Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006925

Physical Location & Seq

Genomic Coordinates Reverse (-)

20237700 .. 20241883

Gene Structure 4184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00016240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1833 bp

ATGTACCTCATCTCTTTGGAGAGGCCTTCTCAGAGCAGGGGAAAAGTCTTTTCAAACTCTGAGGTTCAAATAAATGATCTTAAGATAAAGCTTGAGCATACAAGATCTCAACAGAAAGAACTTCAGGAAAAACTTGACAAGAGTGAAGCTCAAAAGGAAGAGCTTCGGAAAAAGATTGTGCATAGCGAGGCTCAGAATAAAGAGCTTAAGAAAACTGAAGAAGCTCAAAGGAAAGCACTTAATGAAGTGCTTCAGGAGAGTGAGACTAGAAACAGAACTCTGGAACAGAATGAGAAGCTTGGTAGGAAATTGAACAGATTGCTCAACCATTGTGATCTCCAGCATGAACAAATGAATGTAGTTTTGAATAAGTTAAAGAAGATGGAAGAAGAGTCGGTAGAAGTACGTGCTCTATACTCTACACTTATGCGTAAGGAGAACAATAATCATGATGAGCTGATCAATGTACGATACCTTCTTGAAAAGACATTCTTAGAAAAAGAAGCCTTTTCAAAATCTGAAGATCTAAACAATGATCTTATGAAAAGGCTAGGTGAGAGTGAATCCCAAAGAAAAGAGCTTCAAGAAAAGCATGATCATAGTGAATCTCAGAAGAAAGAGCTACAGGGGGAGCTTGAGCGGATTGAAGCTCAGAGGAAAGAGCTTCAGAAAAAGGATGATCAGAGTGAAGCCGAACTGCAGGAGGCTCGTAAAGAGTTCATCAATGGACTAGGAGGTTTGAGAATTTGTTCTTTAATTGGTGTGAAGAAAATGGGAGACCTCAGCAAAGAACCATTTCAAACTTTATGCAAGAGACGATATTCTTTAAAAGAAGCAGATGGCAAGGCAGCAGCACTATATTCTCAGTGGGAGGGCAACCTTAGGGATCCAAACTGGTATCCTTTCATAACTAGCATGGATTCTTGTGGAAATTCTAAGCTAACAATCAATGAAGACGATGAAAAATTGAAACAGATAAAGGTTGACAATCTTGGTAGTGAAGTTTACAAGGCTGTGACAACTGCCCTTGTGGAATTGAATGGCTATGATACTAATGGTAAGAGTGCAAGAGCAGAATTATGGAATTTTAAAGAAGGGAGGAGGGCAACATTGAAAGAGGCAATATCGTCTGTACTGAAGCAATTGAAACTGCAGAAAAACAGGATTGGTAAAAAGTTGTCAGAACAAAAGAAACTTGATGTGAAGAAGACAAACCCCGATGAATTGGAACAGCAGCTTGATGTGAAGAAGAAAGACCCGGGTGACAGCATTAATGAAATTCAAAAGAAGTTAAAGGAGAAGGAAGATGAGTTGAAAGATTTAAAAGCTGATTTTGAATATTCAGAAGCTCTCAACTCTACACTATTTGTCAAGGAGCGTGAAAGTAATAATGAACTGCAGGATGCTCGCAAGGAGTTAATCAGGGGACTGGTGGATGACGGTTTTATTGGCGTGAAGAGAATGGGAGAGCTTGACGTCACGCCTTTTGCAACTGCCAGCAAGAGAGACCATTCTATGCTAGAACCAGAGGTGTGGCAAGATTATCTTAGTGATCCAAGCTGGCATCCGTTTAAAGCGATCGAGGATGAATTTGGAAATCGGAAGGAAATTCTTGATGTAGAAGATGAAAAATTGAAGAGTATAAAGGGCGACGATGCAGTGTACAAGGCAGTCACAACTGCCTTGATGGAATTGAAGGAGTACAATTCGAGTGGTATGTATGTGACAGATGAACTATGGAACTTTCAAAAAGGGAGGAGGGCAACACTACAGGAGGGATTATCATATATATTATTAAACTGGAGACCTCTGAAAAGGAAAAGAAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

610

Amino Acids

71.03

Weight (kDa)

6.83

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	256 - 387	8.2e-41	XH domain
XH	PF03469	486 - 607	2.9e-35	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006925)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36270 FvH4_3g36300
rosa_chinensis	RchiOBHm_Chr5g0065081 RchiOBHm_Chr5g0065111
rosa_laevigata	RLG00000035750 RLG00000035757
rosa_multiflora	Rmu_sc0002915.1_g000011 Rmu_sc0002915.1_g000016 Rmu_sc0006219.1_g000001 Rmu_sc0006219.1_g000008
rosa_roxburghii	Rroxscaffold_1G00016210 Rroxscaffold_1G00016240
rosa_rugosa	Rorug05G0367600 Rorug05G0367900 Rorug05G0368000
rosa_samantha	Rh5AG426200 Rh5AG426400 Rh5AG426500 Rh5BG441400 Rh5BG441700 Rh5CG464100 Rh5CG464300 Rh5DG453900 Rh5DG454200
rosa_wichuraiana	Rw5G040040 Rw5G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1479
AccBSI	CCGCTC	1 cut(s)	640
AciI	CCGC	1 cut(s)	640
AclWI	GGATC	3 cut(s)	881, 894, 1547
AcsI	RAATTY	7 cut(s)	744, 931, 1084, 1278, 1589, 1608, 1827
AcuI	CTGAAG	6 cut(s)	107, 236, 237, 540, 650, 1157
AcyI	GRCGYC	1 cut(s)	1476
AfaI	GTAC	6 cut(s)	5, 405, 468, 1134, 1664, 1703
AflII	CTTAAG	2 cut(s)	80, 206
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	5 cut(s)	257, 771, 808, 1500, 1798
AlwI	GGATC	3 cut(s)	881, 894, 1547
Ama87I	CYCGRG	1 cut(s)	1258
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	3 cut(s)	848, 851, 1234
ApoI	RAATTY	7 cut(s)	744, 931, 1084, 1278, 1589, 1608, 1827
AseI	ATTAAT	1 cut(s)	1272
Asp700I	GAANNNNTTC	4 cut(s)	162, 249, 748, 795
AsuC2I	CCSGG	2 cut(s)	1259, 1260
AsuHPI	GGTGA	2 cut(s)	566, 1274
AvaI	CYCGRG	1 cut(s)	1258
AxyI	CCTNAGG	1 cut(s)	881
BamHI	GGATCC	1 cut(s)	886
BarI	GAAGNNNNNNTAC	2 cut(s)	459, 491
BbsI	GAAGAC	2 cut(s)	960, 1214
Bbv12I	GWGCWC	1 cut(s)	412
BbvCI	CCTCAGC	1 cut(s)	782
BbvI	GCAGC	3 cut(s)	860, 863, 1246
BccI	CCATC	3 cut(s)	376, 833, 1681
BcgI	CGANNNNNNTGC	4 cut(s)	689, 723, 1388, 1422
BciVI	GTATCC	1 cut(s)	909
BclI	TGATCA	3 cut(s)	459, 595, 679
BcnI	CCSGG	2 cut(s)	1259, 1260
BcoDI	GTCTC	5 cut(s)	257, 771, 808, 1500, 1798
BfaI	CTAG	5 cut(s)	267, 551, 731, 912, 1520
BfmI	CTRYAG	5 cut(s)	623, 698, 1151, 1397, 1769
BfrI	CTTAAG	2 cut(s)	80, 206
BfuI	GTATCC	1 cut(s)	909
BglII	AGATCT	2 cut(s)	104, 523
BisI	GCNGC	3 cut(s)	849, 852, 1235
BlsI	GCNGC	3 cut(s)	850, 853, 1236
Bme1390I	CCNGG	2 cut(s)	1259, 1260
BmeT110I	CYCGRG	1 cut(s)	1258
BmiI	GGNNCC	1 cut(s)	888
BmrFI	CCNGG	2 cut(s)	1259, 1260
BmsI	GCATC	3 cut(s)	1393, 1573, 1645
BpiI	GAAGAC	2 cut(s)	960, 1214
BplI	GAGNNNNNCTC	4 cut(s)	13, 45, 133, 165
BpmI	CTGGAG	2 cut(s)	323, 1822
Bpu10I	CCTNAGC	1 cut(s)	782
BpuEI	CTTGAG	2 cut(s)	113, 656
BpuMI	CCSGG	2 cut(s)	1259, 1260
BsaAI	YACGTR	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	1476
BsaI	GGTCTC	3 cut(s)	771, 1500, 1798
BsaJI	CCNNGG	1 cut(s)	1258
Bse1I	ACTGG	3 cut(s)	899, 1434, 1805
Bse21I	CCTNAGG	1 cut(s)	881
BseDI	CCNNGG	1 cut(s)	1258
BseGI	GGATG	5 cut(s)	682, 1408, 1441, 1564, 1591
BseMII	CTCAG	7 cut(s)	44, 51, 206, 623, 665, 796, 878
BseNI	ACTGG	3 cut(s)	899, 1434, 1805
BseRI	GAGGAG	2 cut(s)	1114, 1771
BseXI	GCAGC	3 cut(s)	860, 863, 1246
Bsh1285I	CGRYCG	1 cut(s)	1581
BshFI	GGCC	1 cut(s)	25
BsiEI	CGRYCG	1 cut(s)	1581
BsiHKAI	GWGCWC	1 cut(s)	412
BsiHKCI	CYCGRG	1 cut(s)	1258
BsiSI	CCGG	1 cut(s)	1259
BslFI	GGGAC	1 cut(s)	1440
BsmAI	GTCTC	5 cut(s)	257, 771, 808, 1500, 1798
BsmBI	CGTCTC	1 cut(s)	808
BsmFI	GGGAC	1 cut(s)	1440
BsnI	GGCC	1 cut(s)	25
Bso31I	GGTCTC	3 cut(s)	771, 1500, 1798
BsoBI	CYCGRG	1 cut(s)	1258
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp1407I	TGTACA	1 cut(s)	1662
BspACI	CCGC	1 cut(s)	640
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	7 cut(s)	43, 52, 205, 622, 664, 795, 877
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	888
BspMAI	CTGCAG	3 cut(s)	702, 1155, 1401
BspPI	GGATC	3 cut(s)	881, 894, 1547
BspQI	GCTCTTC	1 cut(s)	153
BspTI	CTTAAG	2 cut(s)	80, 206
BspTNI	GGTCTC	3 cut(s)	771, 1500, 1798
BsrBI	CCGCTC	1 cut(s)	640
BsrGI	TGTACA	1 cut(s)	1662
BsrI	ACTGG	3 cut(s)	899, 1434, 1805
BssECI	CCNNGG	1 cut(s)	1258
BssNI	GRCGYC	1 cut(s)	1476
Bst4CI	ACNGT	1 cut(s)	1442
Bst6I	CTCTTC	4 cut(s)	153, 384, 1451, 1631
BstACI	GRCGYC	1 cut(s)	1476
BstAFI	CTTAAG	2 cut(s)	80, 206
BstAUI	TGTACA	1 cut(s)	1662
BstBAI	YACGTR	1 cut(s)	407
BstC8I	GCNNGC	3 cut(s)	1408, 1498, 1562
BstF5I	GGATG	5 cut(s)	682, 1408, 1441, 1564, 1591
BstMAI	GTCTC	5 cut(s)	257, 771, 808, 1500, 1798
BstMCI	CGRYCG	1 cut(s)	1581
BstSCI	CCNGG	2 cut(s)	1257, 1258
BstSFI	CTRYAG	5 cut(s)	623, 698, 1151, 1397, 1769
BstV1I	GCAGC	3 cut(s)	860, 863, 1246
BstV2I	GAAGAC	2 cut(s)	960, 1214
BstX2I	RGATCY	3 cut(s)	104, 523, 886
BstXI	CCANNNNNNTGG	1 cut(s)	1533
BstYI	RGATCY	3 cut(s)	104, 523, 886
Bsu36I	CCTNAGG	1 cut(s)	881
BsuI	GTATCC	1 cut(s)	909
BsuRI	GGCC	1 cut(s)	25
BtsCI	GGATG	5 cut(s)	682, 1408, 1441, 1564, 1591
BtsI	GCAGTG	1 cut(s)	1665
BtsIMutI	CAGTG	2 cut(s)	872, 1665
Cac8I	GCNNGC	3 cut(s)	1408, 1498, 1562
CciI	TCATGA	1 cut(s)	448
Cfr9I	CCCGGG	1 cut(s)	1258
Csp6I	GTAC	6 cut(s)	4, 404, 467, 1133, 1663, 1702
CspCI	CAANNNNNGTGG	2 cut(s)	1693, 1728
CviAII	CATG	4 cut(s)	344, 449, 593, 916
CviQI	GTAC	6 cut(s)	4, 404, 467, 1133, 1663, 1702
DraI	TTTAAA	4 cut(s)	828, 1090, 1323, 1573
Eam1104I	CTCTTC	4 cut(s)	153, 384, 1451, 1631
EarI	CTCTTC	4 cut(s)	153, 384, 1451, 1631
Eco147I	AGGCCT	1 cut(s)	25
Eco31I	GGTCTC	3 cut(s)	771, 1500, 1798
Eco57I	CTGAAG	6 cut(s)	107, 236, 237, 540, 650, 1157
Eco81I	CCTNAGG	1 cut(s)	881
Eco88I	CYCGRG	1 cut(s)	1258
Esp3I	CGTCTC	1 cut(s)	808
FaeI	CATG	4 cut(s)	347, 452, 596, 919
FalI	AAGNNNNNCTT	4 cut(s)	476, 508, 1530, 1562
FaqI	GGGAC	1 cut(s)	1440
FatI	CATG	4 cut(s)	343, 448, 592, 915
FbaI	TGATCA	3 cut(s)	459, 595, 679
Fnu4HI	GCNGC	3 cut(s)	849, 852, 1235
FokI	GGATG	5 cut(s)	689, 1415, 1448, 1551, 1598
Fsp4HI	GCNGC	3 cut(s)	849, 852, 1235
FspBI	CTAG	5 cut(s)	267, 551, 731, 912, 1520
GluI	GCNGC	3 cut(s)	849, 852, 1235
GsuI	CTGGAG	2 cut(s)	323, 1822
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	1 cut(s)	1259
Hin1I	GRCGYC	1 cut(s)	1476
Hin1II	CATG	4 cut(s)	347, 452, 596, 919
HincII	GTYRAC	1 cut(s)	985
HindII	GTYRAC	1 cut(s)	985
HindIII	AAGCTT	2 cut(s)	89, 296
HinfI	GANTC	4 cut(s)	392, 563, 605, 920
HpaII	CCGG	1 cut(s)	1259
HphI	GGTGA	2 cut(s)	566, 1274
Hpy166II	GTNNAC	3 cut(s)	985, 1006, 1663
Hpy188III	TCNNGA	7 cut(s)	125, 254, 281, 449, 479, 584, 1613
Hpy8I	GTNNAC	3 cut(s)	985, 1006, 1663
Hpy99I	CGWCG	1 cut(s)	1655
HpyAV	CCTTC	6 cut(s)	36, 485, 1088, 1294, 1597, 1690
HpyCH4III	ACNGT	1 cut(s)	1442
HpyCH4IV	ACGT	2 cut(s)	406, 1476
HpyCH4V	TGCA	8 cut(s)	181, 700, 810, 1067, 1153, 1399, 1490, 1658
HpySE526I	ACGT	2 cut(s)	406, 1476
Hsp92I	GRCGYC	1 cut(s)	1476
Hsp92II	CATG	4 cut(s)	347, 452, 596, 919
Ksp22I	TGATCA	3 cut(s)	459, 595, 679
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	2 cut(s)	631, 1375
Lsp1109I	GCAGC	3 cut(s)	860, 863, 1246
LweI	GCATC	3 cut(s)	1393, 1573, 1645
MaeI	CTAG	5 cut(s)	267, 551, 731, 912, 1520
MaeII	ACGT	2 cut(s)	406, 1476
MaeIII	GTNAC	5 cut(s)	1015, 1262, 1477, 1672, 1723
MbiI	CCGCTC	1 cut(s)	640
MfeI	CAATTG	1 cut(s)	1142
MflI	RGATCY	3 cut(s)	104, 523, 886
MhlI	GDGCHC	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	401
MroXI	GAANNNNTTC	4 cut(s)	162, 249, 748, 795
MspCI	CTTAAG	2 cut(s)	80, 206
MspI	CCGG	1 cut(s)	1259
MspR9I	CCNGG	2 cut(s)	1259, 1260
MunI	CAATTG	1 cut(s)	1142
NciI	CCSGG	2 cut(s)	1259, 1260
NlaIII	CATG	4 cut(s)	347, 452, 596, 919
NlaIV	GGNNCC	1 cut(s)	888
NmuCI	GTSAC	5 cut(s)	1015, 1262, 1477, 1672, 1723
PagI	TCATGA	1 cut(s)	448
PceI	AGGCCT	1 cut(s)	25
PciSI	GCTCTTC	1 cut(s)	153
PdmI	GAANNNNTTC	4 cut(s)	162, 249, 748, 795
PfeI	GAWTC	3 cut(s)	563, 605, 920
PkrI	GCNGC	3 cut(s)	850, 853, 1236
Ple19I	CGATCG	1 cut(s)	1581
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
Ppu21I	YACGTR	1 cut(s)	407
PshBI	ATTAAT	1 cut(s)	1272
PspN4I	GGNNCC	1 cut(s)	888
PstI	CTGCAG	3 cut(s)	702, 1155, 1401
PsuI	RGATCY	3 cut(s)	104, 523, 886
PvuI	CGATCG	1 cut(s)	1581
RsaI	GTAC	6 cut(s)	5, 405, 468, 1134, 1664, 1703
RsaNI	GTAC	6 cut(s)	4, 404, 467, 1133, 1663, 1702
SapI	GCTCTTC	1 cut(s)	153
SatI	GCNGC	3 cut(s)	849, 852, 1235
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	2 cut(s)	1259, 1260
SduI	GDGCHC	1 cut(s)	412
SfaNI	GCATC	3 cut(s)	1393, 1573, 1645
SfcI	CTRYAG	5 cut(s)	623, 698, 1151, 1397, 1769
SmaI	CCCGGG	1 cut(s)	1260
SmlI	CTYRAG	4 cut(s)	80, 92, 206, 635
SmoI	CTYRAG	4 cut(s)	80, 92, 206, 635
SseBI	AGGCCT	1 cut(s)	25
SsiI	CCGC	1 cut(s)	640
SspI	AATATT	1 cut(s)	1340
SspMI	CTAG	5 cut(s)	267, 551, 731, 912, 1520
StuI	AGGCCT	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	1257, 1258
TaaI	ACNGT	1 cut(s)	1442
TaiI	ACGT	2 cut(s)	409, 1479
TaqI	TCGA	2 cut(s)	1581, 1709
TatI	WGTACW	3 cut(s)	1132, 1662, 1701
TfiI	GAWTC	3 cut(s)	563, 605, 920
TscAI	CASTG	2 cut(s)	872, 1665
TseFI	GTSAC	5 cut(s)	1015, 1262, 1477, 1672, 1723
TseI	GCWGC	3 cut(s)	848, 851, 1234
Tsp45I	GTSAC	5 cut(s)	1015, 1262, 1477, 1672, 1723
TspGWI	ACGGA	1 cut(s)	1557
TspMI	CCCGGG	1 cut(s)	1258
TspRI	CASTG	2 cut(s)	872, 1665
Vha464I	CTTAAG	2 cut(s)	80, 206
VspI	ATTAAT	1 cut(s)	1272
XapI	RAATTY	7 cut(s)	744, 931, 1084, 1278, 1589, 1608, 1827
XmaI	CCCGGG	1 cut(s)	1258
XmnI	GAANNNNTTC	4 cut(s)	162, 249, 748, 795
XspI	CTAG	5 cut(s)	267, 551, 731, 912, 1520
ZraI	GACGTC	1 cut(s)	1477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.