XH domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g36270 FvH4_3g36300 |
| rosa_chinensis | RchiOBHm_Chr5g0065081 RchiOBHm_Chr5g0065111 |
| rosa_laevigata | RLG00000035750 RLG00000035757 |
| rosa_multiflora | Rmu_sc0002915.1_g000011 Rmu_sc0002915.1_g000016 Rmu_sc0006219.1_g000001 Rmu_sc0006219.1_g000008 |
| rosa_roxburghii | Rroxscaffold_1G00016210 Rroxscaffold_1G00016240 |
| rosa_rugosa | Rorug05G0367600 Rorug05G0367900 Rorug05G0368000 |
| rosa_samantha | Rh5AG426200 Rh5AG426400 Rh5AG426500 Rh5BG441400 Rh5BG441700 Rh5CG464100 Rh5CG464300 Rh5DG453900 Rh5DG454200 |
| rosa_wichuraiana | Rw5G040040 Rw5G040060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 581 |
| AccBSI | CCGCTC | 1 cut(s) | 790 |
| AccI | GTMKAC | 1 cut(s) | 1134 |
| AccIII | TCCGGA | 1 cut(s) | 315 |
| AciI | CCGC | 4 cut(s) | 22, 27, 790, 1906 |
| AclWI | GGATC | 3 cut(s) | 1031, 1044, 1697 |
| AcsI | RAATTY | 6 cut(s) | 894, 1081, 1234, 1428, 1739, 1977 |
| AcuI | CTGAAG | 6 cut(s) | 257, 386, 387, 690, 800, 1307 |
| AfaI | GTAC | 6 cut(s) | 156, 555, 618, 1284, 1814, 1853 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 724 |
| AflII | CTTAAG | 1 cut(s) | 230 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 78, 110 |
| Alw21I | GWGCWC | 2 cut(s) | 315, 562 |
| Alw26I | GTCTC | 5 cut(s) | 407, 921, 958, 1650, 1948 |
| AlwI | GGATC | 3 cut(s) | 1031, 1044, 1697 |
| Ama87I | CYCGRG | 1 cut(s) | 1408 |
| Aor13HI | TCCGGA | 1 cut(s) | 315 |
| AoxI | GGCC | 1 cut(s) | 174 |
| ApeKI | GCWGC | 2 cut(s) | 998, 1384 |
| ApoI | RAATTY | 6 cut(s) | 894, 1081, 1234, 1428, 1739, 1977 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 399, 898, 945 |
| AspLEI | GCGC | 1 cut(s) | 582 |
| AspS9I | GGNCC | 1 cut(s) | 43 |
| AsuC2I | CCSGG | 3 cut(s) | 1367, 1409, 1410 |
| AsuHPI | GGTGA | 3 cut(s) | 28, 716, 1424 |
| AvaI | CYCGRG | 1 cut(s) | 1408 |
| AvaII | GGWCC | 1 cut(s) | 43 |
| AxyI | CCTNAGG | 1 cut(s) | 1031 |
| BamHI | GGATCC | 1 cut(s) | 1036 |
| BanII | GRGCYC | 1 cut(s) | 315 |
| BauI | CACGAG | 1 cut(s) | 961 |
| BbsI | GAAGAC | 1 cut(s) | 1364 |
| Bbv12I | GWGCWC | 2 cut(s) | 315, 562 |
| BbvCI | CCTCAGC | 1 cut(s) | 932 |
| BbvI | GCAGC | 2 cut(s) | 1010, 1396 |
| BccI | CCATC | 4 cut(s) | 526, 633, 983, 1831 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1538, 1572 |
| BciVI | GTATCC | 1 cut(s) | 1059 |
| BclI | TGATCA | 3 cut(s) | 609, 745, 829 |
| BcnI | CCSGG | 3 cut(s) | 1367, 1409, 1410 |
| BcoDI | GTCTC | 5 cut(s) | 407, 921, 958, 1650, 1948 |
| BfaI | CTAG | 5 cut(s) | 417, 701, 881, 1062, 1670 |
| BfmI | CTRYAG | 5 cut(s) | 773, 848, 1301, 1547, 1919 |
| BfrI | CTTAAG | 1 cut(s) | 230 |
| BfuI | GTATCC | 1 cut(s) | 1059 |
| BglII | AGATCT | 2 cut(s) | 254, 673 |
| BisI | GCNGC | 2 cut(s) | 999, 1385 |
| BlsI | GCNGC | 2 cut(s) | 1000, 1386 |
| Bme1390I | CCNGG | 3 cut(s) | 1367, 1409, 1410 |
| Bme18I | GGWCC | 1 cut(s) | 43 |
| BmeT110I | CYCGRG | 1 cut(s) | 1408 |
| BmgT120I | GGNCC | 1 cut(s) | 43 |
| BmiI | GGNNCC | 1 cut(s) | 1038 |
| BmrFI | CCNGG | 3 cut(s) | 1367, 1409, 1410 |
| BmsI | GCATC | 4 cut(s) | 844, 1543, 1723, 1795 |
| BpiI | GAAGAC | 1 cut(s) | 1364 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 164, 196, 283, 315 |
| BpmI | CTGGAG | 2 cut(s) | 473, 1972 |
| Bpu10I | CCTNAGC | 2 cut(s) | 356, 932 |
| BpuEI | CTTGAG | 3 cut(s) | 263, 305, 806 |
| BpuMI | CCSGG | 3 cut(s) | 1367, 1409, 1410 |
| BsaAI | YACGTR | 1 cut(s) | 557 |
| BsaI | GGTCTC | 3 cut(s) | 921, 1650, 1948 |
| BsaJI | CCNNGG | 2 cut(s) | 39, 1408 |
| BsaWI | WCCGGW | 1 cut(s) | 315 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 724 |
| Bse1I | ACTGG | 3 cut(s) | 1049, 1584, 1955 |
| Bse21I | CCTNAGG | 1 cut(s) | 1031 |
| BseAI | TCCGGA | 1 cut(s) | 315 |
| BseDI | CCNNGG | 2 cut(s) | 39, 1408 |
| BseGI | GGATG | 7 cut(s) | 832, 859, 1375, 1558, 1591, 1714, 1741 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 724 |
| BseMII | CTCAG | 7 cut(s) | 195, 201, 356, 773, 815, 946, 1028 |
| BseNI | ACTGG | 3 cut(s) | 1049, 1584, 1955 |
| BseRI | GAGGAG | 2 cut(s) | 794, 1460 |
| BseXI | GCAGC | 2 cut(s) | 1010, 1396 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1731 |
| BshFI | GGCC | 1 cut(s) | 176 |
| BsiEI | CGRYCG | 1 cut(s) | 1731 |
| BsiHKAI | GWGCWC | 2 cut(s) | 315, 562 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1408 |
| BsiSI | CCGG | 3 cut(s) | 316, 1367, 1409 |
| BslFI | GGGAC | 1 cut(s) | 1590 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 724 |
| BsmAI | GTCTC | 5 cut(s) | 407, 921, 958, 1650, 1948 |
| BsmBI | CGTCTC | 1 cut(s) | 958 |
| BsmFI | GGGAC | 1 cut(s) | 1590 |
| BsnI | GGCC | 1 cut(s) | 176 |
| Bso31I | GGTCTC | 3 cut(s) | 921, 1650, 1948 |
| BsoBI | CYCGRG | 1 cut(s) | 1408 |
| Bsp1286I | GDGCHC | 2 cut(s) | 315, 562 |
| Bsp13I | TCCGGA | 1 cut(s) | 315 |
| Bsp1407I | TGTACA | 1 cut(s) | 1812 |
| BspACI | CCGC | 4 cut(s) | 22, 27, 790, 1906 |
| BspANI | GGCC | 1 cut(s) | 176 |
| BspCNI | CTCAG | 7 cut(s) | 194, 202, 355, 772, 814, 945, 1027 |
| BspEI | TCCGGA | 1 cut(s) | 315 |
| BspHI | TCATGA | 1 cut(s) | 598 |
| BspLI | GGNNCC | 1 cut(s) | 1038 |
| BspMAI | CTGCAG | 3 cut(s) | 852, 1305, 1551 |
| BspPI | GGATC | 3 cut(s) | 1031, 1044, 1697 |
| BspQI | GCTCTTC | 1 cut(s) | 303 |
| BspTI | CTTAAG | 1 cut(s) | 230 |
| BspTNI | GGTCTC | 3 cut(s) | 921, 1650, 1948 |
| BsrBI | CCGCTC | 1 cut(s) | 790 |
| BsrGI | TGTACA | 1 cut(s) | 1812 |
| BsrI | ACTGG | 3 cut(s) | 1049, 1584, 1955 |
| BssECI | CCNNGG | 2 cut(s) | 39, 1408 |
| BssSI | CACGAG | 1 cut(s) | 961 |
| BssT1I | CCWWGG | 1 cut(s) | 39 |
| Bst2BI | CACGAG | 1 cut(s) | 961 |
| Bst4CI | ACNGT | 1 cut(s) | 1592 |
| Bst6I | CTCTTC | 6 cut(s) | 284, 303, 534, 911, 1601, 1781 |
| BstAFI | CTTAAG | 1 cut(s) | 230 |
| BstAUI | TGTACA | 1 cut(s) | 1812 |
| BstBAI | YACGTR | 1 cut(s) | 557 |
| BstC8I | GCNNGC | 2 cut(s) | 1558, 1648 |
| BstF5I | GGATG | 7 cut(s) | 832, 859, 1375, 1558, 1591, 1714, 1741 |
| BstHHI | GCGC | 1 cut(s) | 582 |
| BstMAI | GTCTC | 5 cut(s) | 407, 921, 958, 1650, 1948 |
| BstMCI | CGRYCG | 1 cut(s) | 1731 |
| BstNSI | RCATGY | 1 cut(s) | 1650 |
| BstSCI | CCNGG | 3 cut(s) | 1365, 1407, 1408 |
| BstSFI | CTRYAG | 5 cut(s) | 773, 848, 1301, 1547, 1919 |
| BstV1I | GCAGC | 2 cut(s) | 1010, 1396 |
| BstV2I | GAAGAC | 1 cut(s) | 1364 |
| BstX2I | RGATCY | 3 cut(s) | 254, 673, 1036 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1683 |
| BstYI | RGATCY | 3 cut(s) | 254, 673, 1036 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1031 |
| BsuI | GTATCC | 1 cut(s) | 1059 |
| BsuRI | GGCC | 1 cut(s) | 176 |
| BtsCI | GGATG | 7 cut(s) | 832, 859, 1375, 1558, 1591, 1714, 1741 |
| BtsI | GCAGTG | 1 cut(s) | 1815 |
| BtsIMutI | CAGTG | 2 cut(s) | 1022, 1815 |
| Cac8I | GCNNGC | 2 cut(s) | 1558, 1648 |
| CciI | TCATGA | 1 cut(s) | 598 |
| CfoI | GCGC | 1 cut(s) | 582 |
| Cfr13I | GGNCC | 1 cut(s) | 43 |
| Cfr9I | CCCGGG | 1 cut(s) | 1408 |
| Csp6I | GTAC | 6 cut(s) | 155, 554, 617, 1283, 1813, 1852 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1843, 1878 |
| CviAII | CATG | 6 cut(s) | 494, 599, 743, 957, 1066, 1647 |
| CviQI | GTAC | 6 cut(s) | 155, 554, 617, 1283, 1813, 1852 |
| DraI | TTTAAA | 4 cut(s) | 978, 1240, 1473, 1723 |
| Eam1104I | CTCTTC | 6 cut(s) | 284, 303, 534, 911, 1601, 1781 |
| EarI | CTCTTC | 6 cut(s) | 284, 303, 534, 911, 1601, 1781 |
| EciI | GGCGGA | 1 cut(s) | 1921 |
| Ecl136II | GAGCTC | 1 cut(s) | 313 |
| Eco130I | CCWWGG | 1 cut(s) | 39 |
| Eco147I | AGGCCT | 1 cut(s) | 176 |
| Eco24I | GRGCYC | 1 cut(s) | 315 |
| Eco31I | GGTCTC | 3 cut(s) | 921, 1650, 1948 |
| Eco47I | GGWCC | 1 cut(s) | 43 |
| Eco53kI | GAGCTC | 1 cut(s) | 313 |
| Eco57I | CTGAAG | 6 cut(s) | 257, 386, 387, 690, 800, 1307 |
| Eco81I | CCTNAGG | 1 cut(s) | 1031 |
| Eco88I | CYCGRG | 1 cut(s) | 1408 |
| EcoICRI | GAGCTC | 1 cut(s) | 313 |
| EcoO109I | RGGNCCY | 1 cut(s) | 43 |
| EcoT14I | CCWWGG | 1 cut(s) | 39 |
| EcoT38I | GRGCYC | 1 cut(s) | 315 |
| ErhI | CCWWGG | 1 cut(s) | 39 |
| Esp3I | CGTCTC | 1 cut(s) | 958 |
| FaeI | CATG | 6 cut(s) | 497, 602, 746, 960, 1069, 1650 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 626, 658, 1680, 1712 |
| FaqI | GGGAC | 1 cut(s) | 1590 |
| FatI | CATG | 6 cut(s) | 493, 598, 742, 956, 1065, 1646 |
| FauI | CCCGC | 2 cut(s) | 29, 34 |
| FbaI | TGATCA | 3 cut(s) | 609, 745, 829 |
| FblI | GTMKAC | 1 cut(s) | 1134 |
| Fnu4HI | GCNGC | 2 cut(s) | 999, 1385 |
| FokI | GGATG | 7 cut(s) | 839, 866, 1382, 1565, 1598, 1701, 1748 |
| FriOI | GRGCYC | 1 cut(s) | 315 |
| Fsp4HI | GCNGC | 2 cut(s) | 999, 1385 |
| FspBI | CTAG | 5 cut(s) | 417, 701, 881, 1062, 1670 |
| FspI | TGCGCA | 1 cut(s) | 581 |
| GlaI | GCGC | 1 cut(s) | 581 |
| GluI | GCNGC | 2 cut(s) | 999, 1385 |
| GsuI | CTGGAG | 2 cut(s) | 473, 1972 |
| HaeIII | GGCC | 1 cut(s) | 176 |
| HapII | CCGG | 3 cut(s) | 316, 1367, 1409 |
| HhaI | GCGC | 1 cut(s) | 582 |
| Hin1II | CATG | 6 cut(s) | 497, 602, 746, 960, 1069, 1650 |
| Hin6I | GCGC | 1 cut(s) | 580 |
| HinP1I | GCGC | 1 cut(s) | 580 |
| HincII | GTYRAC | 1 cut(s) | 1135 |
| HindII | GTYRAC | 1 cut(s) | 1135 |
| HindIII | AAGCTT | 2 cut(s) | 239, 446 |
| HinfI | GANTC | 5 cut(s) | 542, 713, 755, 1070, 1759 |
| HpaII | CCGG | 3 cut(s) | 316, 1367, 1409 |
| HphI | GGTGA | 3 cut(s) | 28, 716, 1424 |
| Hpy166II | GTNNAC | 3 cut(s) | 1135, 1156, 1813 |
| Hpy188III | TCNNGA | 8 cut(s) | 275, 316, 404, 431, 599, 629, 734, 1763 |
| Hpy8I | GTNNAC | 3 cut(s) | 1135, 1156, 1813 |
| Hpy99I | CGWCG | 1 cut(s) | 1805 |
| HpyAV | CCTTC | 7 cut(s) | 187, 649, 1238, 1246, 1444, 1747, 1840 |
| HpyCH4III | ACNGT | 1 cut(s) | 1592 |
| HpyCH4IV | ACGT | 1 cut(s) | 556 |
| HpySE526I | ACGT | 1 cut(s) | 556 |
| Hsp92II | CATG | 6 cut(s) | 497, 602, 746, 960, 1069, 1650 |
| HspAI | GCGC | 1 cut(s) | 580 |
| Kpn2I | TCCGGA | 1 cut(s) | 315 |
| Ksp22I | TGATCA | 3 cut(s) | 609, 745, 829 |
| LguI | GCTCTTC | 1 cut(s) | 303 |
| LmnI | GCTCC | 4 cut(s) | 318, 727, 781, 1525 |
| Lsp1109I | GCAGC | 2 cut(s) | 1010, 1396 |
| LweI | GCATC | 4 cut(s) | 844, 1543, 1723, 1795 |
| MaeI | CTAG | 5 cut(s) | 417, 701, 881, 1062, 1670 |
| MaeII | ACGT | 1 cut(s) | 556 |
| MaeIII | GTNAC | 4 cut(s) | 1165, 1412, 1822, 1873 |
| MbiI | CCGCTC | 1 cut(s) | 790 |
| MfeI | CAATTG | 1 cut(s) | 1292 |
| MflI | RGATCY | 3 cut(s) | 254, 673, 1036 |
| MhlI | GDGCHC | 2 cut(s) | 315, 562 |
| MlyI | GAGTC | 1 cut(s) | 551 |
| MroI | TCCGGA | 1 cut(s) | 315 |
| MroXI | GAANNNNTTC | 3 cut(s) | 399, 898, 945 |
| MspCI | CTTAAG | 1 cut(s) | 230 |
| MspI | CCGG | 3 cut(s) | 316, 1367, 1409 |
| MspR9I | CCNGG | 3 cut(s) | 1367, 1409, 1410 |
| MunI | CAATTG | 1 cut(s) | 1292 |
| NciI | CCSGG | 3 cut(s) | 1367, 1409, 1410 |
| NlaIII | CATG | 6 cut(s) | 497, 602, 746, 960, 1069, 1650 |
| NlaIV | GGNNCC | 1 cut(s) | 1038 |
| NmuCI | GTSAC | 4 cut(s) | 1165, 1412, 1822, 1873 |
| NsbI | TGCGCA | 1 cut(s) | 581 |
| NspI | RCATGY | 1 cut(s) | 1650 |
| PaeI | GCATGC | 1 cut(s) | 1650 |
| PagI | TCATGA | 1 cut(s) | 598 |
| PceI | AGGCCT | 1 cut(s) | 176 |
| PciSI | GCTCTTC | 1 cut(s) | 303 |
| PdmI | GAANNNNTTC | 3 cut(s) | 399, 898, 945 |
| PfeI | GAWTC | 4 cut(s) | 713, 755, 1070, 1759 |
| PkrI | GCNGC | 2 cut(s) | 1000, 1386 |
| Ple19I | CGATCG | 1 cut(s) | 1731 |
| PleI | GAGTC | 1 cut(s) | 550 |
| PpsI | GAGTC | 1 cut(s) | 550 |
| Ppu21I | YACGTR | 1 cut(s) | 557 |
| PpuMI | RGGWCCY | 1 cut(s) | 43 |
| Psp124BI | GAGCTC | 1 cut(s) | 315 |
| Psp5II | RGGWCCY | 1 cut(s) | 43 |
| PspN4I | GGNNCC | 1 cut(s) | 1038 |
| PspPI | GGNCC | 1 cut(s) | 43 |
| PspPPI | RGGWCCY | 1 cut(s) | 43 |
| PstI | CTGCAG | 3 cut(s) | 852, 1305, 1551 |
| PsuI | RGATCY | 3 cut(s) | 254, 673, 1036 |
| PvuI | CGATCG | 1 cut(s) | 1731 |
| RsaI | GTAC | 6 cut(s) | 156, 555, 618, 1284, 1814, 1853 |
| RsaNI | GTAC | 6 cut(s) | 155, 554, 617, 1283, 1813, 1852 |
| SacI | GAGCTC | 1 cut(s) | 315 |
| SalI | GTCGAC | 1 cut(s) | 1133 |
| SapI | GCTCTTC | 1 cut(s) | 303 |
| SatI | GCNGC | 2 cut(s) | 999, 1385 |
| Sau96I | GGNCC | 1 cut(s) | 43 |
| SchI | GAGTC | 1 cut(s) | 551 |
| ScrFI | CCNGG | 3 cut(s) | 1367, 1409, 1410 |
| SduI | GDGCHC | 2 cut(s) | 315, 562 |
| SfaNI | GCATC | 4 cut(s) | 844, 1543, 1723, 1795 |
| SfcI | CTRYAG | 5 cut(s) | 773, 848, 1301, 1547, 1919 |
| SinI | GGWCC | 1 cut(s) | 43 |
| SmaI | CCCGGG | 1 cut(s) | 1410 |
| SmlI | CTYRAG | 4 cut(s) | 230, 242, 284, 785 |
| SmoI | CTYRAG | 4 cut(s) | 230, 242, 284, 785 |
| SphI | GCATGC | 1 cut(s) | 1650 |
| SseBI | AGGCCT | 1 cut(s) | 176 |
| SsiI | CCGC | 4 cut(s) | 22, 27, 790, 1906 |
| SspI | AATATT | 1 cut(s) | 1490 |
| SspMI | CTAG | 5 cut(s) | 417, 701, 881, 1062, 1670 |
| SstI | GAGCTC | 1 cut(s) | 315 |
| StuI | AGGCCT | 1 cut(s) | 176 |
| StyD4I | CCNGG | 3 cut(s) | 1365, 1407, 1408 |
| StyI | CCWWGG | 1 cut(s) | 39 |
| TaaI | ACNGT | 1 cut(s) | 1592 |
| TaiI | ACGT | 1 cut(s) | 559 |
| TaqI | TCGA | 3 cut(s) | 1134, 1731, 1859 |
| TatI | WGTACW | 3 cut(s) | 1282, 1812, 1851 |
| TfiI | GAWTC | 4 cut(s) | 713, 755, 1070, 1759 |
| TscAI | CASTG | 2 cut(s) | 1022, 1815 |
| TseFI | GTSAC | 4 cut(s) | 1165, 1412, 1822, 1873 |
| TseI | GCWGC | 2 cut(s) | 998, 1384 |
| Tsp45I | GTSAC | 4 cut(s) | 1165, 1412, 1822, 1873 |
| TspGWI | ACGGA | 1 cut(s) | 1707 |
| TspMI | CCCGGG | 1 cut(s) | 1408 |
| TspRI | CASTG | 2 cut(s) | 1022, 1815 |
| Vha464I | CTTAAG | 1 cut(s) | 230 |
| VpaK11BI | GGWCC | 1 cut(s) | 43 |
| XapI | RAATTY | 6 cut(s) | 894, 1081, 1234, 1428, 1739, 1977 |
| XceI | RCATGY | 1 cut(s) | 1650 |
| XmaI | CCCGGG | 1 cut(s) | 1408 |
| XmiI | GTMKAC | 1 cut(s) | 1134 |
| XmnI | GAANNNNTTC | 3 cut(s) | 399, 898, 945 |
| XspI | CTAG | 5 cut(s) | 417, 701, 881, 1062, 1670 |