s) 276
SatI GCNGC 1 cut(s) 1361
ScaI AGTACT 1 cut(s) 372
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 2 cut(s) 1343, 1386
SduI GDGCHC 1 cut(s) 538
SfaNI GCATC 5 cut(s) 14, 983, 1519, 1699, 1771
SfcI CTRYAG 5 cut(s) 749, 824, 1277, 1523, 1895
SmlI CTYRAG 5 cut(s) 203, 215, 257, 329, 761
SmoI CTYRAG 5 cut(s) 203, 215, 257, 329, 761
SphI GCATGC 1 cut(s) 1626
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 2 cut(s) 766, 1504
SspI AATATT 1 cut(s) 1466
SspMI CTAG 5 cut(s) 393, 677, 857, 1038, 1646
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 1341, 1384
TaaI ACNGT 1 cut(s) 1568
TaiI ACGT 1 cut(s) 535
TaqI TCGA 2 cut(s) 1707, 1835
TatI WGTACW 4 cut(s) 370, 1258, 1788, 1827
TfiI GAWTC 4 cut(s) 689, 731, 1046, 1349
TscAI CASTG 2 cut(s) 998, 1791
TseFI GTSAC 5 cut(s) 89, 1141, 1388, 1798, 1849
TseI GCWGC 1 cut(s) 1360
Tsp45I GTSAC 5 cut(s) 89, 1141, 1388, 1798, 1849
TspGWI ACGGA 1 cut(s) 1683
TspRI CASTG 2 cut(s) 998, 1791
Vha464I CTTAAG 2 cut(s) 203, 329
VspI ATTAAT 1 cut(s) 1398
XapI RAATTY 7 cut(s) 870, 1057, 1210, 1404, 1715, 1734, 1953
XceI RCATGY 1 cut(s) 1626
XmnI GAANNNNTTC 3 cut(s) 285, 874, 921
XspI CTAG 5 cut(s) 393, 677, 857, 1038, 1646
ZrmI AGTACT 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.