XH domain
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g36270 FvH4_3g36300 |
| rosa_chinensis | RchiOBHm_Chr5g0065081 RchiOBHm_Chr5g0065111 |
| rosa_laevigata | RLG00000035750 RLG00000035757 |
| rosa_multiflora | Rmu_sc0002915.1_g000011 Rmu_sc0002915.1_g000016 Rmu_sc0006219.1_g000001 Rmu_sc0006219.1_g000008 |
| rosa_roxburghii | Rroxscaffold_1G00016210 Rroxscaffold_1G00016240 |
| rosa_rugosa | Rorug05G0367600 Rorug05G0367900 Rorug05G0368000 |
| rosa_samantha | Rh5AG426200 Rh5AG426400 Rh5AG426500 Rh5BG441400 Rh5BG441700 Rh5CG464100 Rh5CG464300 Rh5DG453900 Rh5DG454200 |
| rosa_wichuraiana | Rw5G040040 Rw5G040060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 302, 555 |
| AccI | GTMKAC | 1 cut(s) | 879 |
| AccIII | TCCGGA | 1 cut(s) | 42 |
| AciI | CCGC | 1 cut(s) | 1272 |
| AclWI | GGATC | 3 cut(s) | 755, 768, 1379 |
| AcsI | RAATTY | 5 cut(s) | 805, 958, 1110, 1421, 1440 |
| AcuI | CTGAAG | 3 cut(s) | 158, 456, 1547 |
| AfaI | GTAC | 5 cut(s) | 384, 625, 1008, 1496, 1535 |
| AfeI | AGCGCT | 1 cut(s) | 81 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 933 |
| AflII | CTTAAG | 1 cut(s) | 455 |
| Alw21I | GWGCWC | 2 cut(s) | 42, 1185 |
| Alw26I | GTCTC | 2 cut(s) | 188, 1630 |
| AlwI | GGATC | 3 cut(s) | 755, 768, 1379 |
| Aor13HI | TCCGGA | 1 cut(s) | 42 |
| Aor51HI | AGCGCT | 1 cut(s) | 81 |
| ApeKI | GCWGC | 3 cut(s) | 722, 980, 1066 |
| ApoI | RAATTY | 5 cut(s) | 805, 958, 1110, 1421, 1440 |
| AspLEI | GCGC | 3 cut(s) | 82, 303, 556 |
| AspS9I | GGNCC | 1 cut(s) | 402 |
| AsuHPI | GGTGA | 2 cut(s) | 482, 1303 |
| AvaII | GGWCC | 1 cut(s) | 402 |
| AxyI | CCTNAGG | 1 cut(s) | 755 |
| BamHI | GGATCC | 1 cut(s) | 760 |
| BanII | GRGCYC | 2 cut(s) | 42, 1185 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 375, 407, 555, 587 |
| Bbv12I | GWGCWC | 2 cut(s) | 42, 1185 |
| BbvI | GCAGC | 3 cut(s) | 734, 992, 1078 |
| BccI | CCATC | 6 cut(s) | 275, 315, 1091, 1262, 1481, 1513 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1220, 1254 |
| BciVI | GTATCC | 2 cut(s) | 783, 1407 |
| BclI | TGATCA | 3 cut(s) | 375, 511, 1251 |
| BcoDI | GTCTC | 2 cut(s) | 188, 1630 |
| BfaI | CTAG | 4 cut(s) | 467, 605, 786, 1352 |
| BfmI | CTRYAG | 2 cut(s) | 572, 1229 |
| BfoI | RGCGCY | 1 cut(s) | 83 |
| BfrI | CTTAAG | 1 cut(s) | 455 |
| BfuI | GTATCC | 2 cut(s) | 783, 1407 |
| BglII | AGATCT | 1 cut(s) | 535 |
| BisI | GCNGC | 3 cut(s) | 723, 981, 1067 |
| BlsI | GCNGC | 3 cut(s) | 724, 982, 1068 |
| Bme18I | GGWCC | 1 cut(s) | 402 |
| BmgT120I | GGNCC | 1 cut(s) | 402 |
| BmiI | GGNNCC | 1 cut(s) | 762 |
| BmsI | GCATC | 3 cut(s) | 325, 541, 1225 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 172, 204, 738, 770, 1172, 1204 |
| BpmI | CTGGAG | 1 cut(s) | 1654 |
| BpuEI | CTTGAG | 1 cut(s) | 116 |
| BsaI | GGTCTC | 1 cut(s) | 1630 |
| BsaJI | CCNNGG | 1 cut(s) | 900 |
| BsaWI | WCCGGW | 1 cut(s) | 42 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 933 |
| Bse1I | ACTGG | 3 cut(s) | 1095, 1266, 1637 |
| Bse21I | CCTNAGG | 1 cut(s) | 755 |
| BseAI | TCCGGA | 1 cut(s) | 42 |
| BseDI | CCNNGG | 1 cut(s) | 900 |
| BseGI | GGATG | 7 cut(s) | 229, 340, 556, 1099, 1240, 1273, 1423 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 933 |
| BseMII | CTCAG | 7 cut(s) | 125, 539, 752, 769, 1019, 1131, 1152 |
| BseNI | ACTGG | 3 cut(s) | 1095, 1266, 1637 |
| BseRI | GAGGAG | 2 cut(s) | 1142, 1603 |
| BseXI | GCAGC | 3 cut(s) | 734, 992, 1078 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1413 |
| BsiEI | CGRYCG | 1 cut(s) | 1413 |
| BsiHKAI | GWGCWC | 2 cut(s) | 42, 1185 |
| BsiSI | CCGG | 1 cut(s) | 43 |
| BslFI | GGGAC | 2 cut(s) | 702, 1114 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 933 |
| BsmAI | GTCTC | 2 cut(s) | 188, 1630 |
| BsmFI | GGGAC | 2 cut(s) | 702, 1114 |
| Bso31I | GGTCTC | 1 cut(s) | 1630 |
| Bsp1286I | GDGCHC | 2 cut(s) | 42, 1185 |
| Bsp13I | TCCGGA | 1 cut(s) | 42 |
| Bsp1407I | TGTACA | 1 cut(s) | 1494 |
| Bsp143I | GATC | 8 cut(s) | 375, 451, 511, 535, 760, 1251, 1384, 1410 |
| BspACI | CCGC | 1 cut(s) | 1272 |
| BspCNI | CTCAG | 7 cut(s) | 124, 538, 751, 768, 1020, 1132, 1153 |
| BspEI | TCCGGA | 1 cut(s) | 42 |
| BspLI | GGNNCC | 1 cut(s) | 762 |
| BspMAI | CTGCAG | 1 cut(s) | 1233 |
| BspPI | GGATC | 3 cut(s) | 755, 768, 1379 |
| BspQI | GCTCTTC | 1 cut(s) | 1173 |
| BspTI | CTTAAG | 1 cut(s) | 455 |
| BspTNI | GGTCTC | 1 cut(s) | 1630 |
| BsrGI | TGTACA | 1 cut(s) | 1494 |
| BsrI | ACTGG | 3 cut(s) | 1095, 1266, 1637 |
| BssECI | CCNNGG | 1 cut(s) | 900 |
| BssMI | GATC | 8 cut(s) | 375, 451, 511, 535, 760, 1251, 1384, 1410 |
| BssNAI | GTATAC | 1 cut(s) | 880 |
| BssT1I | CCWWGG | 1 cut(s) | 900 |
| Bst1107I | GTATAC | 1 cut(s) | 880 |
| Bst4CI | ACNGT | 1 cut(s) | 849 |
| Bst6I | CTCTTC | 4 cut(s) | 363, 635, 1173, 1283 |
| BstAFI | CTTAAG | 1 cut(s) | 455 |
| BstAUI | TGTACA | 1 cut(s) | 1494 |
| BstC8I | GCNNGC | 2 cut(s) | 1240, 1330 |
| BstDEI | CTNAG | 8 cut(s) | 111, 525, 738, 755, 810, 1028, 1140, 1161 |
| BstF5I | GGATG | 7 cut(s) | 229, 340, 556, 1099, 1240, 1273, 1423 |
| BstH2I | RGCGCY | 1 cut(s) | 83 |
| BstHHI | GCGC | 3 cut(s) | 82, 303, 556 |
| BstKTI | GATC | 8 cut(s) | 378, 454, 514, 538, 763, 1254, 1387, 1413 |
| BstMAI | GTCTC | 2 cut(s) | 188, 1630 |
| BstMBI | GATC | 8 cut(s) | 375, 451, 511, 535, 760, 1251, 1384, 1410 |
| BstMCI | CGRYCG | 1 cut(s) | 1413 |
| BstNSI | RCATGY | 1 cut(s) | 1332 |
| BstSFI | CTRYAG | 2 cut(s) | 572, 1229 |
| BstV1I | GCAGC | 3 cut(s) | 734, 992, 1078 |
| BstX2I | RGATCY | 2 cut(s) | 535, 760 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1365 |
| BstYI | RGATCY | 2 cut(s) | 535, 760 |
| BstZ17I | GTATAC | 1 cut(s) | 880 |
| Bsu36I | CCTNAGG | 1 cut(s) | 755 |
| BsuI | GTATCC | 2 cut(s) | 783, 1407 |
| BtsCI | GGATG | 7 cut(s) | 229, 340, 556, 1099, 1240, 1273, 1423 |
| BtsI | GCAGTG | 1 cut(s) | 990 |
| BtsIMutI | CAGTG | 2 cut(s) | 746, 990 |
| Cac8I | GCNNGC | 2 cut(s) | 1240, 1330 |
| CfoI | GCGC | 3 cut(s) | 82, 303, 556 |
| Cfr13I | GGNCC | 1 cut(s) | 402 |
| Csp6I | GTAC | 5 cut(s) | 383, 624, 1007, 1495, 1534 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1525, 1560 |
| CviAII | CATG | 6 cut(s) | 11, 125, 509, 681, 790, 1329 |
| CviQI | GTAC | 5 cut(s) | 383, 624, 1007, 1495, 1534 |
| DdeI | CTNAG | 8 cut(s) | 111, 525, 738, 755, 810, 1028, 1140, 1161 |
| DpnI | GATC | 8 cut(s) | 377, 453, 513, 537, 762, 1253, 1386, 1412 |
| DpnII | GATC | 8 cut(s) | 375, 451, 511, 535, 760, 1251, 1384, 1410 |
| DraI | TTTAAA | 4 cut(s) | 429, 964, 1155, 1405 |
| Eam1104I | CTCTTC | 4 cut(s) | 363, 635, 1173, 1283 |
| EarI | CTCTTC | 4 cut(s) | 363, 635, 1173, 1283 |
| Ecl136II | GAGCTC | 2 cut(s) | 40, 1183 |
| Eco130I | CCWWGG | 1 cut(s) | 900 |
| Eco24I | GRGCYC | 2 cut(s) | 42, 1185 |
| Eco31I | GGTCTC | 1 cut(s) | 1630 |
| Eco32I | GATATC | 1 cut(s) | 871 |
| Eco47I | GGWCC | 1 cut(s) | 402 |
| Eco47III | AGCGCT | 1 cut(s) | 81 |
| Eco53kI | GAGCTC | 2 cut(s) | 40, 1183 |
| Eco57I | CTGAAG | 3 cut(s) | 158, 456, 1547 |
| Eco81I | CCTNAGG | 1 cut(s) | 755 |
| EcoICRI | GAGCTC | 2 cut(s) | 40, 1183 |
| EcoRV | GATATC | 1 cut(s) | 871 |
| EcoT14I | CCWWGG | 1 cut(s) | 900 |
| EcoT38I | GRGCYC | 2 cut(s) | 42, 1185 |
| ErhI | CCWWGG | 1 cut(s) | 900 |
| FaeI | CATG | 6 cut(s) | 14, 128, 512, 684, 793, 1332 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 1645 |
| FaqI | GGGAC | 2 cut(s) | 702, 1114 |
| FatI | CATG | 6 cut(s) | 10, 124, 508, 680, 789, 1328 |
| FbaI | TGATCA | 3 cut(s) | 375, 511, 1251 |
| FblI | GTMKAC | 1 cut(s) | 879 |
| Fnu4HI | GCNGC | 3 cut(s) | 723, 981, 1067 |
| FokI | GGATG | 7 cut(s) | 236, 347, 563, 1106, 1247, 1280, 1430 |
| FriOI | GRGCYC | 2 cut(s) | 42, 1185 |
| Fsp4HI | GCNGC | 3 cut(s) | 723, 981, 1067 |
| FspBI | CTAG | 4 cut(s) | 467, 605, 786, 1352 |
| FspI | TGCGCA | 2 cut(s) | 302, 555 |
| GlaI | GCGC | 3 cut(s) | 81, 302, 555 |
| GluI | GCNGC | 3 cut(s) | 723, 981, 1067 |
| GsuI | CTGGAG | 1 cut(s) | 1654 |
| HaeII | RGCGCY | 1 cut(s) | 83 |
| HapII | CCGG | 1 cut(s) | 43 |
| HhaI | GCGC | 3 cut(s) | 82, 303, 556 |
| Hin1II | CATG | 6 cut(s) | 14, 128, 512, 684, 793, 1332 |
| Hin6I | GCGC | 3 cut(s) | 80, 301, 554 |
| HinP1I | GCGC | 3 cut(s) | 80, 301, 554 |
| HindIII | AAGCTT | 2 cut(s) | 92, 275 |
| HinfI | GANTC | 4 cut(s) | 181, 479, 794, 937 |
| HpaII | CCGG | 1 cut(s) | 43 |
| HphI | GGTGA | 2 cut(s) | 482, 1303 |
| Hpy166II | GTNNAC | 2 cut(s) | 880, 1495 |
| Hpy188III | TCNNGA | 5 cut(s) | 43, 395, 587, 866, 1445 |
| Hpy8I | GTNNAC | 2 cut(s) | 880, 1495 |
| HpyAV | CCTTC | 8 cut(s) | 355, 401, 415, 962, 970, 1126, 1429, 1522 |
| HpyCH4III | ACNGT | 1 cut(s) | 849 |
| HpyCH4IV | ACGT | 1 cut(s) | 385 |
| HpyCH4V | TGCA | 8 cut(s) | 58, 205, 684, 861, 1231, 1322, 1328, 1332 |
| HpyF3I | CTNAG | 8 cut(s) | 111, 525, 738, 755, 810, 1028, 1140, 1161 |
| HpySE526I | ACGT | 1 cut(s) | 385 |
| Hsp92II | CATG | 6 cut(s) | 14, 128, 512, 684, 793, 1332 |
| HspAI | GCGC | 3 cut(s) | 80, 301, 554 |
| Kpn2I | TCCGGA | 1 cut(s) | 42 |
| Ksp22I | TGATCA | 3 cut(s) | 375, 511, 1251 |
| Kzo9I | GATC | 8 cut(s) | 375, 451, 511, 535, 760, 1251, 1384, 1410 |
| LguI | GCTCTTC | 1 cut(s) | 1173 |
| LmnI | GCTCC | 2 cut(s) | 45, 1207 |
| Lsp1109I | GCAGC | 3 cut(s) | 734, 992, 1078 |
| LweI | GCATC | 3 cut(s) | 325, 541, 1225 |
| MaeI | CTAG | 4 cut(s) | 467, 605, 786, 1352 |
| MaeII | ACGT | 1 cut(s) | 385 |
| MaeIII | GTNAC | 5 cut(s) | 386, 889, 1217, 1504, 1555 |
| MalI | GATC | 8 cut(s) | 377, 453, 513, 537, 762, 1253, 1386, 1412 |
| MboI | GATC | 8 cut(s) | 375, 451, 511, 535, 760, 1251, 1384, 1410 |
| MfeI | CAATTG | 2 cut(s) | 630, 1016 |
| MflI | RGATCY | 2 cut(s) | 535, 760 |
| MhlI | GDGCHC | 2 cut(s) | 42, 1185 |
| MlyI | GAGTC | 2 cut(s) | 190, 931 |
| MroI | TCCGGA | 1 cut(s) | 42 |
| MseI | TTAA | 9 cut(s) | 240, 353, 428, 456, 614, 851, 963, 1154, 1404 |
| MspCI | CTTAAG | 1 cut(s) | 455 |
| MspI | CCGG | 1 cut(s) | 43 |
| MunI | CAATTG | 2 cut(s) | 630, 1016 |
| NdeII | GATC | 8 cut(s) | 375, 451, 511, 535, 760, 1251, 1384, 1410 |
| NlaIII | CATG | 6 cut(s) | 14, 128, 512, 684, 793, 1332 |
| NlaIV | GGNNCC | 1 cut(s) | 762 |
| NmuCI | GTSAC | 2 cut(s) | 889, 1504 |
| NsbI | TGCGCA | 2 cut(s) | 302, 555 |
| NspI | RCATGY | 1 cut(s) | 1332 |
| PaeI | GCATGC | 1 cut(s) | 1332 |
| PciSI | GCTCTTC | 1 cut(s) | 1173 |
| PfeI | GAWTC | 2 cut(s) | 479, 794 |
| PkrI | GCNGC | 3 cut(s) | 724, 982, 1068 |
| Ple19I | CGATCG | 1 cut(s) | 1413 |
| PleI | GAGTC | 2 cut(s) | 189, 931 |
| PpsI | GAGTC | 2 cut(s) | 189, 931 |
| Psp124BI | GAGCTC | 2 cut(s) | 42, 1185 |
| PspN4I | GGNNCC | 1 cut(s) | 762 |
| PspPI | GGNCC | 1 cut(s) | 402 |
| PstI | CTGCAG | 1 cut(s) | 1233 |
| PsuI | RGATCY | 2 cut(s) | 535, 760 |
| PvuI | CGATCG | 1 cut(s) | 1413 |
| RsaI | GTAC | 5 cut(s) | 384, 625, 1008, 1496, 1535 |
| RsaNI | GTAC | 5 cut(s) | 383, 624, 1007, 1495, 1534 |
| SacI | GAGCTC | 2 cut(s) | 42, 1185 |
| SapI | GCTCTTC | 1 cut(s) | 1173 |
| SaqAI | TTAA | 9 cut(s) | 240, 353, 428, 456, 614, 851, 963, 1154, 1404 |
| SatI | GCNGC | 3 cut(s) | 723, 981, 1067 |
| Sau3AI | GATC | 8 cut(s) | 375, 451, 511, 535, 760, 1251, 1384, 1410 |
| Sau96I | GGNCC | 1 cut(s) | 402 |
| SchI | GAGTC | 2 cut(s) | 190, 931 |
| SduI | GDGCHC | 2 cut(s) | 42, 1185 |
| SfaNI | GCATC | 3 cut(s) | 325, 541, 1225 |
| SfcI | CTRYAG | 2 cut(s) | 572, 1229 |
| SinI | GGWCC | 1 cut(s) | 402 |
| SmlI | CTYRAG | 2 cut(s) | 95, 455 |
| SmoI | CTYRAG | 2 cut(s) | 95, 455 |
| SphI | GCATGC | 1 cut(s) | 1332 |
| SsiI | CCGC | 1 cut(s) | 1272 |
| SspI | AATATT | 2 cut(s) | 695, 1172 |
| SspMI | CTAG | 4 cut(s) | 467, 605, 786, 1352 |
| SstI | GAGCTC | 2 cut(s) | 42, 1185 |
| StyI | CCWWGG | 1 cut(s) | 900 |
| TaaI | ACNGT | 1 cut(s) | 849 |
| TaiI | ACGT | 1 cut(s) | 388 |
| TaqI | TCGA | 4 cut(s) | 252, 873, 1413, 1541 |
| TatI | WGTACW | 4 cut(s) | 623, 1006, 1494, 1533 |
| TfiI | GAWTC | 2 cut(s) | 479, 794 |
| Tru1I | TTAA | 9 cut(s) | 240, 353, 428, 456, 614, 851, 963, 1154, 1404 |
| Tru9I | TTAA | 9 cut(s) | 240, 353, 428, 456, 614, 851, 963, 1154, 1404 |
| TscAI | CASTG | 2 cut(s) | 746, 990 |
| TseFI | GTSAC | 2 cut(s) | 889, 1504 |
| TseI | GCWGC | 3 cut(s) | 722, 980, 1066 |
| Tsp45I | GTSAC | 2 cut(s) | 889, 1504 |
| TspGWI | ACGGA | 1 cut(s) | 415 |
| TspRI | CASTG | 2 cut(s) | 746, 990 |
| Vha464I | CTTAAG | 1 cut(s) | 455 |
| VpaK11BI | GGWCC | 1 cut(s) | 402 |
| XapI | RAATTY | 5 cut(s) | 805, 958, 1110, 1421, 1440 |
| XceI | RCATGY | 1 cut(s) | 1332 |
| XmiI | GTMKAC | 1 cut(s) | 879 |
| XspI | CTAG | 4 cut(s) | 467, 605, 786, 1352 |