Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006925

Physical Location & Seq

Genomic Coordinates Reverse (-)

20184468 .. 20192374

Gene Structure 7907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00016210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGTTAATCAAATTCGAGGCCTGACTATCAATGAAGAAGATGAAAAATTGAAACAGTTAAAGGTCTGCAATCTTGATATTGAAGTATACAAGGTCTGCAATCTTGATATTGAAGTATACAAGGCTGTGACAACTGCCTTGGTGGAATTGAATAGCTATAATACCAATGGTAGGACTCCAATAGCAGAATTATGGAATTTTAAAGAAGGGAGGAAGGCAACAGTGAAAGAGGGAATATCGTATGTACTACTGAACCAATTGAAACTGCTAAGAAAGAGGGTTGGTAAAATGCTGTCAGAACAAAAGCAGCTTGATATGAAGAAGAAAAAACCGGATGATGGGACTAATGAAATTCAAAAGAAGTTAGAGGAGAAGGAAGCTGAGTTGAAAGATTTAAAAGCTGAGTTAGAATATTCAGAAGAGCTCAACTCTACACTATTTTCCAAGGAGCGTGAAAGTAACGATGAACTGCAGGATGCTCGCAAGGAGTTAATCAGGGAACTGGTGGATGGCGGTTTTATTGGCGTGAAGAGAATGGGAGAGCTTGACATCACCCCTTTTGCAACTGCATGCAAGAGAGATAATTCTATGCTAGAACCAGAGGTGTGGCAGGATTGTATTAGTGATCCAAGCTGGTATCCTTTTAAACTGATCGAAAATGAATTTGGAAATCGGAAGGAAATTCTTGATGTAGAAGATGAAAAATTGAAGAGTATAAAGGGCAACGATGGAGTGTACAAGGCAGTCACAACTGCTTTGATGGAACTGAAGGACTACAATTCGAGTGGTATGTATGTGACAGAAGAACTATGGAACTTTCAAAAAGGAAGGAGGGCAACACTACAAGAGGGATTATCATATATAATATTGAACTGGAGATCTCTGAAAAAGAAAAGAAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

301

Amino Acids

34.95

Weight (kDa)

5.75

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	7 - 91	1.9e-18	XH domain
XH	PF03469	177 - 298	5.9e-35	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006925)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36270 FvH4_3g36300
rosa_chinensis	RchiOBHm_Chr5g0065081 RchiOBHm_Chr5g0065111
rosa_laevigata	RLG00000035750 RLG00000035757
rosa_multiflora	Rmu_sc0002915.1_g000011 Rmu_sc0002915.1_g000016 Rmu_sc0006219.1_g000001 Rmu_sc0006219.1_g000008
rosa_roxburghii	Rroxscaffold_1G00016210 Rroxscaffold_1G00016240
rosa_rugosa	Rorug05G0367600 Rorug05G0367900 Rorug05G0368000
rosa_samantha	Rh5AG426200 Rh5AG426400 Rh5AG426500 Rh5BG441400 Rh5BG441700 Rh5CG464100 Rh5CG464300 Rh5DG453900 Rh5DG454200
rosa_wichuraiana	Rw5G040040 Rw5G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	87, 117
AciI	CCGC	1 cut(s)	513
AclWI	GGATC	1 cut(s)	620
AcsI	RAATTY	6 cut(s)	12, 196, 351, 662, 681, 900
AcuI	CTGAAG	1 cut(s)	788
AfaI	GTAC	2 cut(s)	246, 737
AfiI	CCNNNNNNNGG	2 cut(s)	171, 338
AjuI	GAANNNNNNNTTGG	2 cut(s)	648, 680
AluBI	AGCT	7 cut(s)	156, 310, 380, 401, 424, 544, 633
AluI	AGCT	7 cut(s)	156, 310, 380, 401, 424, 544, 633
Alw21I	GWGCWC	1 cut(s)	426
AlwI	GGATC	1 cut(s)	620
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	6 cut(s)	12, 196, 351, 662, 681, 900
AsuHPI	GGTGA	1 cut(s)	544
BanII	GRGCYC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	4 cut(s)	332, 503, 722, 754
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BciVI	GTATCC	1 cut(s)	648
BfaI	CTAG	1 cut(s)	593
BfmI	CTRYAG	1 cut(s)	470
BfuI	GTATCC	1 cut(s)	648
BglII	AGATCT	1 cut(s)	878
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
BmsI	GCATC	1 cut(s)	466
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BpmI	CTGGAG	1 cut(s)	895
BsaJI	CCNNGG	2 cut(s)	138, 444
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	2 cut(s)	171, 338
Bse1I	ACTGG	2 cut(s)	507, 878
BseDI	CCNNGG	2 cut(s)	138, 444
BseGI	GGATG	3 cut(s)	340, 481, 514
BseLI	CCNNNNNNNGG	2 cut(s)	171, 338
BseMII	CTCAG	2 cut(s)	372, 393
BseNI	ACTGG	2 cut(s)	507, 878
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	1 cut(s)	319
BshFI	GGCC	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	2 cut(s)	171, 338
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp1407I	TGTACA	1 cut(s)	735
Bsp143I	GATC	3 cut(s)	625, 651, 878
BspACI	CCGC	1 cut(s)	513
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	2 cut(s)	373, 394
BspMAI	CTGCAG	1 cut(s)	474
BspPI	GGATC	1 cut(s)	620
BspQI	GCTCTTC	1 cut(s)	414
BsrGI	TGTACA	1 cut(s)	735
BsrI	ACTGG	2 cut(s)	507, 878
BssECI	CCNNGG	2 cut(s)	138, 444
BssMI	GATC	3 cut(s)	625, 651, 878
BssNAI	GTATAC	2 cut(s)	88, 118
BssT1I	CCWWGG	2 cut(s)	138, 444
Bst1107I	GTATAC	2 cut(s)	88, 118
Bst4CI	ACNGT	2 cut(s)	57, 223
Bst6I	CTCTTC	3 cut(s)	414, 524, 704
BstAUI	TGTACA	1 cut(s)	735
BstC8I	GCNNGC	2 cut(s)	481, 571
BstDEI	CTNAG	3 cut(s)	269, 381, 402
BstF5I	GGATG	3 cut(s)	340, 481, 514
BstKTI	GATC	3 cut(s)	628, 654, 881
BstMBI	GATC	3 cut(s)	625, 651, 878
BstNSI	RCATGY	1 cut(s)	573
BstSFI	CTRYAG	1 cut(s)	470
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	878
BstXI	CCANNNNNNTGG	1 cut(s)	606
BstYI	RGATCY	1 cut(s)	878
BstZ17I	GTATAC	2 cut(s)	88, 118
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	340, 481, 514
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	481, 571
Csp6I	GTAC	2 cut(s)	245, 736
CspCI	CAANNNNNGTGG	2 cut(s)	766, 801
CviAII	CATG	1 cut(s)	570
CviJI	RGCY	9 cut(s)	21, 125, 156, 310, 380, 401, 424, 544, 633
CviKI_1	RGCY	9 cut(s)	21, 125, 156, 310, 380, 401, 424, 544, 633
CviQI	GTAC	2 cut(s)	245, 736
DdeI	CTNAG	3 cut(s)	269, 381, 402
DpnI	GATC	3 cut(s)	627, 653, 880
DpnII	GATC	3 cut(s)	625, 651, 878
DraI	TTTAAA	3 cut(s)	202, 396, 646
Eam1104I	CTCTTC	3 cut(s)	414, 524, 704
EarI	CTCTTC	3 cut(s)	414, 524, 704
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	2 cut(s)	138, 444
Eco147I	AGGCCT	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	426
Eco53kI	GAGCTC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	788
EcoICRI	GAGCTC	1 cut(s)	424
EcoT14I	CCWWGG	2 cut(s)	138, 444
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	2 cut(s)	138, 444
FaeI	CATG	1 cut(s)	573
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	1 cut(s)	569
FblI	GTMKAC	2 cut(s)	87, 117
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	3 cut(s)	347, 488, 521
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	1 cut(s)	593
GluI	GCNGC	1 cut(s)	308
GsuI	CTGGAG	1 cut(s)	895
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	1 cut(s)	573
HinfI	GANTC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	3 cut(s)	88, 118, 736
Hpy188I	TCNGA	4 cut(s)	298, 418, 675, 885
Hpy188III	TCNNGA	3 cut(s)	74, 104, 686
Hpy8I	GTNNAC	3 cut(s)	88, 118, 736
HpyAV	CCTTC	6 cut(s)	200, 208, 367, 670, 763, 822
HpyCH4III	ACNGT	2 cut(s)	57, 223
HpyCH4V	TGCA	6 cut(s)	69, 99, 472, 563, 569, 573
HpyF3I	CTNAG	3 cut(s)	269, 381, 402
Hsp92II	CATG	1 cut(s)	573
Kzo9I	GATC	3 cut(s)	625, 651, 878
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	9 cut(s)	35, 345, 458, 481, 488, 596, 612, 619, 859
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	1 cut(s)	593
MaeIII	GTNAC	4 cut(s)	127, 458, 745, 796
MalI	GATC	3 cut(s)	627, 653, 880
MboI	GATC	3 cut(s)	625, 651, 878
MboII	GAAGA	9 cut(s)	47, 50, 331, 334, 431, 541, 707, 721, 815
MfeI	CAATTG	1 cut(s)	257
MflI	RGATCY	1 cut(s)	878
MhlI	GDGCHC	1 cut(s)	426
MlyI	GAGTC	1 cut(s)	169
MnlI	CCTC	8 cut(s)	11, 204, 223, 270, 361, 595, 825, 841
MseI	TTAA	6 cut(s)	6, 59, 201, 395, 491, 645
MspI	CCGG	1 cut(s)	332
MunI	CAATTG	1 cut(s)	257
NdeII	GATC	3 cut(s)	625, 651, 878
NlaIII	CATG	1 cut(s)	573
NmuCI	GTSAC	3 cut(s)	127, 745, 796
NspI	RCATGY	1 cut(s)	573
PaeI	GCATGC	1 cut(s)	573
PceI	AGGCCT	1 cut(s)	21
PciSI	GCTCTTC	1 cut(s)	414
PkrI	GCNGC	1 cut(s)	309
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
Psp124BI	GAGCTC	1 cut(s)	426
PstI	CTGCAG	1 cut(s)	474
PsuI	RGATCY	1 cut(s)	878
RsaI	GTAC	2 cut(s)	246, 737
RsaNI	GTAC	2 cut(s)	245, 736
SacI	GAGCTC	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	6 cut(s)	6, 59, 201, 395, 491, 645
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	3 cut(s)	625, 651, 878
SchI	GAGTC	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	426
SfaNI	GCATC	1 cut(s)	466
SfcI	CTRYAG	1 cut(s)	470
SphI	GCATGC	1 cut(s)	573
SseBI	AGGCCT	1 cut(s)	21
SsiI	CCGC	1 cut(s)	513
SspI	AATATT	2 cut(s)	413, 867
SspMI	CTAG	1 cut(s)	593
SstI	GAGCTC	1 cut(s)	426
StuI	AGGCCT	1 cut(s)	21
StyI	CCWWGG	2 cut(s)	138, 444
TaaI	ACNGT	2 cut(s)	57, 223
TaqI	TCGA	3 cut(s)	16, 654, 782
TatI	WGTACW	2 cut(s)	244, 735
Tru1I	TTAA	6 cut(s)	6, 59, 201, 395, 491, 645
Tru9I	TTAA	6 cut(s)	6, 59, 201, 395, 491, 645
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	3 cut(s)	127, 745, 796
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	3 cut(s)	127, 745, 796
TspDTI	ATGAA	7 cut(s)	48, 57, 332, 363, 480, 675, 714
TspRI	CASTG	1 cut(s)	228
XapI	RAATTY	6 cut(s)	12, 196, 351, 662, 681, 900
XceI	RCATGY	1 cut(s)	573
XmiI	GTMKAC	2 cut(s)	87, 117
XspI	CTAG	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.