Rh5DG453900

XH XS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0006925
Physical Location & Seq
Forward (+)
72427881 .. 72432531
4651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG453900.1

Sequence Viewer

Length: 1050 bp
ATGTCTGACATATCAGAAGAAATAGATATTGGCGATCAGTCTGCGTTTTGTCACCAAGATATTGATATTGTAGGGAAATTACAACGAAATGTACCTCATTTCTTTGGAGAGGCCTTCTCAGAGCAGGGAAAAGTCTTTTCAAACTCTGAGGTTCAAATAAATGATCTTAAGATAAAGCTTGAGCATACAAGATCTCAACAGAAAGAACTTCAGGAAAAACTTGAGAAGAGTGAAGCTCAAAAGGAAGAGCTTCGGAAAAAGATTGTGCATAGCGAGGCTCAGAACAAAGAGCTTAAGAAAACTGAAGAAGCTCAAAGGAAAGCACTTAATGAAGTACTGCTTCAGGAGAGTGAGACTAGAAACAGAACTTTGGAACAGAGTGAGAAGCTTGGTAGGAAATTGAACAGATTGCTGAACCATTGTGATCTCCAGCATGAACAAATGAATGTAGTTTTGAATAAGTTAAAGAAGATGGAAGAAGAGTCGGTAGAAGTACGTGCTCTATACTCTACACTTATGCGCAAGGAGAACAATAATCATGATGAGCTAATCAATGTACGATACCATCTTGAAAAGACCTTCTTAGAAAAAGAAGCCTTTTCAAAATCCGTAGATCTAAACAATGATCTTATGAAAAGGCTAGGTGAGAGTGAATCCCAAAGAAAGGAGCTTCAAGAAAAGTATGATCGTAGTGAATCTCAGAAGAAAGAGCTACAGGAGGAGCTTGAGCGGATTGAAGCTCAGAAGATAGAGCTTCAGAAAAAGGATGATCAGAGTGAAGCCGAACTGCAGGAGGCTTATAAAGAGTTCATCAATGGACTAGGAGGTTTAAGAATTTGTTCTTTAATTGGTGTGAAGAGAATGGGAGACCTCAGCAAAGAACCATTTCAAACTTCATGCACGAGACGATATTCTTTAAAAGAAGCAGATGGCAAGGCATCAACACTATATTCTCAGTGGCAGGGCAACCTTAGGGATCCAAACTGGTATCCTTTCATAACTAGCATGGATTCTTGTGGAAATTCCAAGGTATATATATGTAATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

40.81

Weight (kDa)

5.71

Isoelectric Point (pI)

57.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 286 - 339 1.5e-12 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 801
Acc16I TGCGCA 1 cut(s) 521
AccBSI CCGCTC 1 cut(s) 730
AciI CCGC 1 cut(s) 730
AclWI GGATC 2 cut(s) 971, 984
AcsI RAATTY 2 cut(s) 834, 1021
AcuI CTGAAG 4 cut(s) 194, 324, 326, 740
AfaI GTAC 4 cut(s) 93, 336, 495, 558
AfiI CCNNNNNNNGG 1 cut(s) 664
AflII CTTAAG 2 cut(s) 167, 293
AgsI TTSAA 9 cut(s) 141, 155, 403, 457, 572, 603, 674, 737, 890
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
Alw21I GWGCWC 1 cut(s) 502
Alw26I GTCTC 3 cut(s) 347, 861, 898
AlwI GGATC 2 cut(s) 971, 984
AoxI GGCC 1 cut(s) 111
ApoI RAATTY 2 cut(s) 834, 1021
Asp700I GAANNNNTTC 3 cut(s) 249, 838, 885
AspLEI GCGC 1 cut(s) 522
AsuHPI GGTGA 2 cut(s) 44, 656
AxyI CCTNAGG 1 cut(s) 971
BamHI GGATCC 1 cut(s) 976
BauI CACGAG 1 cut(s) 901
Bbv12I GWGCWC 1 cut(s) 502
BbvCI CCTCAGC 1 cut(s) 872
BccI CCATC 3 cut(s) 466, 573, 923
BcgI CGANNNNNNTGC 2 cut(s) 23, 57
BciVI GTATCC 1 cut(s) 999
BclI TGATCA 1 cut(s) 769
BcoDI GTCTC 3 cut(s) 347, 861, 898
BfaI CTAG 4 cut(s) 357, 641, 821, 1002
BfmI CTRYAG 2 cut(s) 713, 788
BfrI CTTAAG 2 cut(s) 167, 293
BfuI GTATCC 1 cut(s) 999
BglII AGATCT 2 cut(s) 191, 613
BmcAI AGTACT 1 cut(s) 336
BmiI GGNNCC 1 cut(s) 978
BmsI GCATC 1 cut(s) 947
BplI GAGNNNNNCTC 4 cut(s) 101, 133, 220, 252
BpmI CTGGAG 1 cut(s) 413
Bpu10I CCTNAGC 1 cut(s) 872
BpuEI CTTGAG 3 cut(s) 200, 242, 746
BsaAI YACGTR 1 cut(s) 497
BsaI GGTCTC 1 cut(s) 861
BsaJI CCNNGG 1 cut(s) 1026
Bsc4I CCNNNNNNNGG 1 cut(s) 664
Bse1I ACTGG 1 cut(s) 989
Bse21I CCTNAGG 1 cut(s) 971
BseDI CCNNGG 1 cut(s) 1026
BseGI GGATG 1 cut(s) 772
BseLI CCNNNNNNNGG 1 cut(s) 664
BseMII CTCAG 7 cut(s) 132, 138, 293, 713, 755, 886, 968
BseNI ACTGG 1 cut(s) 989
BseRI GAGGAG 1 cut(s) 734
BshFI GGCC 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 502
BslI CCNNNNNNNGG 1 cut(s) 664
BsmAI GTCTC 3 cut(s) 347, 861, 898
BsmBI CGTCTC 1 cut(s) 898
BsnI GGCC 1 cut(s) 113
Bso31I GGTCTC 1 cut(s) 861
Bsp1286I GDGCHC 1 cut(s) 502
Bsp143I GATC 9 cut(s) 34, 163, 191, 424, 613, 625, 685, 769, 976
BspACI CCGC 1 cut(s) 730
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 7 cut(s) 131, 139, 292, 712, 754, 885, 967
BspHI TCATGA 1 cut(s) 538
BspLI GGNNCC 1 cut(s) 978
BspMAI CTGCAG 1 cut(s) 792
BspPI GGATC 2 cut(s) 971, 984
BspQI GCTCTTC 1 cut(s) 240
BspTI CTTAAG 2 cut(s) 167, 293
BspTNI GGTCTC 1 cut(s) 861
BsrBI CCGCTC 1 cut(s) 730
BsrI ACTGG 1 cut(s) 989
BssECI CCNNGG 1 cut(s) 1026
BssMI GATC 9 cut(s) 34, 163, 191, 424, 613, 625, 685, 769, 976
BssSI CACGAG 1 cut(s) 901
BssT1I CCWWGG 1 cut(s) 1026
Bst2BI CACGAG 1 cut(s) 901
Bst6I CTCTTC 4 cut(s) 221, 240, 474, 851
BstAFI CTTAAG 2 cut(s) 167, 293
BstBAI YACGTR 1 cut(s) 497
BstDEI CTNAG 9 cut(s) 118, 147, 279, 583, 699, 741, 872, 954, 971
BstF5I GGATG 1 cut(s) 772
BstHHI GCGC 1 cut(s) 522
BstKTI GATC 9 cut(s) 37, 166, 194, 427, 616, 628, 688, 772, 979
BstMAI GTCTC 3 cut(s) 347, 861, 898
BstMBI GATC 9 cut(s) 34, 163, 191, 424, 613, 625, 685, 769, 976
BstSFI CTRYAG 2 cut(s) 713, 788
BstX2I RGATCY 3 cut(s) 191, 613, 976
BstYI RGATCY 3 cut(s) 191, 613, 976
Bsu36I CCTNAGG 1 cut(s) 971
BsuI GTATCC 1 cut(s) 999
BsuRI GGCC 1 cut(s) 113
BtsCI GGATG 1 cut(s) 772
BtsIMutI CAGTG 1 cut(s) 962
CciI TCATGA 1 cut(s) 538
CfoI GCGC 1 cut(s) 522
Csp6I GTAC 4 cut(s) 92, 335, 494, 557
CviAII CATG 4 cut(s) 434, 539, 897, 1006
CviQI GTAC 4 cut(s) 92, 335, 494, 557
DdeI CTNAG 9 cut(s) 118, 147, 279, 583, 699, 741, 872, 954, 971
DpnI GATC 9 cut(s) 36, 165, 193, 426, 615, 627, 687, 771, 978
DpnII GATC 9 cut(s) 34, 163, 191, 424, 613, 625, 685, 769, 976
DraI TTTAAA 1 cut(s) 918
Eam1104I CTCTTC 4 cut(s) 221, 240, 474, 851
EarI CTCTTC 4 cut(s) 221, 240, 474, 851
Eco130I CCWWGG 1 cut(s) 1026
Eco147I AGGCCT 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 861
Eco57I CTGAAG 4 cut(s) 194, 324, 326, 740
Eco81I CCTNAGG 1 cut(s) 971
EcoT14I CCWWGG 1 cut(s) 1026
ErhI CCWWGG 1 cut(s) 1026
Esp3I CGTCTC 1 cut(s) 898
FaeI CATG 4 cut(s) 437, 542, 900, 1009
FalI AAGNNNNNCTT 4 cut(s) 324, 356, 566, 598
FatI CATG 4 cut(s) 433, 538, 896, 1005
FbaI TGATCA 1 cut(s) 769
FokI GGATG 1 cut(s) 779
FspBI CTAG 4 cut(s) 357, 641, 821, 1002
FspI TGCGCA 1 cut(s) 521
GlaI GCGC 1 cut(s) 521
GsuI CTGGAG 1 cut(s) 413
HaeIII GGCC 1 cut(s) 113
HhaI GCGC 1 cut(s) 522
Hin1II CATG 4 cut(s) 437, 542, 900, 1009
Hin6I GCGC 1 cut(s) 520
HinP1I GCGC 1 cut(s) 520
HindIII AAGCTT 2 cut(s) 176, 386
HinfI GANTC 4 cut(s) 482, 653, 695, 1010
HphI GGTGA 2 cut(s) 44, 656
Hpy188III TCNNGA 5 cut(s) 212, 344, 539, 569, 674
HpyAV CCTTC 2 cut(s) 124, 589
HpyCH4IV ACGT 1 cut(s) 496
HpyCH4V TGCA 3 cut(s) 268, 790, 900
HpyF3I CTNAG 9 cut(s) 118, 147, 279, 583, 699, 741, 872, 954, 971
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 4 cut(s) 437, 542, 900, 1009
HspAI GCGC 1 cut(s) 520
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 9 cut(s) 34, 163, 191, 424, 613, 625, 685, 769, 976
LguI GCTCTTC 1 cut(s) 240
LmnI GCTCC 2 cut(s) 667, 721
LpnPI CCDG 8 cut(s) 110, 197, 329, 443, 701, 776, 947, 970
LweI GCATC 1 cut(s) 947
MaeI CTAG 4 cut(s) 357, 641, 821, 1002
MaeII ACGT 1 cut(s) 496
MaeIII GTNAC 1 cut(s) 50
MalI GATC 9 cut(s) 36, 165, 193, 426, 615, 627, 687, 771, 978
MbiI CCGCTC 1 cut(s) 730
MboI GATC 9 cut(s) 34, 163, 191, 424, 613, 625, 685, 769, 976
MflI RGATCY 3 cut(s) 191, 613, 976
MhlI GDGCHC 1 cut(s) 502
MluCI AATT 6 cut(s) 77, 398, 834, 846, 1021, 1042
MlyI GAGTC 1 cut(s) 491
MnlI CCTC 8 cut(s) 103, 105, 142, 268, 712, 787, 818, 881
MroXI GAANNNNTTC 3 cut(s) 249, 838, 885
MseI TTAA 7 cut(s) 168, 294, 327, 464, 830, 845, 917
MspCI CTTAAG 2 cut(s) 167, 293
NdeII GATC 9 cut(s) 34, 163, 191, 424, 613, 625, 685, 769, 976
NlaIII CATG 4 cut(s) 437, 542, 900, 1009
NlaIV GGNNCC 1 cut(s) 978
NmuCI GTSAC 1 cut(s) 50
NsbI TGCGCA 1 cut(s) 521
PagI TCATGA 1 cut(s) 538
PceI AGGCCT 1 cut(s) 113
PciSI GCTCTTC 1 cut(s) 240
PdmI GAANNNNTTC 3 cut(s) 249, 838, 885
PfeI GAWTC 3 cut(s) 653, 695, 1010
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
Ppu21I YACGTR 1 cut(s) 497
PsiI TTATAA 1 cut(s) 801
PspN4I GGNNCC 1 cut(s) 978
PstI CTGCAG 1 cut(s) 792
PsuI RGATCY 3 cut(s) 191, 613, 976
RsaI GTAC 4 cut(s) 93, 336, 495, 558
RsaNI GTAC 4 cut(s) 92, 335, 494, 557
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 7 cut(s) 168, 294, 327, 464, 830, 845, 917
Sau3AI GATC 9 cut(s) 34, 163, 191, 424, 613, 625, 685, 769, 976
ScaI AGTACT 1 cut(s) 336
SchI GAGTC 1 cut(s) 491
SduI GDGCHC 1 cut(s) 502
SfaNI GCATC 1 cut(s) 947
SfcI CTRYAG 2 cut(s) 713, 788
SmlI CTYRAG 5 cut(s) 167, 179, 221, 293, 725
SmoI CTYRAG 5 cut(s) 167, 179, 221, 293, 725
Sse9I AATT 6 cut(s) 77, 398, 834, 846, 1021, 1042
SseBI AGGCCT 1 cut(s) 113
SsiI CCGC 1 cut(s) 730
SspMI CTAG 4 cut(s) 357, 641, 821, 1002
StuI AGGCCT 1 cut(s) 113
StyI CCWWGG 1 cut(s) 1026
TaiI ACGT 1 cut(s) 499
TasI AATT 6 cut(s) 77, 398, 834, 846, 1021, 1042
TatI WGTACW 1 cut(s) 334
TfiI GAWTC 3 cut(s) 653, 695, 1010
Tru1I TTAA 7 cut(s) 168, 294, 327, 464, 830, 845, 917
Tru9I TTAA 7 cut(s) 168, 294, 327, 464, 830, 845, 917
TscAI CASTG 1 cut(s) 962
TseFI GTSAC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 7 cut(s) 345, 450, 458, 647, 799, 885, 985
TspGWI ACGGA 1 cut(s) 598
TspRI CASTG 1 cut(s) 962
Vha464I CTTAAG 2 cut(s) 167, 293
XapI RAATTY 2 cut(s) 834, 1021
XmnI GAANNNNTTC 3 cut(s) 249, 838, 885
XspI CTAG 4 cut(s) 357, 641, 821, 1002
ZrmI AGTACT 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.