Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006925

Physical Location & Seq

Genomic Coordinates Forward (+)

73524393 .. 73541926

Gene Structure 17534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG426400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGAAGAAGAGTCGGTAGAAGTACGTGCTCTATACACTACACTTATGCGTAAGGAGAACAATAATCATGATGAGCTGATCAATGTACGATACCATCTTGAAAAGACCTTCTTAGAAAAAGAAGCCTTTTCAAAATCTGAAGATCTAAACAATGATCTTAAGAAAAGGCTAGGTGAGAGTGAATCCCAAAGAAAGGAGCTTGAAGAAAAGTATGATCGTAGTGAATCTAAGAAGAAAGAGCTACAGGAGGAGCTTGAGCGGATTGAAGCTCAGAAGATAGAGCTTCAGAAAAAGGATGATCAGAGTGAAGCAGAACTGCAGGAGGCTCATAAAGAGTTCATCAATGGACTAGGAGGTTTAAGAATTTGTTCTTTAATTGGTGTGAAGACAATGGGAGACCTCAGCAAAGAACCATTTCAAACTTCATGCACGAGACGATATTCTTTAAAAGAAGCAGATGGCAAGGCATCAACACTATATTCTCAGTGGCAGGGCAACCTTAGGGATCCAAACTGGTATCCTTTCATAACTAGCATGGATTCTTGTGGAAATTCCAAGCTAACAATCAATGAAGACGATGAAAAATTGAAACAGATAAAGGTGGACAATCTTGGTAGCGAAGTTTACAAGGCTCAACTTGATGTGAAGAAGACAAACCCGGATGAATTGGAACAGCAGCTTGATGTGAAGAAGAAAGACCCAGGTGACAGCATTAATGAGATTCAAAAGAAGTTAGAGGAGAAGGAAGATGAGTTGAGAGATTTAAAAGCTGATTTTGAATATTCAGAAGCTCTCAACTCTACACTATTTGTCAAGGAGCGTGAAAGTAATAATGAACTGCAGGATGCTCGCAAGGAGTTAATCAGGGGACTGGTTGATGACGGTTTTATTGGCGTGAAGAGAATGGGAGAGCTTTACATCACGCCTTTTGCAACTGCATGCAAGAGAGACCGTTCTATGCTAGAACCAGAGGTGTGGCAAGATTATCTTAGTGATCCAAGCTGGCATCCGTTTAAAGCAATCGAGGATGAATTTGGAAATCGGAAGGAAATTCTTGATGTAGAAGATGAAAAATTGAAGAGTATAAAGGGCGACGATGCAGTGTACAAGGCAGTCACAACTGCCTTGATGGAATTGAAGGAGTACAATTCGAGTGGAATGTATATGACAGATGAACTATGGAACTTTCAAAAAGGGAGGAGGGCAACACTACAGGAGGGATTATCATATATATTATTAAACTGGAGACCTCTGAAAAGGAAAAGAAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010569 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0046686 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1902679 GO:1903506 GO:1903507 GO:1905348 GO:1990904 GO:2000112 GO:2000113 GO:2000779 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

424

Amino Acids

49.55

Weight (kDa)

5.08

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	129 - 212	1.3e-19	XH domain
XH	PF03469	300 - 421	9.4e-35	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006925)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36270 FvH4_3g36300
rosa_chinensis	RchiOBHm_Chr5g0065081 RchiOBHm_Chr5g0065111
rosa_laevigata	RLG00000035750 RLG00000035757
rosa_multiflora	Rmu_sc0002915.1_g000011 Rmu_sc0002915.1_g000016 Rmu_sc0006219.1_g000001 Rmu_sc0006219.1_g000008
rosa_roxburghii	Rroxscaffold_1G00016210 Rroxscaffold_1G00016240
rosa_rugosa	Rorug05G0367600 Rorug05G0367900 Rorug05G0368000
rosa_samantha	Rh5AG426200 Rh5AG426400 Rh5AG426500 Rh5BG441400 Rh5BG441700 Rh5CG464100 Rh5CG464300 Rh5DG453900 Rh5DG454200
rosa_wichuraiana	Rw5G040040 Rw5G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	259
AciI	CCGC	1 cut(s)	259
AclWI	GGATC	3 cut(s)	500, 513, 989
AcsI	RAATTY	5 cut(s)	363, 550, 1031, 1050, 1269
AcuI	CTGAAG	2 cut(s)	159, 269
AfaI	GTAC	4 cut(s)	24, 87, 1106, 1145
AfiI	CCNNNNNNNGG	1 cut(s)	193
AflII	CTTAAG	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	700
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	4 cut(s)	390, 427, 942, 1240
AlwI	GGATC	3 cut(s)	500, 513, 989
ApeKI	GCWGC	1 cut(s)	676
ApoI	RAATTY	5 cut(s)	363, 550, 1031, 1050, 1269
AseI	ATTAAT	1 cut(s)	714
Asp700I	GAANNNNTTC	2 cut(s)	367, 414
AsuC2I	CCSGG	1 cut(s)	659
AsuHPI	GGTGA	2 cut(s)	185, 716
AxyI	CCTNAGG	1 cut(s)	500
BamHI	GGATCC	1 cut(s)	505
BauI	CACGAG	1 cut(s)	430
BbsI	GAAGAC	3 cut(s)	392, 579, 656
Bbv12I	GWGCWC	1 cut(s)	31
BbvCI	CCTCAGC	1 cut(s)	401
BbvI	GCAGC	1 cut(s)	688
BccI	CCATC	3 cut(s)	102, 452, 1123
BcgI	CGANNNNNNTGC	2 cut(s)	830, 864
BciT130I	CCWGG	1 cut(s)	702
BciVI	GTATCC	1 cut(s)	528
BclI	TGATCA	2 cut(s)	78, 298
BcnI	CCSGG	1 cut(s)	659
BcoDI	GTCTC	4 cut(s)	390, 427, 942, 1240
BfaI	CTAG	4 cut(s)	170, 350, 531, 962
BfmI	CTRYAG	4 cut(s)	242, 317, 839, 1211
BfrI	CTTAAG	1 cut(s)	158
BfuI	GTATCC	1 cut(s)	528
BglII	AGATCT	1 cut(s)	142
BisI	GCNGC	1 cut(s)	677
BlsI	GCNGC	1 cut(s)	678
Bme1390I	CCNGG	2 cut(s)	659, 702
BmiI	GGNNCC	1 cut(s)	507
BmrFI	CCNGG	2 cut(s)	659, 702
BmsI	GCATC	4 cut(s)	476, 835, 1015, 1087
BpiI	GAAGAC	3 cut(s)	392, 579, 656
BpmI	CTGGAG	1 cut(s)	1264
Bpu10I	CCTNAGC	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	659
BsaAI	YACGTR	1 cut(s)	26
BsaI	GGTCTC	3 cut(s)	390, 942, 1240
BsaJI	CCNNGG	1 cut(s)	700
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse1I	ACTGG	3 cut(s)	518, 876, 1247
Bse21I	CCTNAGG	1 cut(s)	500
BseBI	CCWGG	1 cut(s)	702
BseDI	CCNNGG	1 cut(s)	700
BseGI	GGATG	5 cut(s)	301, 667, 850, 1006, 1033
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	3 cut(s)	284, 415, 497
BseNI	ACTGG	3 cut(s)	518, 876, 1247
BseRI	GAGGAG	3 cut(s)	263, 752, 1213
BseXI	GCAGC	1 cut(s)	688
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	659
BslFI	GGGAC	1 cut(s)	882
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	4 cut(s)	390, 427, 942, 1240
BsmBI	CGTCTC	1 cut(s)	427
BsmFI	GGGAC	1 cut(s)	882
Bso31I	GGTCTC	3 cut(s)	390, 942, 1240
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp1407I	TGTACA	1 cut(s)	1104
Bsp143I	GATC	7 cut(s)	78, 142, 154, 214, 298, 505, 994
BspACI	CCGC	1 cut(s)	259
BspCNI	CTCAG	3 cut(s)	283, 414, 496
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	507
BspMAI	CTGCAG	2 cut(s)	321, 843
BspPI	GGATC	3 cut(s)	500, 513, 989
BspTI	CTTAAG	1 cut(s)	158
BspTNI	GGTCTC	3 cut(s)	390, 942, 1240
BsrBI	CCGCTC	1 cut(s)	259
BsrGI	TGTACA	1 cut(s)	1104
BsrI	ACTGG	3 cut(s)	518, 876, 1247
BssECI	CCNNGG	1 cut(s)	700
BssMI	GATC	7 cut(s)	78, 142, 154, 214, 298, 505, 994
BssSI	CACGAG	1 cut(s)	430
Bst2BI	CACGAG	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	702
Bst4CI	ACNGT	2 cut(s)	884, 953
Bst6I	CTCTTC	3 cut(s)	3, 893, 1073
BstAFI	CTTAAG	1 cut(s)	158
BstAUI	TGTACA	1 cut(s)	1104
BstBAI	YACGTR	1 cut(s)	26
BstC8I	GCNNGC	3 cut(s)	850, 940, 1004
BstDEI	CTNAG	7 cut(s)	112, 228, 270, 401, 483, 500, 989
BstF5I	GGATG	5 cut(s)	301, 667, 850, 1006, 1033
BstKTI	GATC	7 cut(s)	81, 145, 157, 217, 301, 508, 997
BstMAI	GTCTC	4 cut(s)	390, 427, 942, 1240
BstMBI	GATC	7 cut(s)	78, 142, 154, 214, 298, 505, 994
BstNI	CCWGG	1 cut(s)	702
BstNSI	RCATGY	1 cut(s)	942
BstSCI	CCNGG	2 cut(s)	657, 700
BstSFI	CTRYAG	4 cut(s)	242, 317, 839, 1211
BstV1I	GCAGC	1 cut(s)	688
BstV2I	GAAGAC	3 cut(s)	392, 579, 656
BstX2I	RGATCY	2 cut(s)	142, 505
BstXI	CCANNNNNNTGG	1 cut(s)	975
BstYI	RGATCY	2 cut(s)	142, 505
Bsu36I	CCTNAGG	1 cut(s)	500
BsuI	GTATCC	1 cut(s)	528
BtsCI	GGATG	5 cut(s)	301, 667, 850, 1006, 1033
BtsI	GCAGTG	1 cut(s)	1107
BtsIMutI	CAGTG	2 cut(s)	491, 1107
Cac8I	GCNNGC	3 cut(s)	850, 940, 1004
CciI	TCATGA	1 cut(s)	67
Csp6I	GTAC	4 cut(s)	23, 86, 1105, 1144
CspCI	CAANNNNNGTGG	2 cut(s)	1135, 1170
CviAII	CATG	4 cut(s)	68, 426, 535, 939
CviQI	GTAC	4 cut(s)	23, 86, 1105, 1144
DdeI	CTNAG	7 cut(s)	112, 228, 270, 401, 483, 500, 989
DpnI	GATC	7 cut(s)	80, 144, 156, 216, 300, 507, 996
DpnII	GATC	7 cut(s)	78, 142, 154, 214, 298, 505, 994
DraI	TTTAAA	3 cut(s)	447, 765, 1015
Eam1104I	CTCTTC	3 cut(s)	3, 893, 1073
EarI	CTCTTC	3 cut(s)	3, 893, 1073
Eco31I	GGTCTC	3 cut(s)	390, 942, 1240
Eco57I	CTGAAG	2 cut(s)	159, 269
Eco81I	CCTNAGG	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	700
Esp3I	CGTCTC	1 cut(s)	427
FaeI	CATG	4 cut(s)	71, 429, 538, 942
FalI	AAGNNNNNCTT	4 cut(s)	95, 127, 972, 1004
FaqI	GGGAC	1 cut(s)	882
FatI	CATG	4 cut(s)	67, 425, 534, 938
FbaI	TGATCA	2 cut(s)	78, 298
Fnu4HI	GCNGC	1 cut(s)	677
FokI	GGATG	5 cut(s)	308, 674, 857, 993, 1040
Fsp4HI	GCNGC	1 cut(s)	677
FspBI	CTAG	4 cut(s)	170, 350, 531, 962
GluI	GCNGC	1 cut(s)	677
GsuI	CTGGAG	1 cut(s)	1264
HapII	CCGG	1 cut(s)	659
Hin1II	CATG	4 cut(s)	71, 429, 538, 942
HinfI	GANTC	5 cut(s)	11, 182, 224, 539, 721
HpaII	CCGG	1 cut(s)	659
HphI	GGTGA	2 cut(s)	185, 716
Hpy166II	GTNNAC	3 cut(s)	604, 625, 1105
Hpy188I	TCNGA	7 cut(s)	139, 273, 288, 303, 787, 1044, 1254
Hpy188III	TCNNGA	3 cut(s)	68, 98, 1055
Hpy8I	GTNNAC	3 cut(s)	604, 625, 1105
Hpy99I	CGWCG	1 cut(s)	1097
HpyAV	CCTTC	4 cut(s)	118, 736, 1039, 1132
HpyCH4III	ACNGT	2 cut(s)	884, 953
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	7 cut(s)	319, 429, 841, 932, 938, 942, 1100
HpyF3I	CTNAG	7 cut(s)	112, 228, 270, 401, 483, 500, 989
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	4 cut(s)	71, 429, 538, 942
Ksp22I	TGATCA	2 cut(s)	78, 298
Kzo9I	GATC	7 cut(s)	78, 142, 154, 214, 298, 505, 994
LmnI	GCTCC	3 cut(s)	196, 250, 817
Lsp1109I	GCAGC	1 cut(s)	688
LweI	GCATC	4 cut(s)	476, 835, 1015, 1087
MaeI	CTAG	4 cut(s)	170, 350, 531, 962
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	2 cut(s)	704, 1114
MalI	GATC	7 cut(s)	80, 144, 156, 216, 300, 507, 996
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	7 cut(s)	78, 142, 154, 214, 298, 505, 994
MflI	RGATCY	2 cut(s)	142, 505
MhlI	GDGCHC	1 cut(s)	31
MlyI	GAGTC	1 cut(s)	20
MroXI	GAANNNNTTC	2 cut(s)	367, 414
MseI	TTAA	9 cut(s)	159, 359, 374, 446, 714, 764, 860, 1014, 1238
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	1 cut(s)	659
MspR9I	CCNGG	2 cut(s)	659, 702
MvaI	CCWGG	1 cut(s)	702
NciI	CCSGG	1 cut(s)	659
NdeII	GATC	7 cut(s)	78, 142, 154, 214, 298, 505, 994
NlaIII	CATG	4 cut(s)	71, 429, 538, 942
NlaIV	GGNNCC	1 cut(s)	507
NmuCI	GTSAC	2 cut(s)	704, 1114
NspI	RCATGY	1 cut(s)	942
PaeI	GCATGC	1 cut(s)	942
PagI	TCATGA	1 cut(s)	67
PdmI	GAANNNNTTC	2 cut(s)	367, 414
PfeI	GAWTC	4 cut(s)	182, 224, 539, 721
PkrI	GCNGC	1 cut(s)	678
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Ppu21I	YACGTR	1 cut(s)	26
PshBI	ATTAAT	1 cut(s)	714
Psp6I	CCWGG	1 cut(s)	700
PspGI	CCWGG	1 cut(s)	700
PspN4I	GGNNCC	1 cut(s)	507
PstI	CTGCAG	2 cut(s)	321, 843
PsuI	RGATCY	2 cut(s)	142, 505
RsaI	GTAC	4 cut(s)	24, 87, 1106, 1145
RsaNI	GTAC	4 cut(s)	23, 86, 1105, 1144
SaqAI	TTAA	9 cut(s)	159, 359, 374, 446, 714, 764, 860, 1014, 1238
SatI	GCNGC	1 cut(s)	677
Sau3AI	GATC	7 cut(s)	78, 142, 154, 214, 298, 505, 994
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	659, 702
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	4 cut(s)	476, 835, 1015, 1087
SfcI	CTRYAG	4 cut(s)	242, 317, 839, 1211
SmlI	CTYRAG	2 cut(s)	158, 254
SmoI	CTYRAG	2 cut(s)	158, 254
SphI	GCATGC	1 cut(s)	942
SsiI	CCGC	1 cut(s)	259
SspI	AATATT	1 cut(s)	782
SspMI	CTAG	4 cut(s)	170, 350, 531, 962
StyD4I	CCNGG	2 cut(s)	657, 700
TaaI	ACNGT	2 cut(s)	884, 953
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	2 cut(s)	1023, 1151
TatI	WGTACW	2 cut(s)	1104, 1143
TfiI	GAWTC	4 cut(s)	182, 224, 539, 721
Tru1I	TTAA	9 cut(s)	159, 359, 374, 446, 714, 764, 860, 1014, 1238
Tru9I	TTAA	9 cut(s)	159, 359, 374, 446, 714, 764, 860, 1014, 1238
TscAI	CASTG	2 cut(s)	491, 1107
TseFI	GTSAC	2 cut(s)	704, 1114
TseI	GCWGC	1 cut(s)	676
Tsp45I	GTSAC	2 cut(s)	704, 1114
TspGWI	ACGGA	1 cut(s)	999
TspRI	CASTG	2 cut(s)	491, 1107
Vha464I	CTTAAG	1 cut(s)	158
VspI	ATTAAT	1 cut(s)	714
XapI	RAATTY	5 cut(s)	363, 550, 1031, 1050, 1269
XceI	RCATGY	1 cut(s)	942
XmnI	GAANNNNTTC	2 cut(s)	367, 414
XspI	CTAG	4 cut(s)	170, 350, 531, 962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.