Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006925

Physical Location & Seq

Genomic Coordinates Forward (+)

72460789 .. 72461491

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG454200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCTGTCAGAACAAAAGCAGCTTGATATGAAGAAGAAAAAACCGGATGATGGGACTAATGAAATTCAAAAGAAGTTAGAGGAGAAGGAAGCTGAGTTGAAAGATTTAAAAGCTGAGTTAGAATATTCAGAAGAGCTCAACTCTACACTATTTGTCAAGGAGCGTGAAAGTAACGATGAACTGCAGGATGCTCGCAAGGAGTTGATCAGGGAACTGGTGGATGGCGGTTTTATTGGCGTGAAGAGAATGGGAGAGCTTGACATCACCCCTTTTGCAACCGCATGCAAGAGAAATAATTCTATGCTAGAACCAGAGGTGTGGCAGGATTGTATTAGTGATCCAAGCTGGTATCCTTTTAAACCGATCGAGGATGAATTTGGAAATCGGAAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

131

Amino Acids

15.29

Weight (kDa)

4.72

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	81 - 126	7e-07	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006925)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36270 FvH4_3g36300
rosa_chinensis	RchiOBHm_Chr5g0065081 RchiOBHm_Chr5g0065111
rosa_laevigata	RLG00000035750 RLG00000035757
rosa_multiflora	Rmu_sc0002915.1_g000011 Rmu_sc0002915.1_g000016 Rmu_sc0006219.1_g000001 Rmu_sc0006219.1_g000008
rosa_roxburghii	Rroxscaffold_1G00016210 Rroxscaffold_1G00016240
rosa_rugosa	Rorug05G0367600 Rorug05G0367900 Rorug05G0368000
rosa_samantha	Rh5AG426200 Rh5AG426400 Rh5AG426500 Rh5BG441400 Rh5BG441700 Rh5CG464100 Rh5CG464300 Rh5DG453900 Rh5DG454200
rosa_wichuraiana	Rw5G040040 Rw5G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	225, 279
AclWI	GGATC	1 cut(s)	332
AcsI	RAATTY	2 cut(s)	63, 374
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	68, 100
AluBI	AGCT	6 cut(s)	22, 92, 113, 136, 256, 345
AluI	AGCT	6 cut(s)	22, 92, 113, 136, 256, 345
Alw21I	GWGCWC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	2 cut(s)	63, 374
Asp700I	GAANNNNTTC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	2 cut(s)	44, 215
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciVI	GTATCC	1 cut(s)	360
BclI	TGATCA	1 cut(s)	204
BfaI	CTAG	1 cut(s)	305
BfmI	CTRYAG	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	360
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
BmsI	GCATC	1 cut(s)	178
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	219
BseGI	GGATG	4 cut(s)	52, 193, 226, 376
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	2 cut(s)	84, 105
BseNI	ACTGG	1 cut(s)	219
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	366
BsiEI	CGRYCG	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	204, 337, 363
BspACI	CCGC	2 cut(s)	225, 279
BspCNI	CTCAG	2 cut(s)	85, 106
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	1 cut(s)	332
BspQI	GCTCTTC	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	219
BssMI	GATC	3 cut(s)	204, 337, 363
Bst6I	CTCTTC	2 cut(s)	126, 236
BstC8I	GCNNGC	2 cut(s)	193, 283
BstDEI	CTNAG	2 cut(s)	93, 114
BstF5I	GGATG	4 cut(s)	52, 193, 226, 376
BstKTI	GATC	3 cut(s)	207, 340, 366
BstMBI	GATC	3 cut(s)	204, 337, 363
BstMCI	CGRYCG	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	318
BsuI	GTATCC	1 cut(s)	360
BtsCI	GGATG	4 cut(s)	52, 193, 226, 376
Cac8I	GCNNGC	2 cut(s)	193, 283
CviAII	CATG	1 cut(s)	282
CviJI	RGCY	6 cut(s)	22, 92, 113, 136, 256, 345
CviKI_1	RGCY	6 cut(s)	22, 92, 113, 136, 256, 345
DdeI	CTNAG	2 cut(s)	93, 114
DpnI	GATC	3 cut(s)	206, 339, 365
DpnII	GATC	3 cut(s)	204, 337, 363
DraI	TTTAAA	2 cut(s)	108, 358
Eam1104I	CTCTTC	2 cut(s)	126, 236
EarI	CTCTTC	2 cut(s)	126, 236
Ecl136II	GAGCTC	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	138
FaeI	CATG	1 cut(s)	285
FaiI	YATR	4 cut(s)	29, 283, 302, 394
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	1 cut(s)	281
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	4 cut(s)	59, 200, 233, 383
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	1 cut(s)	20
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	1 cut(s)	285
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	10, 130, 387
HpyAV	CCTTC	2 cut(s)	79, 382
HpyCH4V	TGCA	3 cut(s)	184, 275, 285
HpyF3I	CTNAG	2 cut(s)	93, 114
Hsp92II	CATG	1 cut(s)	285
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	3 cut(s)	204, 337, 363
LguI	GCTCTTC	1 cut(s)	126
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	7 cut(s)	57, 170, 193, 200, 308, 324, 331
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	3 cut(s)	206, 339, 365
MboI	GATC	3 cut(s)	204, 337, 363
MboII	GAAGA	4 cut(s)	43, 46, 143, 253
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	3 cut(s)	63, 295, 374
MnlI	CCTC	3 cut(s)	73, 307, 361
MroXI	GAANNNNTTC	1 cut(s)	295
MseI	TTAA	2 cut(s)	107, 357
MspI	CCGG	1 cut(s)	44
NdeII	GATC	3 cut(s)	204, 337, 363
NlaIII	CATG	1 cut(s)	285
NspI	RCATGY	1 cut(s)	285
PaeI	GCATGC	1 cut(s)	285
PciSI	GCTCTTC	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	295
PkrI	GCNGC	1 cut(s)	21
Ple19I	CGATCG	1 cut(s)	366
Psp124BI	GAGCTC	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	186
PvuI	CGATCG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	138
SapI	GCTCTTC	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	107, 357
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	3 cut(s)	204, 337, 363
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	8 cut(s)	24, 94, 115, 138, 258, 318, 347, 393
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	182
SphI	GCATGC	1 cut(s)	285
Sse9I	AATT	3 cut(s)	63, 295, 374
SsiI	CCGC	2 cut(s)	225, 279
SspI	AATATT	1 cut(s)	125
SspMI	CTAG	1 cut(s)	305
SstI	GAGCTC	1 cut(s)	138
TaqI	TCGA	1 cut(s)	366
TasI	AATT	3 cut(s)	63, 295, 374
Tru1I	TTAA	2 cut(s)	107, 357
Tru9I	TTAA	2 cut(s)	107, 357
TseI	GCWGC	1 cut(s)	19
TspDTI	ATGAA	4 cut(s)	44, 75, 192, 387
XapI	RAATTY	2 cut(s)	63, 374
XceI	RCATGY	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	295
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.