Rw5G040060

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0006925
Physical Location & Seq
Forward (+)
70769101 .. 70772797
3697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G040060.1

Sequence Viewer

Length: 1905 bp
ATGGATATAGGAAAATTGCAACAAAATGTACGTCATCTGACTCATGTCTTTGAAGAGGCCTTCTTAGAGCAGAGAAGAGTCTTTTCAAAATCCAAAGCTCAAATAGATGAACTTAAGAAAAAGCTTGAGCAGACAAGATGCCAACAGAAAGAGCTCGAGGAAAAACTTGAGAAGAGTGAAGCTCAAAATGAAGATCTTCAGAAGAAGCATGATCACAGTGAAGCTCAGAGGAAAGAACTTATGAAAAGGCATGAAATGAGTGAAGCTAATATGAAAGAGCTCCGGAAAAAGATTGTGCATAGTGAAGCTGATATGAAAGCGCTTCTGAAAAAGCTTGAGTATATTGAGGCTCAGAAAAAAGAGCATGAGAAAACTGAAAAAGCTCAAAAGGAAGAACTTGCTAAAAAATTGCTTCAGCAGAGTCTCATTCAAAAAAAGAAATTGCAACTTATGTTCAGCTTGGATGATAATAAGGCTATTAAAGAGCTATTCGAGGAAAAGAAAAAGAATGAGAAGCTTGATGGGGAATTGAATGAGTTGCGCAACCATCATAATCTCCTGCTTGAACTAAAGGATGCTGTTCTGAATAAGTTAAAGAAGAAGGAAGAAGAGTTGATCAATGTACGTTACCTTCTTGAACAGACCTTCTTGGAGAAAGAAGCCTTTTTAAAATCTGAAGCTCTAAAGAATGATCTTAAGAAAATGCTAGGTGAGAGTGAATCTGAAAGAAATGAACTTCAAAAAAAGCATGATCATTGTGAAGCTCAGAAGAAAGATCTTCTGAAAAAGGATGATCAGAGTGAAGCCGAACTACAGGAGGCTCGTCAAGAGTTCATCAATGGACTAGGGGGATTAAACTTCTGTACTACAATTGGCGTGAAGAGAATGGGAGAGCTTGACAACAAACCATTTCAAACTTCATGCAAGAGACAATATTCTAAAAAAGAAGCTGATGACAAGGCAGCAACACTATATTCTCAGTGGGAAGGCTACCTCAGGGATCCAAATTGGTATCCATTCACAACTAGCATGGATTCTTGTGGAAATTCTAAGCTGACTATCAACGAAGAAGATGAAAAATTGAAACAGTTAAAGGTCTGCAATCTTGATATCGAAGTATACAAGGCTGTGACAACTGCCTTGGTGGAATTGAATAGCTATAATACCAATGGTAGGACTCCAATAGCAGAATTATGGAATTTTAAAGAAGGGAGGAAGGCAACAGTGAAAGAGGGAATATCGTATGTACTGAACCAATTGAAACTGCTGAGAAAGAGGGTTGGTAAAATGCTGTCAGAACAAAAGCAGCTTGATATGAAGAAGAAAAAACCGGATGATGGGACTAATGAAATTCAAAAGAAGTTAGAGGAGAAGGAAGCTGAGTTGAAAGATTTAAAAGCTGAGTTAGAATATTCAGAAGAGCTCAACTCTACGCTATTTGTCAAGGAGCGTGAAAGTAACGATGAACTGCAGGATGCTCGCAAGGAGTTGATCAGGGAACTGGTGGATGGCGGTTTTATTGGCGTGAAGAGAATGGGAGAGCTTGACATCACCCCTTTTGCAACCGCATGCAAGAGAGATAATTCTATGCTAGAACCAGAGGTGTGGCAGGATTGTATTAGTGATCCAAGCTGGTATCCTTTTAAACCGATCGAGGATAAATTTGGAAATCGGAAGGAAATTCTTGATGTAGAAGATGAAAAATTGAAGTGTATAAAGGGCAACGATGGAGTGTACAAGGCAGTCACAACTGCCTTGATGGAACTGAAGGAGTACAATTCGAGTGGTATGTATGTAACAGAAGAACTATGGAACTTTCAAAAAGGGAGGAGGGCAACACTACAAGAGGGATTATCATATATACTATTGAACTGGAGACCTCTGAAAAGGAAAAGAAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XH XS zf-XS

Protein Analysis

634

Amino Acids

74.4

Weight (kDa)

7.84

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 294 - 425 7.9e-45 XH domain
XH PF03469 510 - 631 5.9e-34 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 542
AccI GTMKAC 1 cut(s) 1119
AccIII TCCGGA 1 cut(s) 282
AciI CCGC 2 cut(s) 1512, 1566
AclWI GGATC 3 cut(s) 995, 1008, 1619
AcsI RAATTY 6 cut(s) 1045, 1198, 1350, 1661, 1680, 1899
AcuI CTGAAG 4 cut(s) 182, 398, 696, 1787
AfaI GTAC 6 cut(s) 30, 624, 865, 1248, 1736, 1775
AfeI AGCGCT 1 cut(s) 321
AfiI CCNNNNNNNGG 2 cut(s) 1173, 1337
AflII CTTAAG 2 cut(s) 113, 695
Alw21I GWGCWC 3 cut(s) 156, 282, 1425
Alw26I GTCTC 3 cut(s) 428, 922, 1870
AlwI GGATC 3 cut(s) 995, 1008, 1619
Ama87I CYCGRG 1 cut(s) 155
Aor13HI TCCGGA 1 cut(s) 282
Aor51HI AGCGCT 1 cut(s) 321
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 2 cut(s) 962, 1306
ApoI RAATTY 6 cut(s) 1045, 1198, 1350, 1661, 1680, 1899
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
Asp700I GAANNNNTTC 1 cut(s) 195
AspLEI GCGC 2 cut(s) 322, 543
AsuHPI GGTGA 2 cut(s) 722, 1543
AvaI CYCGRG 1 cut(s) 155
AxyI CCTNAGG 1 cut(s) 995
BamHI GGATCC 1 cut(s) 1000
BanII GRGCYC 3 cut(s) 156, 282, 1425
BarI GAAGNNNNNNTAC 4 cut(s) 615, 647, 795, 827
Bbv12I GWGCWC 3 cut(s) 156, 282, 1425
BbvI GCAGC 2 cut(s) 974, 1318
BccI CCATC 6 cut(s) 515, 555, 1331, 1502, 1721, 1753
BcgI CGANNNNNNTGC 2 cut(s) 1460, 1494
BciVI GTATCC 2 cut(s) 1023, 1647
BclI TGATCA 5 cut(s) 211, 615, 751, 793, 1491
BcoDI GTCTC 3 cut(s) 428, 922, 1870
BfaI CTAG 4 cut(s) 707, 845, 1026, 1592
BfmI CTRYAG 2 cut(s) 812, 1469
BfoI RGCGCY 1 cut(s) 323
BfrI CTTAAG 2 cut(s) 113, 695
BfuI GTATCC 2 cut(s) 1023, 1647
BglII AGATCT 2 cut(s) 193, 775
BisI GCNGC 2 cut(s) 963, 1307
BlsI GCNGC 2 cut(s) 964, 1308
BmeT110I CYCGRG 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 1002
BmsI GCATC 3 cut(s) 128, 565, 1465
BoxI GACNNNNGTC 1 cut(s) 44
BplI GAGNNNNNCTC 4 cut(s) 166, 198, 1412, 1444
BpmI CTGGAG 1 cut(s) 1894
BpuEI CTTGAG 3 cut(s) 146, 188, 356
BsaI GGTCTC 1 cut(s) 1870
BsaJI CCNNGG 1 cut(s) 1140
BsaWI WCCGGW 2 cut(s) 282, 1330
Bsc4I CCNNNNNNNGG 2 cut(s) 1173, 1337
Bse1I ACTGG 2 cut(s) 1506, 1877
Bse21I CCTNAGG 1 cut(s) 995
BseAI TCCGGA 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 1140
BseGI GGATG 6 cut(s) 469, 580, 796, 1339, 1480, 1513
BseLI CCNNNNNNNGG 2 cut(s) 1173, 1337
BseMII CTCAG 8 cut(s) 239, 365, 779, 992, 1009, 1259, 1371, 1392
BseNI ACTGG 2 cut(s) 1506, 1877
BseRI GAGGAG 2 cut(s) 1382, 1843
BseXI GCAGC 2 cut(s) 974, 1318
Bsh1285I CGRYCG 1 cut(s) 1653
BshFI GGCC 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 1653
BsiHKAI GWGCWC 3 cut(s) 156, 282, 1425
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 2 cut(s) 283, 1331
BslFI GGGAC 1 cut(s) 1354
BslI CCNNNNNNNGG 2 cut(s) 1173, 1337
BsmAI GTCTC 3 cut(s) 428, 922, 1870
BsmFI GGGAC 1 cut(s) 1354
BsnI GGCC 1 cut(s) 59
Bso31I GGTCTC 1 cut(s) 1870
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 3 cut(s) 156, 282, 1425
Bsp13I TCCGGA 1 cut(s) 282
Bsp1407I TGTACA 1 cut(s) 1734
BspACI CCGC 2 cut(s) 1512, 1566
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 8 cut(s) 238, 364, 778, 991, 1008, 1260, 1372, 1393
BspEI TCCGGA 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 1002
BspMAI CTGCAG 1 cut(s) 1473
BspPI GGATC 3 cut(s) 995, 1008, 1619
BspQI GCTCTTC 1 cut(s) 1413
BspTI CTTAAG 2 cut(s) 113, 695
BspTNI GGTCTC 1 cut(s) 1870
BsrGI TGTACA 1 cut(s) 1734
BsrI ACTGG 2 cut(s) 1506, 1877
BssECI CCNNGG 1 cut(s) 1140
BssNAI GTATAC 1 cut(s) 1120
BssT1I CCWWGG 1 cut(s) 1140
Bst1107I GTATAC 1 cut(s) 1120
Bst4CI ACNGT 3 cut(s) 218, 1089, 1225
Bst6I CTCTTC 7 cut(s) 48, 70, 167, 603, 875, 1413, 1523
BstAFI CTTAAG 2 cut(s) 113, 695
BstAUI TGTACA 1 cut(s) 1734
BstC8I GCNNGC 2 cut(s) 1480, 1570
BstF5I GGATG 6 cut(s) 469, 580, 796, 1339, 1480, 1513
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 2 cut(s) 322, 543
BstMAI GTCTC 3 cut(s) 428, 922, 1870
BstMCI CGRYCG 1 cut(s) 1653
BstNSI RCATGY 1 cut(s) 1572
BstPAI GACNNNNGTC 1 cut(s) 44
BstSFI CTRYAG 2 cut(s) 812, 1469
BstV1I GCAGC 2 cut(s) 974, 1318
BstX2I RGATCY 3 cut(s) 193, 775, 1000
BstXI CCANNNNNNTGG 1 cut(s) 1605
BstYI RGATCY 3 cut(s) 193, 775, 1000
BstZ17I GTATAC 1 cut(s) 1120
Bsu36I CCTNAGG 1 cut(s) 995
BsuI GTATCC 2 cut(s) 1023, 1647
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 6 cut(s) 469, 580, 796, 1339, 1480, 1513
BtsIMutI CAGTG 3 cut(s) 223, 986, 1230
Cac8I GCNNGC 2 cut(s) 1480, 1570
CfoI GCGC 2 cut(s) 322, 543
Csp6I GTAC 6 cut(s) 29, 623, 864, 1247, 1735, 1774
CspCI CAANNNNNGTGG 2 cut(s) 1765, 1800
CviAII CATG 8 cut(s) 44, 209, 251, 365, 749, 921, 1030, 1569
CviQI GTAC 6 cut(s) 29, 623, 864, 1247, 1735, 1774
DraI TTTAAA 4 cut(s) 669, 1204, 1395, 1645
Eam1104I CTCTTC 7 cut(s) 48, 70, 167, 603, 875, 1413, 1523
EarI CTCTTC 7 cut(s) 48, 70, 167, 603, 875, 1413, 1523
Ecl136II GAGCTC 3 cut(s) 154, 280, 1423
Eco130I CCWWGG 1 cut(s) 1140
Eco147I AGGCCT 1 cut(s) 59
Eco24I GRGCYC 3 cut(s) 156, 282, 1425
Eco31I GGTCTC 1 cut(s) 1870
Eco32I GATATC 1 cut(s) 1111
Eco47III AGCGCT 1 cut(s) 321
Eco53kI GAGCTC 3 cut(s) 154, 280, 1423
Eco57I CTGAAG 4 cut(s) 182, 398, 696, 1787
Eco81I CCTNAGG 1 cut(s) 995
Eco88I CYCGRG 1 cut(s) 155
EcoICRI GAGCTC 3 cut(s) 154, 280, 1423
EcoRV GATATC 1 cut(s) 1111
EcoT14I CCWWGG 1 cut(s) 1140
EcoT38I GRGCYC 3 cut(s) 156, 282, 1425
ErhI CCWWGG 1 cut(s) 1140
FaeI CATG 8 cut(s) 47, 212, 254, 368, 752, 924, 1033, 1572
FaqI GGGAC 1 cut(s) 1354
FatI CATG 8 cut(s) 43, 208, 250, 364, 748, 920, 1029, 1568
FbaI TGATCA 5 cut(s) 211, 615, 751, 793, 1491
FblI GTMKAC 1 cut(s) 1119
Fnu4HI GCNGC 2 cut(s) 963, 1307
FokI GGATG 6 cut(s) 476, 587, 803, 1346, 1487, 1520
FriOI GRGCYC 3 cut(s) 156, 282, 1425
Fsp4HI GCNGC 2 cut(s) 963, 1307
FspBI CTAG 4 cut(s) 707, 845, 1026, 1592
FspI TGCGCA 1 cut(s) 542
GlaI GCGC 2 cut(s) 321, 542
GluI GCNGC 2 cut(s) 963, 1307
GsuI CTGGAG 1 cut(s) 1894
HaeII RGCGCY 1 cut(s) 323
HaeIII GGCC 1 cut(s) 59
HapII CCGG 2 cut(s) 283, 1331
HhaI GCGC 2 cut(s) 322, 543
Hin1II CATG 8 cut(s) 47, 212, 254, 368, 752, 924, 1033, 1572
Hin6I GCGC 2 cut(s) 320, 541
HinP1I GCGC 2 cut(s) 320, 541
HindIII AAGCTT 3 cut(s) 122, 332, 515
HinfI GANTC 6 cut(s) 40, 78, 421, 719, 1034, 1177
HpaII CCGG 2 cut(s) 283, 1331
HphI GGTGA 2 cut(s) 722, 1543
Hpy166II GTNNAC 2 cut(s) 1120, 1735
Hpy188III TCNNGA 5 cut(s) 283, 635, 827, 1106, 1685
Hpy8I GTNNAC 2 cut(s) 1120, 1735
HpyCH4III ACNGT 3 cut(s) 218, 1089, 1225
HpyCH4IV ACGT 2 cut(s) 31, 625
HpyCH4V TGCA 8 cut(s) 19, 298, 445, 924, 1101, 1471, 1562, 1572
HpySE526I ACGT 2 cut(s) 31, 625
Hsp92II CATG 8 cut(s) 47, 212, 254, 368, 752, 924, 1033, 1572
HspAI GCGC 2 cut(s) 320, 541
Kpn2I TCCGGA 1 cut(s) 282
Ksp22I TGATCA 5 cut(s) 211, 615, 751, 793, 1491
LguI GCTCTTC 1 cut(s) 1413
LmnI GCTCC 2 cut(s) 285, 1447
Lsp1109I GCAGC 2 cut(s) 974, 1318
LweI GCATC 3 cut(s) 128, 565, 1465
MaeI CTAG 4 cut(s) 707, 845, 1026, 1592
MaeII ACGT 2 cut(s) 31, 625
MaeIII GTNAC 5 cut(s) 626, 1129, 1457, 1744, 1795
MfeI CAATTG 2 cut(s) 870, 1256
MflI RGATCY 3 cut(s) 193, 775, 1000
MhlI GDGCHC 3 cut(s) 156, 282, 1425
MlyI GAGTC 4 cut(s) 34, 87, 430, 1171
MroI TCCGGA 1 cut(s) 282
MroXI GAANNNNTTC 1 cut(s) 195
MspCI CTTAAG 2 cut(s) 113, 695
MspI CCGG 2 cut(s) 283, 1331
MunI CAATTG 2 cut(s) 870, 1256
NlaIII CATG 8 cut(s) 47, 212, 254, 368, 752, 924, 1033, 1572
NlaIV GGNNCC 1 cut(s) 1002
NmuCI GTSAC 2 cut(s) 1129, 1744
NsbI TGCGCA 1 cut(s) 542
NspI RCATGY 1 cut(s) 1572
PaeI GCATGC 1 cut(s) 1572
PaeR7I CTCGAG 1 cut(s) 155
PceI AGGCCT 1 cut(s) 59
PciSI GCTCTTC 1 cut(s) 1413
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 2 cut(s) 719, 1034
PkrI GCNGC 2 cut(s) 964, 1308
Ple19I CGATCG 1 cut(s) 1653
PleI GAGTC 4 cut(s) 34, 86, 429, 1171
PpsI GAGTC 4 cut(s) 34, 86, 429, 1171
PshAI GACNNNNGTC 1 cut(s) 44
Psp124BI GAGCTC 3 cut(s) 156, 282, 1425
PspN4I GGNNCC 1 cut(s) 1002
PspXI VCTCGAGB 1 cut(s) 155
PstI CTGCAG 1 cut(s) 1473
PsuI RGATCY 3 cut(s) 193, 775, 1000
PvuI CGATCG 1 cut(s) 1653
RsaI GTAC 6 cut(s) 30, 624, 865, 1248, 1736, 1775
RsaNI GTAC 6 cut(s) 29, 623, 864, 1247, 1735, 1774
SacI GAGCTC 3 cut(s) 156, 282, 1425
SapI GCTCTTC 1 cut(s) 1413
SatI GCNGC 2 cut(s) 963, 1307
SchI GAGTC 4 cut(s) 34, 87, 430, 1171
SduI GDGCHC 3 cut(s) 156, 282, 1425
SfaNI GCATC 3 cut(s) 128, 565, 1465
SfcI CTRYAG 2 cut(s) 812, 1469
Sfr274I CTCGAG 1 cut(s) 155
SlaI CTCGAG 1 cut(s) 155
SmlI CTYRAG 6 cut(s) 113, 125, 155, 167, 335, 695
SmoI CTYRAG 6 cut(s) 113, 125, 155, 167, 335, 695
SphI GCATGC 1 cut(s) 1572
SseBI AGGCCT 1 cut(s) 59
SsiI CCGC 2 cut(s) 1512, 1566
SspI AATATT 2 cut(s) 935, 1412
SspMI CTAG 4 cut(s) 707, 845, 1026, 1592
SstI GAGCTC 3 cut(s) 156, 282, 1425
StuI AGGCCT 1 cut(s) 59
StyI CCWWGG 1 cut(s) 1140
TaaI ACNGT 3 cut(s) 218, 1089, 1225
TaiI ACGT 2 cut(s) 34, 628
TaqI TCGA 5 cut(s) 156, 492, 1113, 1653, 1781
TatI WGTACW 4 cut(s) 863, 1246, 1734, 1773
TfiI GAWTC 2 cut(s) 719, 1034
TscAI CASTG 3 cut(s) 223, 986, 1230
TseFI GTSAC 2 cut(s) 1129, 1744
TseI GCWGC 2 cut(s) 962, 1306
Tsp45I GTSAC 2 cut(s) 1129, 1744
TspRI CASTG 3 cut(s) 223, 986, 1230
Vha464I CTTAAG 2 cut(s) 113, 695
XapI RAATTY 6 cut(s) 1045, 1198, 1350, 1661, 1680, 1899
XceI RCATGY 1 cut(s) 1572
XhoI CTCGAG 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 1119
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 4 cut(s) 707, 845, 1026, 1592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.