RLG00000035750

XH domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
71223803 .. 71228032
4230 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035750

Sequence Viewer

Length: 1983 bp
ATGAAAGGCACAAGACTGCCCCGCCCCGCCCAATTCACCAAGGTCCTCGTTGCCAAATGGTTTGATATGTCTGACATATCAGAAGAAATAGATATTGGCGATCAGTCTGTGTTTTGCCACCAAGATATTGATATTGGGAAATTGCAACGAAATGTACCTCATCTCTTTGGAGAGGCCTTCTCAGAGCAGGGAAAAGTCTTTTCAAACTCTGAGGTTCAAATAAATGATCTTAAGATAAAGCTTGAGCATACAAGATCTCAACAGAAAGAACTTCAGGAAAAACTTGAGAAGAGTGAAGCTCAAAAGGAAGAGCTCCGGAAAAAGATTGTGCGTAGCGAGGCTCAGAACAAAGAGCTTAGGAAAACTGAAGAAGCTCAAAGGAAAGCACTTAATGAAGTGCTTCAGGAGAGTGAGACTAGAAACAGAACTCTGGAACAGAATGAGAAGCTTGGTAGGAAATTGAACAGATTGCTCAACCATTGTGATCTCCAGCATGAACAAATGAATGTAGTTTTGAATAAGTTAAAGAAGATGGAAGAAGAGTCGGTAGAAGTACGTGCTCTATACTCTACACTTATGCGCAAGGAGAACAATAATCATGATGAGCTGATCAATGTACGATACCATCTTGAAAAGACCTTCTTAGAAAAAGAAGCCTTTTCAAAATCTGAAGATCTAAACAATGATCTTATGAAAAGGCTAGGTGAGAGTGAATCCCAAAGAAAGGAGCTTCAAGAAAAGCATGATCATAGTGAATCTCAGAAGAAAGAGCTACAGGAGGAGCTTGAGCGGATTGAAGCTCAGAAGATAGAGCTTCAGAAAAAGGATGATCAGAGTGAAGCCGAACTGCAGGATGCTCATAAAGAGTTCATCAATGGACTAGGAGGTTTAAGAATTTGTTCTTTAATTGGTGTGAAGAGAATGGGAGACCTCAGCAAAGAACCATTTCAAACTTCATGCACGAGACGATATTCTTTAAAAGAAGCAGATGGCAAGGCAGCAACACTATATTCTCAGTGGCAGGACAACCTTAGGGATCCAAACTGGTATCCTTTCATAACTAGCATGGATTCTTGTGGAAATTCCAAGCTAACAATCAATGAAGATGATGAAAAATTGAAACAGATAAAGGTCGACAATCTTGGTAGTGAAGTTTACAAGGCTGTGACAACTGCTCTTGTGGAACTGAATGGCTATGATACCAATGGTAAGAGTGCAAGAGCAGAATTATGGAATTTTAAAGAAGGGAGGAAGGCAACATTGAAAGAGGCAATATCATCTGTACTGAAGCAATTGAAACTGCAGAAAAAAAGGATTGGTAAAAAGTTGTCAGAACAAAAGCAACTTGATGTGAAGAAGACAAACCCGGATGAATTGGAACAGCAGCTTGATGTGAAGAAGAAAGACCCGGGTGACAGCGTTAATGAAATTCAAAAGAAGTTAGAGGAGAAGGAAGATGAGTTGAAAGATTTAAAAGCTGATTTTGAATATTCAGAAGCTCTCAACTCTACACTATTTGTCAAGGAGCGTGAAAGTAATAATGAACTGCAGGATGCTCGCAAGGAGTTAATCAGGGGACTGGTGGATGACGGTTTTATTGGCGTGAAGAGAATGGGAGAGCTTGACATCACGCCTTTTGCAACTGCATGCAAGAGAGACCATTCTATGCTAGAACCAGAGGTGTGGCAAGATTATCTTAGTGATCCAAGTTGGCATCCGTTTAAAGCGATCGAGGATGAATTTGGAAATCGGAAGGAGATTCTTGATGTAGAAGATGAAACATTGAAGAGTATAAAGGGCGACGATGCAGTGTACAAGGCAGTCACAACTGCCTTGATGGAATTGAAGGAGTACAATTCGAGTGGTATGTATGTGACAGATGAACTATGGAACTTTCAAAAAGGGCGGAGGGCAACACTACAGGAGGGATTATCATATATATTATTAAACTGGAGACCTCTGAAAAGGAAAAGAAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

661

Amino Acids

76.79

Weight (kDa)

5.83

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 306 - 437 1.1e-41 XH domain
XH PF03469 536 - 657 2.2e-35 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 581
AccBSI CCGCTC 1 cut(s) 790
AccI GTMKAC 1 cut(s) 1134
AccIII TCCGGA 1 cut(s) 315
AciI CCGC 4 cut(s) 22, 27, 790, 1906
AclWI GGATC 3 cut(s) 1031, 1044, 1697
AcsI RAATTY 6 cut(s) 894, 1081, 1234, 1428, 1739, 1977
AcuI CTGAAG 6 cut(s) 257, 386, 387, 690, 800, 1307
AfaI GTAC 6 cut(s) 156, 555, 618, 1284, 1814, 1853
AfiI CCNNNNNNNGG 1 cut(s) 724
AflII CTTAAG 1 cut(s) 230
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
Alw21I GWGCWC 2 cut(s) 315, 562
Alw26I GTCTC 5 cut(s) 407, 921, 958, 1650, 1948
AlwI GGATC 3 cut(s) 1031, 1044, 1697
Ama87I CYCGRG 1 cut(s) 1408
Aor13HI TCCGGA 1 cut(s) 315
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 2 cut(s) 998, 1384
ApoI RAATTY 6 cut(s) 894, 1081, 1234, 1428, 1739, 1977
Asp700I GAANNNNTTC 3 cut(s) 399, 898, 945
AspLEI GCGC 1 cut(s) 582
AspS9I GGNCC 1 cut(s) 43
AsuC2I CCSGG 3 cut(s) 1367, 1409, 1410
AsuHPI GGTGA 3 cut(s) 28, 716, 1424
AvaI CYCGRG 1 cut(s) 1408
AvaII GGWCC 1 cut(s) 43
AxyI CCTNAGG 1 cut(s) 1031
BamHI GGATCC 1 cut(s) 1036
BanII GRGCYC 1 cut(s) 315
BauI CACGAG 1 cut(s) 961
BbsI GAAGAC 1 cut(s) 1364
Bbv12I GWGCWC 2 cut(s) 315, 562
BbvCI CCTCAGC 1 cut(s) 932
BbvI GCAGC 2 cut(s) 1010, 1396
BccI CCATC 4 cut(s) 526, 633, 983, 1831
BcgI CGANNNNNNTGC 2 cut(s) 1538, 1572
BciVI GTATCC 1 cut(s) 1059
BclI TGATCA 3 cut(s) 609, 745, 829
BcnI CCSGG 3 cut(s) 1367, 1409, 1410
BcoDI GTCTC 5 cut(s) 407, 921, 958, 1650, 1948
BfaI CTAG 5 cut(s) 417, 701, 881, 1062, 1670
BfmI CTRYAG 5 cut(s) 773, 848, 1301, 1547, 1919
BfrI CTTAAG 1 cut(s) 230
BfuI GTATCC 1 cut(s) 1059
BglII AGATCT 2 cut(s) 254, 673
BisI GCNGC 2 cut(s) 999, 1385
BlsI GCNGC 2 cut(s) 1000, 1386
Bme1390I CCNGG 3 cut(s) 1367, 1409, 1410
Bme18I GGWCC 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 1408
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 1038
BmrFI CCNGG 3 cut(s) 1367, 1409, 1410
BmsI GCATC 4 cut(s) 844, 1543, 1723, 1795
BpiI GAAGAC 1 cut(s) 1364
BplI GAGNNNNNCTC 4 cut(s) 164, 196, 283, 315
BpmI CTGGAG 2 cut(s) 473, 1972
Bpu10I CCTNAGC 2 cut(s) 356, 932
BpuEI CTTGAG 3 cut(s) 263, 305, 806
BpuMI CCSGG 3 cut(s) 1367, 1409, 1410
BsaAI YACGTR 1 cut(s) 557
BsaI GGTCTC 3 cut(s) 921, 1650, 1948
BsaJI CCNNGG 2 cut(s) 39, 1408
BsaWI WCCGGW 1 cut(s) 315
Bsc4I CCNNNNNNNGG 1 cut(s) 724
Bse1I ACTGG 3 cut(s) 1049, 1584, 1955
Bse21I CCTNAGG 1 cut(s) 1031
BseAI TCCGGA 1 cut(s) 315
BseDI CCNNGG 2 cut(s) 39, 1408
BseGI GGATG 7 cut(s) 832, 859, 1375, 1558, 1591, 1714, 1741
BseLI CCNNNNNNNGG 1 cut(s) 724
BseMII CTCAG 7 cut(s) 195, 201, 356, 773, 815, 946, 1028
BseNI ACTGG 3 cut(s) 1049, 1584, 1955
BseRI GAGGAG 2 cut(s) 794, 1460
BseXI GCAGC 2 cut(s) 1010, 1396
Bsh1285I CGRYCG 1 cut(s) 1731
BshFI GGCC 1 cut(s) 176
BsiEI CGRYCG 1 cut(s) 1731
BsiHKAI GWGCWC 2 cut(s) 315, 562
BsiHKCI CYCGRG 1 cut(s) 1408
BsiSI CCGG 3 cut(s) 316, 1367, 1409
BslFI GGGAC 1 cut(s) 1590
BslI CCNNNNNNNGG 1 cut(s) 724
BsmAI GTCTC 5 cut(s) 407, 921, 958, 1650, 1948
BsmBI CGTCTC 1 cut(s) 958
BsmFI GGGAC 1 cut(s) 1590
BsnI GGCC 1 cut(s) 176
Bso31I GGTCTC 3 cut(s) 921, 1650, 1948
BsoBI CYCGRG 1 cut(s) 1408
Bsp1286I GDGCHC 2 cut(s) 315, 562
Bsp13I TCCGGA 1 cut(s) 315
Bsp1407I TGTACA 1 cut(s) 1812
BspACI CCGC 4 cut(s) 22, 27, 790, 1906
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 7 cut(s) 194, 202, 355, 772, 814, 945, 1027
BspEI TCCGGA 1 cut(s) 315
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 1038
BspMAI CTGCAG 3 cut(s) 852, 1305, 1551
BspPI GGATC 3 cut(s) 1031, 1044, 1697
BspQI GCTCTTC 1 cut(s) 303
BspTI CTTAAG 1 cut(s) 230
BspTNI GGTCTC 3 cut(s) 921, 1650, 1948
BsrBI CCGCTC 1 cut(s) 790
BsrGI TGTACA 1 cut(s) 1812
BsrI ACTGG 3 cut(s) 1049, 1584, 1955
BssECI CCNNGG 2 cut(s) 39, 1408
BssSI CACGAG 1 cut(s) 961
BssT1I CCWWGG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 961
Bst4CI ACNGT 1 cut(s) 1592
Bst6I CTCTTC 6 cut(s) 284, 303, 534, 911, 1601, 1781
BstAFI CTTAAG 1 cut(s) 230
BstAUI TGTACA 1 cut(s) 1812
BstBAI YACGTR 1 cut(s) 557
BstC8I GCNNGC 2 cut(s) 1558, 1648
BstF5I GGATG 7 cut(s) 832, 859, 1375, 1558, 1591, 1714, 1741
BstHHI GCGC 1 cut(s) 582
BstMAI GTCTC 5 cut(s) 407, 921, 958, 1650, 1948
BstMCI CGRYCG 1 cut(s) 1731
BstNSI RCATGY 1 cut(s) 1650
BstSCI CCNGG 3 cut(s) 1365, 1407, 1408
BstSFI CTRYAG 5 cut(s) 773, 848, 1301, 1547, 1919
BstV1I GCAGC 2 cut(s) 1010, 1396
BstV2I GAAGAC 1 cut(s) 1364
BstX2I RGATCY 3 cut(s) 254, 673, 1036
BstXI CCANNNNNNTGG 1 cut(s) 1683
BstYI RGATCY 3 cut(s) 254, 673, 1036
Bsu36I CCTNAGG 1 cut(s) 1031
BsuI GTATCC 1 cut(s) 1059
BsuRI GGCC 1 cut(s) 176
BtsCI GGATG 7 cut(s) 832, 859, 1375, 1558, 1591, 1714, 1741
BtsI GCAGTG 1 cut(s) 1815
BtsIMutI CAGTG 2 cut(s) 1022, 1815
Cac8I GCNNGC 2 cut(s) 1558, 1648
CciI TCATGA 1 cut(s) 598
CfoI GCGC 1 cut(s) 582
Cfr13I GGNCC 1 cut(s) 43
Cfr9I CCCGGG 1 cut(s) 1408
Csp6I GTAC 6 cut(s) 155, 554, 617, 1283, 1813, 1852
CspCI CAANNNNNGTGG 2 cut(s) 1843, 1878
CviAII CATG 6 cut(s) 494, 599, 743, 957, 1066, 1647
CviQI GTAC 6 cut(s) 155, 554, 617, 1283, 1813, 1852
DraI TTTAAA 4 cut(s) 978, 1240, 1473, 1723
Eam1104I CTCTTC 6 cut(s) 284, 303, 534, 911, 1601, 1781
EarI CTCTTC 6 cut(s) 284, 303, 534, 911, 1601, 1781
EciI GGCGGA 1 cut(s) 1921
Ecl136II GAGCTC 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 39
Eco147I AGGCCT 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 315
Eco31I GGTCTC 3 cut(s) 921, 1650, 1948
Eco47I GGWCC 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 313
Eco57I CTGAAG 6 cut(s) 257, 386, 387, 690, 800, 1307
Eco81I CCTNAGG 1 cut(s) 1031
Eco88I CYCGRG 1 cut(s) 1408
EcoICRI GAGCTC 1 cut(s) 313
EcoO109I RGGNCCY 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 39
Esp3I CGTCTC 1 cut(s) 958
FaeI CATG 6 cut(s) 497, 602, 746, 960, 1069, 1650
FalI AAGNNNNNCTT 4 cut(s) 626, 658, 1680, 1712
FaqI GGGAC 1 cut(s) 1590
FatI CATG 6 cut(s) 493, 598, 742, 956, 1065, 1646
FauI CCCGC 2 cut(s) 29, 34
FbaI TGATCA 3 cut(s) 609, 745, 829
FblI GTMKAC 1 cut(s) 1134
Fnu4HI GCNGC 2 cut(s) 999, 1385
FokI GGATG 7 cut(s) 839, 866, 1382, 1565, 1598, 1701, 1748
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 2 cut(s) 999, 1385
FspBI CTAG 5 cut(s) 417, 701, 881, 1062, 1670
FspI TGCGCA 1 cut(s) 581
GlaI GCGC 1 cut(s) 581
GluI GCNGC 2 cut(s) 999, 1385
GsuI CTGGAG 2 cut(s) 473, 1972
HaeIII GGCC 1 cut(s) 176
HapII CCGG 3 cut(s) 316, 1367, 1409
HhaI GCGC 1 cut(s) 582
Hin1II CATG 6 cut(s) 497, 602, 746, 960, 1069, 1650
Hin6I GCGC 1 cut(s) 580
HinP1I GCGC 1 cut(s) 580
HincII GTYRAC 1 cut(s) 1135
HindII GTYRAC 1 cut(s) 1135
HindIII AAGCTT 2 cut(s) 239, 446
HinfI GANTC 5 cut(s) 542, 713, 755, 1070, 1759
HpaII CCGG 3 cut(s) 316, 1367, 1409
HphI GGTGA 3 cut(s) 28, 716, 1424
Hpy166II GTNNAC 3 cut(s) 1135, 1156, 1813
Hpy188III TCNNGA 8 cut(s) 275, 316, 404, 431, 599, 629, 734, 1763
Hpy8I GTNNAC 3 cut(s) 1135, 1156, 1813
Hpy99I CGWCG 1 cut(s) 1805
HpyAV CCTTC 7 cut(s) 187, 649, 1238, 1246, 1444, 1747, 1840
HpyCH4III ACNGT 1 cut(s) 1592
HpyCH4IV ACGT 1 cut(s) 556
HpySE526I ACGT 1 cut(s) 556
Hsp92II CATG 6 cut(s) 497, 602, 746, 960, 1069, 1650
HspAI GCGC 1 cut(s) 580
Kpn2I TCCGGA 1 cut(s) 315
Ksp22I TGATCA 3 cut(s) 609, 745, 829
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 4 cut(s) 318, 727, 781, 1525
Lsp1109I GCAGC 2 cut(s) 1010, 1396
LweI GCATC 4 cut(s) 844, 1543, 1723, 1795
MaeI CTAG 5 cut(s) 417, 701, 881, 1062, 1670
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 4 cut(s) 1165, 1412, 1822, 1873
MbiI CCGCTC 1 cut(s) 790
MfeI CAATTG 1 cut(s) 1292
MflI RGATCY 3 cut(s) 254, 673, 1036
MhlI GDGCHC 2 cut(s) 315, 562
MlyI GAGTC 1 cut(s) 551
MroI TCCGGA 1 cut(s) 315
MroXI GAANNNNTTC 3 cut(s) 399, 898, 945
MspCI CTTAAG 1 cut(s) 230
MspI CCGG 3 cut(s) 316, 1367, 1409
MspR9I CCNGG 3 cut(s) 1367, 1409, 1410
MunI CAATTG 1 cut(s) 1292
NciI CCSGG 3 cut(s) 1367, 1409, 1410
NlaIII CATG 6 cut(s) 497, 602, 746, 960, 1069, 1650
NlaIV GGNNCC 1 cut(s) 1038
NmuCI GTSAC 4 cut(s) 1165, 1412, 1822, 1873
NsbI TGCGCA 1 cut(s) 581
NspI RCATGY 1 cut(s) 1650
PaeI GCATGC 1 cut(s) 1650
PagI TCATGA 1 cut(s) 598
PceI AGGCCT 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 303
PdmI GAANNNNTTC 3 cut(s) 399, 898, 945
PfeI GAWTC 4 cut(s) 713, 755, 1070, 1759
PkrI GCNGC 2 cut(s) 1000, 1386
Ple19I CGATCG 1 cut(s) 1731
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
Ppu21I YACGTR 1 cut(s) 557
PpuMI RGGWCCY 1 cut(s) 43
Psp124BI GAGCTC 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 1038
PspPI GGNCC 1 cut(s) 43
PspPPI RGGWCCY 1 cut(s) 43
PstI CTGCAG 3 cut(s) 852, 1305, 1551
PsuI RGATCY 3 cut(s) 254, 673, 1036
PvuI CGATCG 1 cut(s) 1731
RsaI GTAC 6 cut(s) 156, 555, 618, 1284, 1814, 1853
RsaNI GTAC 6 cut(s) 155, 554, 617, 1283, 1813, 1852
SacI GAGCTC 1 cut(s) 315
SalI GTCGAC 1 cut(s) 1133
SapI GCTCTTC 1 cut(s) 303
SatI GCNGC 2 cut(s) 999, 1385
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 3 cut(s) 1367, 1409, 1410
SduI GDGCHC 2 cut(s) 315, 562
SfaNI GCATC 4 cut(s) 844, 1543, 1723, 1795
SfcI CTRYAG 5 cut(s) 773, 848, 1301, 1547, 1919
SinI GGWCC 1 cut(s) 43
SmaI CCCGGG 1 cut(s) 1410
SmlI CTYRAG 4 cut(s) 230, 242, 284, 785
SmoI CTYRAG 4 cut(s) 230, 242, 284, 785
SphI GCATGC 1 cut(s) 1650
SseBI AGGCCT 1 cut(s) 176
SsiI CCGC 4 cut(s) 22, 27, 790, 1906
SspI AATATT 1 cut(s) 1490
SspMI CTAG 5 cut(s) 417, 701, 881, 1062, 1670
SstI GAGCTC 1 cut(s) 315
StuI AGGCCT 1 cut(s) 176
StyD4I CCNGG 3 cut(s) 1365, 1407, 1408
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 1592
TaiI ACGT 1 cut(s) 559
TaqI TCGA 3 cut(s) 1134, 1731, 1859
TatI WGTACW 3 cut(s) 1282, 1812, 1851
TfiI GAWTC 4 cut(s) 713, 755, 1070, 1759
TscAI CASTG 2 cut(s) 1022, 1815
TseFI GTSAC 4 cut(s) 1165, 1412, 1822, 1873
TseI GCWGC 2 cut(s) 998, 1384
Tsp45I GTSAC 4 cut(s) 1165, 1412, 1822, 1873
TspGWI ACGGA 1 cut(s) 1707
TspMI CCCGGG 1 cut(s) 1408
TspRI CASTG 2 cut(s) 1022, 1815
Vha464I CTTAAG 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 6 cut(s) 894, 1081, 1234, 1428, 1739, 1977
XceI RCATGY 1 cut(s) 1650
XmaI CCCGGG 1 cut(s) 1408
XmiI GTMKAC 1 cut(s) 1134
XmnI GAANNNNTTC 3 cut(s) 399, 898, 945
XspI CTAG 5 cut(s) 417, 701, 881, 1062, 1670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.