Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006219.1

Orthogroup ID

OG0006925

Physical Location & Seq

Genomic Coordinates Forward (+)

25775 .. 30624

Gene Structure 4850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006219.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1962 bp

atggatataggaaaattgcaacaaaatgtacgtcatctgactcatgtctttgaagaggccttcttagagcagagaagagtcttttcaaaatccaaagctcaaatagatgaacttaagaaaaagcttgagcagacaagatgccaacagaaagagctcgaggaaaaacttgagaagagtgaagctcaaaatgaagatcttcagaagaagcatgatcacagtgaagctcagaggaaagaacttatgaaaaggcatgaaatgagtgaagctaatatgaaagagctctggaaaaagattgtgcatagtgaagctgatatgaaagcgcttctgaaaaagcttgagtatattgaggctcagaaaaaagagcatgagaaaactgaaaaagctcaaaaggaagaacttgctaaaaaattgcttcagcagagtctcattcaaaaaaagaaattgcaacttatgttcagcttggatgataataaggctattaaagagctattcgaggaaaagaaaaagaatgagaagcttgatggggaattgaatgagttgcgcaaccatcataatctcctgcttgaactaaaggatgctgttctgaataagttaaagaagaaggaagaagagttgatcaatgtacgttaccttcttgaacagaccttcttggagaaagaagcctttttaaaatctgaagctctaaagaatgatcttaagaaaatgctaggtgagagtgaatctgaaagaaatgaacttcaaaaaaagcatgatcattgtgaagctcagaagaaagatcttctgaaaaaggatgatcagagtgaagccgaactacaggaggctcgtcaagagttcatcaatggactagggggattaaacttctgtactacaattggcgtgaagagaatgggagagcttgacaacaaaccatttcaaacttcatgcaagagacaatattctaaaaaagaagctgatgacaaggcagcaacactatattctcaatgggaaggctacctcagggatccaaattggtatccattcacaactagcatggattcttgtggaaattctaagctgactatcaacgaagaagatgaaaaattgaaacagttaaaggtctgcaatcttgatatcgaagtatacaaggctgtgacaactgccttgctggaattgaatagctataataccaatggtaggactccaataacagaattatggaattttaaagaagggaggaaggcaacagtgaaagagggaatatcgtatgtactgaaccaattgaaactgctgagaaagagggttggtaaaatgctgtcagaacaaaagaaaaaaccggatgatgggactaatgaaattcaaaagaagttagaggagaaggaagctgagttgaaagatttaaaagctgagttagaatattcagaagagctcaactctacactatttgtcaaggagcgtgaaagtaacgatgaactgcaggatgctcgcaaggagttgatcaggcaggaactggtggatggcggttttattggcgtgaagagaatgggagagcttgacatcaccccttttgcaaccgcatgcaagagagataattctatgctagaaccagaggtgtggcaggattgtattagtgatccaagctggtatccttttaaaccgatcgaggataaatttggaaatcggaaggaaattcttgatgtagaagatgaaaaattgaagtgtataaagggcaacgatggagtgtacaaggcagtcacaactgccttgatggaactgaaggagtacaattcgagtgctagcaaggcgcttccttcccacggaagctcaagctttcctcttccttcttccttcctcctttataatctcaatactgcagtagcttcttctccccacacaaggcacagaggaaaagaagaaaatggacgtggatatgatcaaagcttgtcaagaaggttgagagggcacgtgaagagggcttgcggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

653

Amino Acids

75.91

Weight (kDa)

7.54

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006925)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36270 FvH4_3g36300
rosa_chinensis	RchiOBHm_Chr5g0065081 RchiOBHm_Chr5g0065111
rosa_laevigata	RLG00000035750 RLG00000035757
rosa_multiflora	Rmu_sc0002915.1_g000011 Rmu_sc0002915.1_g000016 Rmu_sc0006219.1_g000001 Rmu_sc0006219.1_g000008
rosa_roxburghii	Rroxscaffold_1G00016210 Rroxscaffold_1G00016240
rosa_rugosa	Rorug05G0367600 Rorug05G0367900 Rorug05G0368000
rosa_samantha	Rh5AG426200 Rh5AG426400 Rh5AG426500 Rh5BG441400 Rh5BG441700 Rh5CG464100 Rh5CG464300 Rh5DG453900 Rh5DG454200
rosa_wichuraiana	Rw5G040040 Rw5G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1836
Acc16I	TGCGCA	1 cut(s)	542
AccI	GTMKAC	1 cut(s)	1119
AciI	CCGC	3 cut(s)	1497, 1551, 1956
AclWI	GGATC	3 cut(s)	995, 1008, 1604
AcsI	RAATTY	5 cut(s)	1045, 1198, 1332, 1646, 1665
AcuI	CTGAAG	4 cut(s)	182, 398, 696, 1772
AcvI	CACGTG	1 cut(s)	1942
AfaI	GTAC	6 cut(s)	30, 624, 865, 1248, 1721, 1760
AfeI	AGCGCT	1 cut(s)	321
AfiI	CCNNNNNNNGG	4 cut(s)	1173, 1319, 1793, 1872
AflII	CTTAAG	2 cut(s)	113, 695
AjiI	CACGTC	1 cut(s)	1901
Alw21I	GWGCWC	3 cut(s)	156, 282, 1407
Alw26I	GTCTC	2 cut(s)	428, 922
AlwI	GGATC	3 cut(s)	995, 1008, 1604
AlwNI	CAGNNNCTG	1 cut(s)	1486
Ama87I	CYCGRG	1 cut(s)	155
Aor51HI	AGCGCT	1 cut(s)	321
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	962
ApoI	RAATTY	5 cut(s)	1045, 1198, 1332, 1646, 1665
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
Asp700I	GAANNNNTTC	1 cut(s)	195
AspLEI	GCGC	3 cut(s)	322, 543, 1783
AsuHPI	GGTGA	2 cut(s)	722, 1528
AsuNHI	GCTAGC	1 cut(s)	1772
AvaI	CYCGRG	1 cut(s)	155
AxyI	CCTNAGG	1 cut(s)	995
BaeGI	GKGCMC	1 cut(s)	1941
BamHI	GGATCC	1 cut(s)	1000
BanII	GRGCYC	3 cut(s)	156, 282, 1407
BarI	GAAGNNNNNNTAC	4 cut(s)	615, 647, 795, 827
BbrPI	CACGTG	1 cut(s)	1942
Bbv12I	GWGCWC	3 cut(s)	156, 282, 1407
BbvI	GCAGC	1 cut(s)	974
BccI	CCATC	6 cut(s)	515, 555, 1313, 1487, 1706, 1738
BcgI	CGANNNNNNTGC	2 cut(s)	1442, 1476
BciVI	GTATCC	2 cut(s)	1023, 1632
BclI	TGATCA	6 cut(s)	211, 615, 751, 793, 1473, 1909
BcoDI	GTCTC	2 cut(s)	428, 922
BfaI	CTAG	5 cut(s)	707, 845, 1026, 1577, 1773
BfmI	CTRYAG	3 cut(s)	812, 1451, 1848
BfoI	RGCGCY	2 cut(s)	323, 1784
BfrI	CTTAAG	2 cut(s)	113, 695
BfuI	GTATCC	2 cut(s)	1023, 1632
BglII	AGATCT	2 cut(s)	193, 775
BisI	GCNGC	1 cut(s)	963
BlsI	GCNGC	1 cut(s)	964
BmeT110I	CYCGRG	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	1901
BmiI	GGNNCC	1 cut(s)	1002
BmsI	GCATC	3 cut(s)	128, 565, 1447
BmtI	GCTAGC	1 cut(s)	1776
BoxI	GACNNNNGTC	1 cut(s)	44
BplI	GAGNNNNNCTC	4 cut(s)	166, 198, 1394, 1426
BpuEI	CTTGAG	4 cut(s)	146, 188, 356, 1786
BsaAI	YACGTR	1 cut(s)	1942
BsaJI	CCNNGG	1 cut(s)	1792
BsaWI	WCCGGW	1 cut(s)	1312
Bsc4I	CCNNNNNNNGG	4 cut(s)	1173, 1319, 1793, 1872
Bse1I	ACTGG	1 cut(s)	1491
Bse21I	CCTNAGG	1 cut(s)	995
BseDI	CCNNGG	1 cut(s)	1792
BseGI	GGATG	6 cut(s)	469, 580, 796, 1321, 1462, 1498
BseLI	CCNNNNNNNGG	4 cut(s)	1173, 1319, 1793, 1872
BseMII	CTCAG	7 cut(s)	239, 365, 779, 1009, 1259, 1353, 1374
BseNI	ACTGG	1 cut(s)	1491
BseRI	GAGGAG	1 cut(s)	1364
BseSI	GKGCMC	1 cut(s)	1941
BseXI	GCAGC	1 cut(s)	974
Bsh1285I	CGRYCG	1 cut(s)	1638
BshFI	GGCC	1 cut(s)	59
BsiEI	CGRYCG	1 cut(s)	1638
BsiHKAI	GWGCWC	3 cut(s)	156, 282, 1407
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	1313
BslFI	GGGAC	1 cut(s)	1336
BslI	CCNNNNNNNGG	4 cut(s)	1173, 1319, 1793, 1872
BsmAI	GTCTC	2 cut(s)	428, 922
BsmFI	GGGAC	1 cut(s)	1336
BsnI	GGCC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	4 cut(s)	156, 282, 1407, 1941
Bsp1407I	TGTACA	1 cut(s)	1719
BspACI	CCGC	3 cut(s)	1497, 1551, 1956
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	7 cut(s)	238, 364, 778, 1008, 1260, 1354, 1375
BspLI	GGNNCC	1 cut(s)	1002
BspMAI	CTGCAG	2 cut(s)	1455, 1852
BspOI	GCTAGC	1 cut(s)	1776
BspPI	GGATC	3 cut(s)	995, 1008, 1604
BspQI	GCTCTTC	1 cut(s)	1395
BspTI	CTTAAG	2 cut(s)	113, 695
BsrGI	TGTACA	1 cut(s)	1719
BsrI	ACTGG	1 cut(s)	1491
BssECI	CCNNGG	1 cut(s)	1792
BssNAI	GTATAC	1 cut(s)	1120
Bst1107I	GTATAC	1 cut(s)	1120
Bst4CI	ACNGT	3 cut(s)	218, 1089, 1225
Bst6I	CTCTTC	9 cut(s)	48, 70, 167, 603, 875, 1395, 1508, 1818, 1940
BstAFI	CTTAAG	2 cut(s)	113, 695
BstAUI	TGTACA	1 cut(s)	1719
BstBAI	YACGTR	1 cut(s)	1942
BstC8I	GCNNGC	4 cut(s)	1462, 1555, 1774, 1954
BstDEI	CTNAG	9 cut(s)	64, 225, 351, 765, 995, 1050, 1268, 1362, 1383
BstDSI	CCRYGG	1 cut(s)	1792
BstF5I	GGATG	6 cut(s)	469, 580, 796, 1321, 1462, 1498
BstH2I	RGCGCY	2 cut(s)	323, 1784
BstHHI	GCGC	3 cut(s)	322, 543, 1783
BstMAI	GTCTC	2 cut(s)	428, 922
BstMCI	CGRYCG	1 cut(s)	1638
BstMWI	GCNNNNNNNGC	1 cut(s)	1778
BstNSI	RCATGY	1 cut(s)	1557
BstPAI	GACNNNNGTC	1 cut(s)	44
BstSFI	CTRYAG	3 cut(s)	812, 1451, 1848
BstSLI	GKGCMC	1 cut(s)	1941
BstV1I	GCAGC	1 cut(s)	974
BstX2I	RGATCY	3 cut(s)	193, 775, 1000
BstXI	CCANNNNNNTGG	1 cut(s)	1590
BstYI	RGATCY	3 cut(s)	193, 775, 1000
BstZ17I	GTATAC	1 cut(s)	1120
Bsu36I	CCTNAGG	1 cut(s)	995
BsuI	GTATCC	2 cut(s)	1023, 1632
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	1792
BtrI	CACGTC	1 cut(s)	1901
BtsCI	GGATG	6 cut(s)	469, 580, 796, 1321, 1462, 1498
BtsIMutI	CAGTG	2 cut(s)	223, 1230
Cac8I	GCNNGC	4 cut(s)	1462, 1555, 1774, 1954
CaiI	CAGNNNCTG	1 cut(s)	1486
CfoI	GCGC	3 cut(s)	322, 543, 1783
Csp6I	GTAC	6 cut(s)	29, 623, 864, 1247, 1720, 1759
CviAII	CATG	8 cut(s)	44, 209, 251, 365, 749, 921, 1030, 1554
CviQI	GTAC	6 cut(s)	29, 623, 864, 1247, 1720, 1759
DdeI	CTNAG	9 cut(s)	64, 225, 351, 765, 995, 1050, 1268, 1362, 1383
DraI	TTTAAA	4 cut(s)	669, 1204, 1377, 1630
Eam1104I	CTCTTC	9 cut(s)	48, 70, 167, 603, 875, 1395, 1508, 1818, 1940
EarI	CTCTTC	9 cut(s)	48, 70, 167, 603, 875, 1395, 1508, 1818, 1940
Ecl136II	GAGCTC	3 cut(s)	154, 280, 1405
Eco147I	AGGCCT	1 cut(s)	59
Eco24I	GRGCYC	3 cut(s)	156, 282, 1407
Eco32I	GATATC	1 cut(s)	1111
Eco47III	AGCGCT	1 cut(s)	321
Eco53kI	GAGCTC	3 cut(s)	154, 280, 1405
Eco57I	CTGAAG	4 cut(s)	182, 398, 696, 1772
Eco72I	CACGTG	1 cut(s)	1942
Eco81I	CCTNAGG	1 cut(s)	995
Eco88I	CYCGRG	1 cut(s)	155
EcoICRI	GAGCTC	3 cut(s)	154, 280, 1405
EcoRV	GATATC	1 cut(s)	1111
EcoT38I	GRGCYC	3 cut(s)	156, 282, 1407
FaeI	CATG	8 cut(s)	47, 212, 254, 368, 752, 924, 1033, 1557
FaqI	GGGAC	1 cut(s)	1336
FatI	CATG	8 cut(s)	43, 208, 250, 364, 748, 920, 1029, 1553
FbaI	TGATCA	6 cut(s)	211, 615, 751, 793, 1473, 1909
FblI	GTMKAC	1 cut(s)	1119
Fnu4HI	GCNGC	1 cut(s)	963
FokI	GGATG	6 cut(s)	476, 587, 803, 1328, 1469, 1505
FriOI	GRGCYC	3 cut(s)	156, 282, 1407
Fsp4HI	GCNGC	1 cut(s)	963
FspBI	CTAG	5 cut(s)	707, 845, 1026, 1577, 1773
FspI	TGCGCA	1 cut(s)	542
GlaI	GCGC	3 cut(s)	321, 542, 1782
GluI	GCNGC	1 cut(s)	963
HaeII	RGCGCY	2 cut(s)	323, 1784
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	1 cut(s)	1313
HhaI	GCGC	3 cut(s)	322, 543, 1783
Hin1II	CATG	8 cut(s)	47, 212, 254, 368, 752, 924, 1033, 1557
Hin6I	GCGC	3 cut(s)	320, 541, 1781
HinP1I	GCGC	3 cut(s)	320, 541, 1781
HindIII	AAGCTT	5 cut(s)	122, 332, 515, 1804, 1915
HinfI	GANTC	6 cut(s)	40, 78, 421, 719, 1034, 1177
HpaII	CCGG	1 cut(s)	1313
HphI	GGTGA	2 cut(s)	722, 1528
Hpy166II	GTNNAC	2 cut(s)	1120, 1720
Hpy188III	TCNNGA	6 cut(s)	283, 635, 827, 1106, 1670, 1923
Hpy8I	GTNNAC	2 cut(s)	1120, 1720
HpyCH4III	ACNGT	3 cut(s)	218, 1089, 1225
HpyCH4IV	ACGT	4 cut(s)	31, 625, 1900, 1941
HpyCH4V	TGCA	9 cut(s)	19, 298, 445, 924, 1101, 1453, 1547, 1557, 1850
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1778
HpyF3I	CTNAG	9 cut(s)	64, 225, 351, 765, 995, 1050, 1268, 1362, 1383
HpySE526I	ACGT	4 cut(s)	31, 625, 1900, 1941
Hsp92II	CATG	8 cut(s)	47, 212, 254, 368, 752, 924, 1033, 1557
HspAI	GCGC	3 cut(s)	320, 541, 1781
Ksp22I	TGATCA	6 cut(s)	211, 615, 751, 793, 1473, 1909
LguI	GCTCTTC	1 cut(s)	1395
LmnI	GCTCC	1 cut(s)	1429
Lsp1109I	GCAGC	1 cut(s)	974
LweI	GCATC	3 cut(s)	128, 565, 1447
MaeI	CTAG	5 cut(s)	707, 845, 1026, 1577, 1773
MaeII	ACGT	4 cut(s)	31, 625, 1900, 1941
MaeIII	GTNAC	4 cut(s)	626, 1129, 1439, 1729
MfeI	CAATTG	2 cut(s)	870, 1256
MflI	RGATCY	3 cut(s)	193, 775, 1000
MhlI	GDGCHC	4 cut(s)	156, 282, 1407, 1941
MlyI	GAGTC	4 cut(s)	34, 87, 430, 1171
MroXI	GAANNNNTTC	1 cut(s)	195
MspCI	CTTAAG	2 cut(s)	113, 695
MspI	CCGG	1 cut(s)	1313
MunI	CAATTG	2 cut(s)	870, 1256
MwoI	GCNNNNNNNGC	1 cut(s)	1778
NheI	GCTAGC	1 cut(s)	1772
NlaIII	CATG	8 cut(s)	47, 212, 254, 368, 752, 924, 1033, 1557
NlaIV	GGNNCC	1 cut(s)	1002
NmuCI	GTSAC	2 cut(s)	1129, 1729
NsbI	TGCGCA	1 cut(s)	542
NspI	RCATGY	1 cut(s)	1557
PaeI	GCATGC	1 cut(s)	1557
PaeR7I	CTCGAG	1 cut(s)	155
PceI	AGGCCT	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	1395
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	719, 1034
PkrI	GCNGC	1 cut(s)	964
Ple19I	CGATCG	1 cut(s)	1638
PleI	GAGTC	4 cut(s)	34, 86, 429, 1171
PmaCI	CACGTG	1 cut(s)	1942
PmlI	CACGTG	1 cut(s)	1942
PpsI	GAGTC	4 cut(s)	34, 86, 429, 1171
Ppu21I	YACGTR	1 cut(s)	1942
PshAI	GACNNNNGTC	1 cut(s)	44
PsiI	TTATAA	1 cut(s)	1836
Psp124BI	GAGCTC	3 cut(s)	156, 282, 1407
PspCI	CACGTG	1 cut(s)	1942
PspN4I	GGNNCC	1 cut(s)	1002
PspXI	VCTCGAGB	1 cut(s)	155
PstI	CTGCAG	2 cut(s)	1455, 1852
PstNI	CAGNNNCTG	1 cut(s)	1486
PsuI	RGATCY	3 cut(s)	193, 775, 1000
PvuI	CGATCG	1 cut(s)	1638
RsaI	GTAC	6 cut(s)	30, 624, 865, 1248, 1721, 1760
RsaNI	GTAC	6 cut(s)	29, 623, 864, 1247, 1720, 1759
SacI	GAGCTC	3 cut(s)	156, 282, 1407
SapI	GCTCTTC	1 cut(s)	1395
SatI	GCNGC	1 cut(s)	963
SchI	GAGTC	4 cut(s)	34, 87, 430, 1171
SduI	GDGCHC	4 cut(s)	156, 282, 1407, 1941
SfaNI	GCATC	3 cut(s)	128, 565, 1447
SfcI	CTRYAG	3 cut(s)	812, 1451, 1848
Sfr274I	CTCGAG	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	7 cut(s)	113, 125, 155, 167, 335, 695, 1801
SmoI	CTYRAG	7 cut(s)	113, 125, 155, 167, 335, 695, 1801
SphI	GCATGC	1 cut(s)	1557
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	3 cut(s)	1497, 1551, 1956
SspI	AATATT	2 cut(s)	935, 1394
SspMI	CTAG	5 cut(s)	707, 845, 1026, 1577, 1773
SstI	GAGCTC	3 cut(s)	156, 282, 1407
StuI	AGGCCT	1 cut(s)	59
TaaI	ACNGT	3 cut(s)	218, 1089, 1225
TaiI	ACGT	4 cut(s)	34, 628, 1903, 1944
TaqI	TCGA	5 cut(s)	156, 492, 1113, 1638, 1766
TatI	WGTACW	4 cut(s)	863, 1246, 1719, 1758
TfiI	GAWTC	2 cut(s)	719, 1034
TscAI	CASTG	2 cut(s)	223, 1230
TseFI	GTSAC	2 cut(s)	1129, 1729
TseI	GCWGC	1 cut(s)	962
Tsp45I	GTSAC	2 cut(s)	1129, 1729
TspGWI	ACGGA	1 cut(s)	1809
TspRI	CASTG	2 cut(s)	223, 1230
Vha464I	CTTAAG	2 cut(s)	113, 695
XapI	RAATTY	5 cut(s)	1045, 1198, 1332, 1646, 1665
XceI	RCATGY	1 cut(s)	1557
XhoI	CTCGAG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	1119
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	5 cut(s)	707, 845, 1026, 1577, 1773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.