Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006925

Physical Location & Seq

Genomic Coordinates Forward (+)

73490517 .. 73495068

Gene Structure 4552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG426200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1920 bp

ATGTCTGACATATCAGAAGAAATAGATATTGGCGATCAGTCTGCGTTTTGTCACCAAGATATTGATATTGGGAAATTGCAACGAAATGTACCTCATTTATTTGGAGAGGCCTTCTCAGAGCAGGGAAAAGTCTTTTCAAACTCTGAGGTTCAAATAAATGATCTTAAGATAAAGCTTGAGCATACAAGATCTCAACAGAAAGAACTTCAGGAAAAACTTGAGAAGAGTGAAGCTCAAAAGGAAGAGCTTCGGAAAAAGATTGTGCATAGCGAGGCTCAGAACAAAGAGCTTAAGAAAACTGAAGAAGCTCAAAGGAAAGCACTTAATGAAGTACTGCTTCAGGAGAGTGAGACTAGAAACAGAACTTTGGAACAGAGTGAGAAACTTGGTAGGAAATTGAACAGATTGCTCAACCATTGTGATCTCCAGCATGAACAAATGAATGTAGTTTTGAATAAGTTAAAGAAGATGGAAGAAGAGTCGGTAGAAGTACGTGCTCTATACTCTATACTTATGCGCAAGGAGAACAATAATCATGATGAGCTGATCAATGTACGATACCATCTTGAAAAGACCTTCTTAGAAAAAGAAGCCTTTTCAAAATCCGAAGATCTAAACAATGATCTTATGAAAAGGCTAGGTGAGAGTGAATCCCAAAGAAAGGAGCTTCAAGAAAAGTATGATCGTAGTGAATCTCAGAAGAAAGAGCTACAGGAGGAGCTTGAGCGGATTGAAGCTCAGAAGATAGAGCTTCAGAAAAAGGATGATCAGAGTGAAGCCGAACTGCAGGAGGCTCATAAAGAGTTCATCAATGGACTAGGAGGTTTAAGAATTTGTTCTTTAATTGGTGTGAAGAGAATGGGAGACCTCAGCAAAGAACCATTTCAAACTTCATGCACAAGACGATATTCTTTAAAAGAAGCAGATGGCAAGGCATCAACACTATATTCTCAGTGGCAGGGCAACCTTAGGGATCCAAATTGGTATCCTTTCATAACTAGCATGGATTCTTGTGGAAATTCCAAGCTAACAATCAATGAAGACGATGAAAAATTGAAACAGATAAAGGTTGACAATCTTGGTAGTGAAGTTTACAAGGCTGTGACAACTGCTCTTGTGGAATTGAATGGCTATAATACCAATAGTAAGAGTGCAAGAACAGAATTATGGAATTTTAAAGAAGGGAGGAGGGCAACATTGAAAGAGGCAATATCGTCTGTACTGAAGCAATTGAAACTGCAGAAAAACAGGATTGGTAAAAAGTTGTCAGAACAAAAGCAACTTGATGTGAAGAAGACAAACCCGGATGAATTGGAACAGCAGCTTGATGTGAAGAAGAAAGACCCAGGTGACAGCATTAATGAAATTCAAAAGAAGTTAGAGGAGAAGGAAGATGAGTTGAGAGATTTAAAAGCTGATTTTGAATATTCAGAAGCTCTCAACTCTACACTATTTGTCAAGGAGCGGGAAAGTAATAATGAACTGCAGGATGCTCGCAAGGAGTTAATCAGGGGACTGGTGGATGACGGTTTTATTGGCGTGAAGAGAATGGGAGAACTTGACATCACGCCTTTTGCAACTGCATGCAAGAGAGACCATTCTATGCTAGAACCAGAGGTGTGGCAAGATTATCTTAGTGATCCAAGCTGGCATCCGTTTAAAGCAATCGAGGATGAATTTGGAAATCGGAAGGAAATTCTTGATGTAGAAGATGAAAAATTGAAGAGTATAAAGGGCGACGATGCAGTGTACAAGGCAGTCACAACTGCCTTGATGGAATTGAAGGAGTACAATTCGAGTGGAATGTATGTGACAGATGAACTATGGAACTTTCAAAAAGGGAGGAGGGCAACACTACAGGAGGGATTATCATATATATTATTAAACTGGAGACCTCTGAAAAGGAAAAGAAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

639

Amino Acids

74.4

Weight (kDa)

5.67

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	285 - 416	4.4e-41	XH domain
XH	PF03469	515 - 636	3.9e-36	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006925)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36270 FvH4_3g36300
rosa_chinensis	RchiOBHm_Chr5g0065081 RchiOBHm_Chr5g0065111
rosa_laevigata	RLG00000035750 RLG00000035757
rosa_multiflora	Rmu_sc0002915.1_g000011 Rmu_sc0002915.1_g000016 Rmu_sc0006219.1_g000001 Rmu_sc0006219.1_g000008
rosa_roxburghii	Rroxscaffold_1G00016210 Rroxscaffold_1G00016240
rosa_rugosa	Rorug05G0367600 Rorug05G0367900 Rorug05G0368000
rosa_samantha	Rh5AG426200 Rh5AG426400 Rh5AG426500 Rh5BG441400 Rh5BG441700 Rh5CG464100 Rh5CG464300 Rh5DG453900 Rh5DG454200
rosa_wichuraiana	Rw5G040040 Rw5G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	518
AccBSI	CCGCTC	2 cut(s)	727, 1465
AciI	CCGC	2 cut(s)	727, 1465
AclWI	GGATC	3 cut(s)	968, 981, 1634
AcsI	RAATTY	7 cut(s)	831, 1018, 1171, 1365, 1676, 1695, 1914
AcuI	CTGAAG	5 cut(s)	191, 321, 323, 737, 1244
AfaI	GTAC	7 cut(s)	90, 333, 492, 555, 1221, 1751, 1790
AfiI	CCNNNNNNNGG	1 cut(s)	661
AflII	CTTAAG	2 cut(s)	164, 290
AjnI	CCWGG	1 cut(s)	1345
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	4 cut(s)	344, 858, 1587, 1885
AlwI	GGATC	3 cut(s)	968, 981, 1634
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	1321
ApoI	RAATTY	7 cut(s)	831, 1018, 1171, 1365, 1676, 1695, 1914
AseI	ATTAAT	1 cut(s)	1359
Asp700I	GAANNNNTTC	3 cut(s)	246, 835, 882
AspLEI	GCGC	1 cut(s)	519
AsuC2I	CCSGG	1 cut(s)	1304
AsuHPI	GGTGA	3 cut(s)	44, 653, 1361
AxyI	CCTNAGG	1 cut(s)	968
BamHI	GGATCC	1 cut(s)	973
BbsI	GAAGAC	2 cut(s)	1047, 1301
Bbv12I	GWGCWC	1 cut(s)	499
BbvCI	CCTCAGC	1 cut(s)	869
BbvI	GCAGC	1 cut(s)	1333
BccI	CCATC	4 cut(s)	463, 570, 920, 1768
BcgI	CGANNNNNNTGC	4 cut(s)	23, 57, 1475, 1509
BciT130I	CCWGG	1 cut(s)	1347
BciVI	GTATCC	1 cut(s)	996
BclI	TGATCA	2 cut(s)	546, 766
BcnI	CCSGG	1 cut(s)	1304
BcoDI	GTCTC	4 cut(s)	344, 858, 1587, 1885
BfaI	CTAG	5 cut(s)	354, 638, 818, 999, 1607
BfmI	CTRYAG	5 cut(s)	710, 785, 1238, 1484, 1856
BfrI	CTTAAG	2 cut(s)	164, 290
BfuI	GTATCC	1 cut(s)	996
BglII	AGATCT	2 cut(s)	188, 610
BisI	GCNGC	1 cut(s)	1322
BlsI	GCNGC	1 cut(s)	1323
BmcAI	AGTACT	1 cut(s)	333
Bme1390I	CCNGG	2 cut(s)	1304, 1347
BmiI	GGNNCC	1 cut(s)	975
BmrFI	CCNGG	2 cut(s)	1304, 1347
BmsI	GCATC	4 cut(s)	944, 1480, 1660, 1732
BpiI	GAAGAC	2 cut(s)	1047, 1301
BplI	GAGNNNNNCTC	4 cut(s)	98, 130, 217, 249
BpmI	CTGGAG	2 cut(s)	410, 1909
Bpu10I	CCTNAGC	1 cut(s)	869
BpuEI	CTTGAG	3 cut(s)	197, 239, 743
BpuMI	CCSGG	1 cut(s)	1304
BsaAI	YACGTR	1 cut(s)	494
BsaI	GGTCTC	3 cut(s)	858, 1587, 1885
BsaJI	CCNNGG	1 cut(s)	1345
Bsc4I	CCNNNNNNNGG	1 cut(s)	661
Bse1I	ACTGG	2 cut(s)	1521, 1892
Bse21I	CCTNAGG	1 cut(s)	968
BseBI	CCWGG	1 cut(s)	1347
BseDI	CCNNGG	1 cut(s)	1345
BseGI	GGATG	6 cut(s)	769, 1312, 1495, 1528, 1651, 1678
BseLI	CCNNNNNNNGG	1 cut(s)	661
BseMII	CTCAG	7 cut(s)	129, 135, 290, 710, 752, 883, 965
BseNI	ACTGG	2 cut(s)	1521, 1892
BseRI	GAGGAG	4 cut(s)	731, 1201, 1397, 1858
BseXI	GCAGC	1 cut(s)	1333
BshFI	GGCC	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	499
BsiSI	CCGG	1 cut(s)	1304
BslFI	GGGAC	1 cut(s)	1527
BslI	CCNNNNNNNGG	1 cut(s)	661
BsmAI	GTCTC	4 cut(s)	344, 858, 1587, 1885
BsmFI	GGGAC	1 cut(s)	1527
BsnI	GGCC	1 cut(s)	110
Bso31I	GGTCTC	3 cut(s)	858, 1587, 1885
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp1407I	TGTACA	1 cut(s)	1749
BspACI	CCGC	2 cut(s)	727, 1465
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	7 cut(s)	128, 136, 289, 709, 751, 882, 964
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	1 cut(s)	975
BspMAI	CTGCAG	3 cut(s)	789, 1242, 1488
BspPI	GGATC	3 cut(s)	968, 981, 1634
BspQI	GCTCTTC	1 cut(s)	237
BspTI	CTTAAG	2 cut(s)	164, 290
BspTNI	GGTCTC	3 cut(s)	858, 1587, 1885
BsrBI	CCGCTC	2 cut(s)	727, 1465
BsrGI	TGTACA	1 cut(s)	1749
BsrI	ACTGG	2 cut(s)	1521, 1892
BssECI	CCNNGG	1 cut(s)	1345
Bst2UI	CCWGG	1 cut(s)	1347
Bst4CI	ACNGT	1 cut(s)	1529
Bst6I	CTCTTC	6 cut(s)	218, 237, 471, 848, 1538, 1718
BstAFI	CTTAAG	2 cut(s)	164, 290
BstAUI	TGTACA	1 cut(s)	1749
BstBAI	YACGTR	1 cut(s)	494
BstC8I	GCNNGC	3 cut(s)	1495, 1585, 1649
BstF5I	GGATG	6 cut(s)	769, 1312, 1495, 1528, 1651, 1678
BstHHI	GCGC	1 cut(s)	519
BstMAI	GTCTC	4 cut(s)	344, 858, 1587, 1885
BstNI	CCWGG	1 cut(s)	1347
BstNSI	RCATGY	1 cut(s)	1587
BstSCI	CCNGG	2 cut(s)	1302, 1345
BstSFI	CTRYAG	5 cut(s)	710, 785, 1238, 1484, 1856
BstV1I	GCAGC	1 cut(s)	1333
BstV2I	GAAGAC	2 cut(s)	1047, 1301
BstX2I	RGATCY	3 cut(s)	188, 610, 973
BstXI	CCANNNNNNTGG	1 cut(s)	1620
BstYI	RGATCY	3 cut(s)	188, 610, 973
Bsu36I	CCTNAGG	1 cut(s)	968
BsuI	GTATCC	1 cut(s)	996
BsuRI	GGCC	1 cut(s)	110
BtsCI	GGATG	6 cut(s)	769, 1312, 1495, 1528, 1651, 1678
BtsI	GCAGTG	1 cut(s)	1752
BtsIMutI	CAGTG	2 cut(s)	959, 1752
Cac8I	GCNNGC	3 cut(s)	1495, 1585, 1649
CciI	TCATGA	1 cut(s)	535
CfoI	GCGC	1 cut(s)	519
Csp6I	GTAC	7 cut(s)	89, 332, 491, 554, 1220, 1750, 1789
CspCI	CAANNNNNGTGG	2 cut(s)	1780, 1815
CviAII	CATG	5 cut(s)	431, 536, 894, 1003, 1584
CviQI	GTAC	7 cut(s)	89, 332, 491, 554, 1220, 1750, 1789
DraI	TTTAAA	4 cut(s)	915, 1177, 1410, 1660
Eam1104I	CTCTTC	6 cut(s)	218, 237, 471, 848, 1538, 1718
EarI	CTCTTC	6 cut(s)	218, 237, 471, 848, 1538, 1718
Eco147I	AGGCCT	1 cut(s)	110
Eco31I	GGTCTC	3 cut(s)	858, 1587, 1885
Eco57I	CTGAAG	5 cut(s)	191, 321, 323, 737, 1244
Eco81I	CCTNAGG	1 cut(s)	968
EcoRII	CCWGG	1 cut(s)	1345
FaeI	CATG	5 cut(s)	434, 539, 897, 1006, 1587
FalI	AAGNNNNNCTT	6 cut(s)	321, 353, 563, 595, 1617, 1649
FaqI	GGGAC	1 cut(s)	1527
FatI	CATG	5 cut(s)	430, 535, 893, 1002, 1583
FauI	CCCGC	1 cut(s)	1458
FbaI	TGATCA	2 cut(s)	546, 766
Fnu4HI	GCNGC	1 cut(s)	1322
FokI	GGATG	6 cut(s)	776, 1319, 1502, 1535, 1638, 1685
Fsp4HI	GCNGC	1 cut(s)	1322
FspBI	CTAG	5 cut(s)	354, 638, 818, 999, 1607
FspI	TGCGCA	1 cut(s)	518
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	1 cut(s)	1322
GsuI	CTGGAG	2 cut(s)	410, 1909
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	1 cut(s)	1304
HhaI	GCGC	1 cut(s)	519
Hin1II	CATG	5 cut(s)	434, 539, 897, 1006, 1587
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HincII	GTYRAC	1 cut(s)	1072
HindII	GTYRAC	1 cut(s)	1072
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	4 cut(s)	479, 650, 692, 1007
HpaII	CCGG	1 cut(s)	1304
HphI	GGTGA	3 cut(s)	44, 653, 1361
Hpy166II	GTNNAC	3 cut(s)	1072, 1093, 1750
Hpy188III	TCNNGA	6 cut(s)	209, 341, 536, 566, 671, 1700
Hpy8I	GTNNAC	3 cut(s)	1072, 1093, 1750
Hpy99I	CGWCG	1 cut(s)	1742
HpyAV	CCTTC	6 cut(s)	121, 586, 1175, 1381, 1684, 1777
HpyCH4III	ACNGT	1 cut(s)	1529
HpyCH4IV	ACGT	1 cut(s)	493
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	5 cut(s)	434, 539, 897, 1006, 1587
HspAI	GCGC	1 cut(s)	517
Ksp22I	TGATCA	2 cut(s)	546, 766
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	3 cut(s)	664, 718, 1462
Lsp1109I	GCAGC	1 cut(s)	1333
LweI	GCATC	4 cut(s)	944, 1480, 1660, 1732
MaeI	CTAG	5 cut(s)	354, 638, 818, 999, 1607
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	5 cut(s)	50, 1102, 1349, 1759, 1810
MbiI	CCGCTC	2 cut(s)	727, 1465
MfeI	CAATTG	1 cut(s)	1229
MflI	RGATCY	3 cut(s)	188, 610, 973
MhlI	GDGCHC	1 cut(s)	499
MlyI	GAGTC	1 cut(s)	488
MroXI	GAANNNNTTC	3 cut(s)	246, 835, 882
MspCI	CTTAAG	2 cut(s)	164, 290
MspI	CCGG	1 cut(s)	1304
MspR9I	CCNGG	2 cut(s)	1304, 1347
MunI	CAATTG	1 cut(s)	1229
MvaI	CCWGG	1 cut(s)	1347
NciI	CCSGG	1 cut(s)	1304
NlaIII	CATG	5 cut(s)	434, 539, 897, 1006, 1587
NlaIV	GGNNCC	1 cut(s)	975
NmuCI	GTSAC	5 cut(s)	50, 1102, 1349, 1759, 1810
NsbI	TGCGCA	1 cut(s)	518
NspI	RCATGY	1 cut(s)	1587
PaeI	GCATGC	1 cut(s)	1587
PagI	TCATGA	1 cut(s)	535
PceI	AGGCCT	1 cut(s)	110
PciSI	GCTCTTC	1 cut(s)	237
PdmI	GAANNNNTTC	3 cut(s)	246, 835, 882
PfeI	GAWTC	3 cut(s)	650, 692, 1007
PkrI	GCNGC	1 cut(s)	1323
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
Ppu21I	YACGTR	1 cut(s)	494
PshBI	ATTAAT	1 cut(s)	1359
Psp6I	CCWGG	1 cut(s)	1345
PspGI	CCWGG	1 cut(s)	1345
PspN4I	GGNNCC	1 cut(s)	975
PstI	CTGCAG	3 cut(s)	789, 1242, 1488
PsuI	RGATCY	3 cut(s)	188, 610, 973
RsaI	GTAC	7 cut(s)	90, 333, 492, 555, 1221, 1751, 1790
RsaNI	GTAC	7 cut(s)	89, 332, 491, 554, 1220, 1750, 1789
SapI	GCTCTTC	1 cut(s)	237
SatI	GCNGC	1 cut(s)	1322
ScaI	AGTACT	1 cut(s)	333
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	2 cut(s)	1304, 1347
SduI	GDGCHC	1 cut(s)	499
SfaNI	GCATC	4 cut(s)	944, 1480, 1660, 1732
SfcI	CTRYAG	5 cut(s)	710, 785, 1238, 1484, 1856
SmlI	CTYRAG	5 cut(s)	164, 176, 218, 290, 722
SmoI	CTYRAG	5 cut(s)	164, 176, 218, 290, 722
SphI	GCATGC	1 cut(s)	1587
SseBI	AGGCCT	1 cut(s)	110
SsiI	CCGC	2 cut(s)	727, 1465
SspI	AATATT	1 cut(s)	1427
SspMI	CTAG	5 cut(s)	354, 638, 818, 999, 1607
StuI	AGGCCT	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	1302, 1345
TaaI	ACNGT	1 cut(s)	1529
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	2 cut(s)	1668, 1796
TatI	WGTACW	4 cut(s)	331, 1219, 1749, 1788
TfiI	GAWTC	3 cut(s)	650, 692, 1007
TscAI	CASTG	2 cut(s)	959, 1752
TseFI	GTSAC	5 cut(s)	50, 1102, 1349, 1759, 1810
TseI	GCWGC	1 cut(s)	1321
Tsp45I	GTSAC	5 cut(s)	50, 1102, 1349, 1759, 1810
TspGWI	ACGGA	1 cut(s)	1644
TspRI	CASTG	2 cut(s)	959, 1752
Vha464I	CTTAAG	2 cut(s)	164, 290
VspI	ATTAAT	1 cut(s)	1359
XapI	RAATTY	7 cut(s)	831, 1018, 1171, 1365, 1676, 1695, 1914
XceI	RCATGY	1 cut(s)	1587
XmnI	GAANNNNTTC	3 cut(s)	246, 835, 882
XspI	CTAG	5 cut(s)	354, 638, 818, 999, 1607
ZrmI	AGTACT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.