Rh5AG426500

XH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0006925
Physical Location & Seq
Forward (+)
73557195 .. 73560562
3368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG426500.1

Sequence Viewer

Length: 1665 bp
ATGAAAAGGGATGAAATGAGTGAAGCTAATATGAAAGAGCTGCGGAAAAAGATTGTGCATAGTGAAGCTGATATGAAAGCGCTTCTGAAAAAGCTCGAGTATATTGAGGCTCAGAAAAAAGAGCATGAGAAAACTGAAAAAGCTCAAAAGGAAGAACTTGCTAAAAAATTGCTTCAGCAGAGTCTCACTCAAAAAAAGAAATTGCAACTTATGTTCAGCTTGGATGATAATAAGGCTATTAAAGAGCTATTCGAGGAAAAGAAAAAGAATGAGAAGCTTGATGGGGAATTGTATGAGTTGCGCAACCATCATAATCTCCTGCTTGAACTAAAGGATGCTGTTCTGAATAAGTTAAAAAAGAAGGAAGAAGAGTTGATCAATGTACGTTACCTTCTTGAACAGACCTTCTTGGAGAAAGAAGCCTTTTTAAAATCTGAAGCTCTAAAGAATGATCTTAAGAAAATGCTAGGGGAGAGTGAATCTGAAAGAAATGAACTTCAAAAAAAGCATGATCATTGTGAAGCTCAGAAGAAAGATCTTCTGAAAAAGGATGATCAGAGTGAAGCCGAACTTCAGGAGGCTCGTCAAGAGTTCATCAATGGACTAGGGGGATTAAACTTCTGTACTACAATTGGCGTGAAGAGAATGGGAGAGCTTGACAACAAACCATTTCAAACTTCATGCAAGAGACAATATTCTAAAAAAGAAGCAGATGACAAGGCAGCAACACTATATTCTCAGTGGGAGGGCTACCTCAGGGATCCAAATTGGTTTCCATTCACAACTAGCATGGATTCTTGTGGAAATTCTAAGCTGACTATCAACGAAGAAGATGAAAAATTGAAACAGTTAAAGGTCTGCAATCTTGATATCAAAGTATACAAGGCTGTGACAACTGCCTTGGTGGAATTGAATAGCTATAATACCAATGGTAGGACTCCAATAGCAGAATTATGGAATTTTAAAGAAGGGAGGAAGGCAACAGTGAAAGAGGGAATATCGTATGTACTGAACCAATTGAAACTGCTGAGAAAGAGGGTTGGTAAAATGCTGTCAGAACAAAAGCAGCTTGATATGAAGAAGAAAAAACCGGATGATGGGACTAAGGAAATTCAAAAGAAGTTAGAGGAGAAGGAAGCTGAGTTGAAAGATTTAAAAGCTGAGTTAGAATATTCAGAAGAGCTCAACTCTACACTATTTGTCAAGGAGCGTGAAAGTAACGATGAACTGCAGGATGCTCGCAAGGAGTTAATCAGGGAACTGGTGGATGGCGGTTTTATTGGCGTGAAGAGAATGGGAGAGCTTGACATCACCCCTTTTGCAACGGCATGCAAGAGAGATAATTCTATGCTAGAACCAGAGGTGTGGCAGGATTGTATTAGTGATCCAAGCTGGTATCCTTTTAAACCGATCGAGGATGAATTTGGAAATCGGAAGGAAATTCTTGATGTAGAAGATGAAAAATTGAAGTGCATAAAGGGCAACGATGGAGTGTACAAGGCAGTCACAACTGCCTTGATGGAACTGAAGGAGTACAATTCGAGTGGTATGTATGTAACAGAAGAACTATGGAACTTTCAAAAAGGGAGGAGGGCAACACTACAAGAGGGATTATCATATATACTATTGAACTGGAGACCTCTGAAAAGGAAAAGAAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XH XS zf-XS

Protein Analysis

554

Amino Acids

64.78

Weight (kDa)

7.86

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 214 - 345 2e-44 XH domain
XH PF03469 430 - 551 4.9e-34 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 302
AccI GTMKAC 1 cut(s) 879
AciI CCGC 2 cut(s) 43, 1272
AclWI GGATC 3 cut(s) 755, 768, 1379
AcsI RAATTY 6 cut(s) 805, 958, 1110, 1421, 1440, 1659
AcuI CTGAAG 4 cut(s) 158, 456, 557, 1547
AfaI GTAC 5 cut(s) 384, 625, 1008, 1496, 1535
AfeI AGCGCT 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 933, 1097
AflII CTTAAG 1 cut(s) 455
Alw21I GWGCWC 1 cut(s) 1185
Alw26I GTCTC 3 cut(s) 188, 682, 1630
AlwI GGATC 3 cut(s) 755, 768, 1379
Ama87I CYCGRG 1 cut(s) 95
Aor51HI AGCGCT 1 cut(s) 81
ApeKI GCWGC 3 cut(s) 40, 722, 1066
ApoI RAATTY 6 cut(s) 805, 958, 1110, 1421, 1440, 1659
AspLEI GCGC 2 cut(s) 82, 303
AsuHPI GGTGA 1 cut(s) 1303
AvaI CYCGRG 1 cut(s) 95
AxyI CCTNAGG 1 cut(s) 755
BamHI GGATCC 1 cut(s) 760
BanII GRGCYC 1 cut(s) 1185
BarI GAAGNNNNNNTAC 2 cut(s) 375, 407
Bbv12I GWGCWC 1 cut(s) 1185
BbvI GCAGC 3 cut(s) 27, 734, 1078
BccI CCATC 6 cut(s) 275, 315, 1091, 1262, 1481, 1513
BceAI ACGGC 1 cut(s) 1341
BcgI CGANNNNNNTGC 2 cut(s) 1220, 1254
BciVI GTATCC 1 cut(s) 1407
BclI TGATCA 3 cut(s) 375, 511, 553
BcoDI GTCTC 3 cut(s) 188, 682, 1630
BfaI CTAG 4 cut(s) 467, 605, 786, 1352
BfmI CTRYAG 1 cut(s) 1229
BfoI RGCGCY 1 cut(s) 83
BfrI CTTAAG 1 cut(s) 455
BfuI GTATCC 1 cut(s) 1407
BglII AGATCT 1 cut(s) 535
BisI GCNGC 3 cut(s) 41, 723, 1067
BlsI GCNGC 3 cut(s) 42, 724, 1068
BmeT110I CYCGRG 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 762
BmsI GCATC 2 cut(s) 325, 1225
BplI GAGNNNNNCTC 4 cut(s) 172, 204, 1172, 1204
BpmI CTGGAG 1 cut(s) 1654
BsaI GGTCTC 1 cut(s) 1630
BsaJI CCNNGG 1 cut(s) 900
BsaWI WCCGGW 1 cut(s) 1090
Bsc4I CCNNNNNNNGG 2 cut(s) 933, 1097
Bse1I ACTGG 2 cut(s) 1266, 1637
Bse21I CCTNAGG 1 cut(s) 755
BseDI CCNNGG 1 cut(s) 900
BseGI GGATG 8 cut(s) 16, 229, 340, 556, 1099, 1240, 1273, 1423
BseLI CCNNNNNNNGG 2 cut(s) 933, 1097
BseMII CTCAG 7 cut(s) 125, 539, 752, 769, 1019, 1131, 1152
BseNI ACTGG 2 cut(s) 1266, 1637
BseRI GAGGAG 2 cut(s) 1142, 1603
BseXI GCAGC 3 cut(s) 27, 734, 1078
Bsh1285I CGRYCG 1 cut(s) 1413
BsiEI CGRYCG 1 cut(s) 1413
BsiHKAI GWGCWC 1 cut(s) 1185
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 1091
BslFI GGGAC 1 cut(s) 1114
BslI CCNNNNNNNGG 2 cut(s) 933, 1097
BsmAI GTCTC 3 cut(s) 188, 682, 1630
BsmFI GGGAC 1 cut(s) 1114
Bso31I GGTCTC 1 cut(s) 1630
BsoBI CYCGRG 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 1185
Bsp1407I TGTACA 1 cut(s) 1494
Bsp143I GATC 8 cut(s) 375, 451, 511, 535, 553, 760, 1384, 1410
BspACI CCGC 2 cut(s) 43, 1272
BspCNI CTCAG 7 cut(s) 124, 538, 751, 768, 1020, 1132, 1153
BspLI GGNNCC 1 cut(s) 762
BspMAI CTGCAG 1 cut(s) 1233
BspPI GGATC 3 cut(s) 755, 768, 1379
BspQI GCTCTTC 1 cut(s) 1173
BspTI CTTAAG 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 1630
BsrGI TGTACA 1 cut(s) 1494
BsrI ACTGG 2 cut(s) 1266, 1637
BssECI CCNNGG 1 cut(s) 900
BssMI GATC 8 cut(s) 375, 451, 511, 535, 553, 760, 1384, 1410
BssNAI GTATAC 1 cut(s) 880
BssT1I CCWWGG 1 cut(s) 900
Bst1107I GTATAC 1 cut(s) 880
Bst4CI ACNGT 2 cut(s) 849, 985
Bst6I CTCTTC 4 cut(s) 363, 635, 1173, 1283
BstAFI CTTAAG 1 cut(s) 455
BstAUI TGTACA 1 cut(s) 1494
BstC8I GCNNGC 2 cut(s) 1240, 1330
BstDEI CTNAG 9 cut(s) 111, 525, 738, 755, 810, 1028, 1104, 1140, 1161
BstF5I GGATG 8 cut(s) 16, 229, 340, 556, 1099, 1240, 1273, 1423
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 2 cut(s) 82, 303
BstKTI GATC 8 cut(s) 378, 454, 514, 538, 556, 763, 1387, 1413
BstMAI GTCTC 3 cut(s) 188, 682, 1630
BstMBI GATC 8 cut(s) 375, 451, 511, 535, 553, 760, 1384, 1410
BstMCI CGRYCG 1 cut(s) 1413
BstMWI GCNNNNNNNGC 1 cut(s) 1479
BstNSI RCATGY 1 cut(s) 1332
BstSFI CTRYAG 1 cut(s) 1229
BstV1I GCAGC 3 cut(s) 27, 734, 1078
BstX2I RGATCY 2 cut(s) 535, 760
BstXI CCANNNNNNTGG 1 cut(s) 1365
BstYI RGATCY 2 cut(s) 535, 760
BstZ17I GTATAC 1 cut(s) 880
Bsu36I CCTNAGG 1 cut(s) 755
BsuI GTATCC 1 cut(s) 1407
BtsCI GGATG 8 cut(s) 16, 229, 340, 556, 1099, 1240, 1273, 1423
BtsIMutI CAGTG 2 cut(s) 746, 990
Cac8I GCNNGC 2 cut(s) 1240, 1330
CfoI GCGC 2 cut(s) 82, 303
Csp6I GTAC 5 cut(s) 383, 624, 1007, 1495, 1534
CspCI CAANNNNNGTGG 2 cut(s) 1525, 1560
CviAII CATG 5 cut(s) 125, 509, 681, 790, 1329
CviQI GTAC 5 cut(s) 383, 624, 1007, 1495, 1534
DdeI CTNAG 9 cut(s) 111, 525, 738, 755, 810, 1028, 1104, 1140, 1161
DpnI GATC 8 cut(s) 377, 453, 513, 537, 555, 762, 1386, 1412
DpnII GATC 8 cut(s) 375, 451, 511, 535, 553, 760, 1384, 1410
DraI TTTAAA 4 cut(s) 429, 964, 1155, 1405
Eam1104I CTCTTC 4 cut(s) 363, 635, 1173, 1283
EarI CTCTTC 4 cut(s) 363, 635, 1173, 1283
Ecl136II GAGCTC 1 cut(s) 1183
Eco130I CCWWGG 1 cut(s) 900
Eco24I GRGCYC 1 cut(s) 1185
Eco31I GGTCTC 1 cut(s) 1630
Eco32I GATATC 1 cut(s) 871
Eco47III AGCGCT 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 1183
Eco57I CTGAAG 4 cut(s) 158, 456, 557, 1547
Eco81I CCTNAGG 1 cut(s) 755
Eco88I CYCGRG 1 cut(s) 95
EcoICRI GAGCTC 1 cut(s) 1183
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 1 cut(s) 900
EcoT38I GRGCYC 1 cut(s) 1185
ErhI CCWWGG 1 cut(s) 900
FaeI CATG 5 cut(s) 128, 512, 684, 793, 1332
FalI AAGNNNNNCTT 2 cut(s) 555, 587
FaqI GGGAC 1 cut(s) 1114
FatI CATG 5 cut(s) 124, 508, 680, 789, 1328
FbaI TGATCA 3 cut(s) 375, 511, 553
FblI GTMKAC 1 cut(s) 879
Fnu4HI GCNGC 3 cut(s) 41, 723, 1067
FokI GGATG 8 cut(s) 23, 236, 347, 563, 1106, 1247, 1280, 1430
FriOI GRGCYC 1 cut(s) 1185
Fsp4HI GCNGC 3 cut(s) 41, 723, 1067
FspBI CTAG 4 cut(s) 467, 605, 786, 1352
FspI TGCGCA 1 cut(s) 302
GlaI GCGC 2 cut(s) 81, 302
GluI GCNGC 3 cut(s) 41, 723, 1067
GsuI CTGGAG 1 cut(s) 1654
HaeII RGCGCY 1 cut(s) 83
HapII CCGG 1 cut(s) 1091
HhaI GCGC 2 cut(s) 82, 303
Hin1II CATG 5 cut(s) 128, 512, 684, 793, 1332
Hin6I GCGC 2 cut(s) 80, 301
HinP1I GCGC 2 cut(s) 80, 301
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 4 cut(s) 181, 479, 794, 937
HpaII CCGG 1 cut(s) 1091
HphI GGTGA 1 cut(s) 1303
Hpy166II GTNNAC 2 cut(s) 880, 1495
Hpy188III TCNNGA 5 cut(s) 395, 575, 587, 866, 1445
Hpy8I GTNNAC 2 cut(s) 880, 1495
HpyAV CCTTC 8 cut(s) 355, 401, 415, 962, 970, 1126, 1429, 1522
HpyCH4III ACNGT 2 cut(s) 849, 985
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 8 cut(s) 58, 205, 684, 861, 1231, 1322, 1332, 1473
HpyF10VI GCNNNNNNNGC 1 cut(s) 1479
HpyF3I CTNAG 9 cut(s) 111, 525, 738, 755, 810, 1028, 1104, 1140, 1161
HpySE526I ACGT 1 cut(s) 385
Hsp92II CATG 5 cut(s) 128, 512, 684, 793, 1332
HspAI GCGC 2 cut(s) 80, 301
Ksp22I TGATCA 3 cut(s) 375, 511, 553
Kzo9I GATC 8 cut(s) 375, 451, 511, 535, 553, 760, 1384, 1410
LguI GCTCTTC 1 cut(s) 1173
LmnI GCTCC 1 cut(s) 1207
Lsp1109I GCAGC 3 cut(s) 27, 734, 1078
LweI GCATC 2 cut(s) 325, 1225
MaeI CTAG 4 cut(s) 467, 605, 786, 1352
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 5 cut(s) 386, 889, 1217, 1504, 1555
MalI GATC 8 cut(s) 377, 453, 513, 537, 555, 762, 1386, 1412
MboI GATC 8 cut(s) 375, 451, 511, 535, 553, 760, 1384, 1410
MfeI CAATTG 2 cut(s) 630, 1016
MflI RGATCY 2 cut(s) 535, 760
MhlI GDGCHC 1 cut(s) 1185
MlyI GAGTC 2 cut(s) 190, 931
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 1 cut(s) 1091
MunI CAATTG 2 cut(s) 630, 1016
MwoI GCNNNNNNNGC 1 cut(s) 1479
NdeII GATC 8 cut(s) 375, 451, 511, 535, 553, 760, 1384, 1410
NlaIII CATG 5 cut(s) 128, 512, 684, 793, 1332
NlaIV GGNNCC 1 cut(s) 762
NmuCI GTSAC 2 cut(s) 889, 1504
NsbI TGCGCA 1 cut(s) 302
NspI RCATGY 1 cut(s) 1332
PaeI GCATGC 1 cut(s) 1332
PaeR7I CTCGAG 1 cut(s) 95
PciSI GCTCTTC 1 cut(s) 1173
PfeI GAWTC 2 cut(s) 479, 794
PkrI GCNGC 3 cut(s) 42, 724, 1068
Ple19I CGATCG 1 cut(s) 1413
PleI GAGTC 2 cut(s) 189, 931
PpsI GAGTC 2 cut(s) 189, 931
Psp124BI GAGCTC 1 cut(s) 1185
PspN4I GGNNCC 1 cut(s) 762
PspXI VCTCGAGB 1 cut(s) 95
PstI CTGCAG 1 cut(s) 1233
PsuI RGATCY 2 cut(s) 535, 760
PvuI CGATCG 1 cut(s) 1413
RsaI GTAC 5 cut(s) 384, 625, 1008, 1496, 1535
RsaNI GTAC 5 cut(s) 383, 624, 1007, 1495, 1534
SacI GAGCTC 1 cut(s) 1185
SapI GCTCTTC 1 cut(s) 1173
SatI GCNGC 3 cut(s) 41, 723, 1067
Sau3AI GATC 8 cut(s) 375, 451, 511, 535, 553, 760, 1384, 1410
SchI GAGTC 2 cut(s) 190, 931
SduI GDGCHC 1 cut(s) 1185
SfaNI GCATC 2 cut(s) 325, 1225
SfcI CTRYAG 1 cut(s) 1229
Sfr274I CTCGAG 1 cut(s) 95
SlaI CTCGAG 1 cut(s) 95
SmlI CTYRAG 2 cut(s) 95, 455
SmoI CTYRAG 2 cut(s) 95, 455
SphI GCATGC 1 cut(s) 1332
SsiI CCGC 2 cut(s) 43, 1272
SspI AATATT 2 cut(s) 695, 1172
SspMI CTAG 4 cut(s) 467, 605, 786, 1352
SstI GAGCTC 1 cut(s) 1185
StyI CCWWGG 1 cut(s) 900
TaaI ACNGT 2 cut(s) 849, 985
TaiI ACGT 1 cut(s) 388
TaqI TCGA 4 cut(s) 96, 252, 1413, 1541
TatI WGTACW 4 cut(s) 623, 1006, 1494, 1533
TfiI GAWTC 2 cut(s) 479, 794
TscAI CASTG 2 cut(s) 746, 990
TseFI GTSAC 2 cut(s) 889, 1504
TseI GCWGC 3 cut(s) 40, 722, 1066
Tsp45I GTSAC 2 cut(s) 889, 1504
TspRI CASTG 2 cut(s) 746, 990
Vha464I CTTAAG 1 cut(s) 455
XapI RAATTY 6 cut(s) 805, 958, 1110, 1421, 1440, 1659
XceI RCATGY 1 cut(s) 1332
XhoI CTCGAG 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 879
XspI CTAG 4 cut(s) 467, 605, 786, 1352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.