Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006219.1

Orthogroup ID

OG0006925

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2501

Gene Structure 2501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006219.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 721 bp

cccaggtgacagcattaatgaaattcaaaagaagttagaggagaaggaagatgagttgagagatttaaaagctgattttgaatattcagaagctctcaactctacactatttgtcaaggagcgggaaagtaataatgaactgcaggatgctcgcaaggagttaatcaggggactggtggatgacggttttattggcgtgaagagaatgggagagcttgacatcacgccttttgcaactgcatgcaagagagaccattctatgctagaaccagaggtgtggcaagattatcttagtgatccaagctggcatccgtttaaagcaatcgaggatgaatttggaaatcggaaggaaattcttgatgtagaagatgaaaaattgaagagtataaagggcgacgatgcagtgtacaaggcagtcacaactgccttgatggaattgaaggagtacaattcgagtggaattctttgcaaggatacactggttgttgatgaacttaaccttttcccagaaatgattagcagaggcatagctccaaacttgtatgatgcagagaggatggcggctcaatttgaacaacagttagaccgtgctaaaggaggaaaacgaaaagtgactagtagacaggaaatggcagttcggtgtctgattgggacgcaccttacctttccggaaagggaatcgcgccagaaacaagactcattgctttgctatgagctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

239

Amino Acids

27.49

Weight (kDa)

4.8

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006925)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36270 FvH4_3g36300
rosa_chinensis	RchiOBHm_Chr5g0065081 RchiOBHm_Chr5g0065111
rosa_laevigata	RLG00000035750 RLG00000035757
rosa_multiflora	Rmu_sc0002915.1_g000011 Rmu_sc0002915.1_g000016 Rmu_sc0006219.1_g000001 Rmu_sc0006219.1_g000008
rosa_roxburghii	Rroxscaffold_1G00016210 Rroxscaffold_1G00016240
rosa_rugosa	Rorug05G0367600 Rorug05G0367900 Rorug05G0368000
rosa_samantha	Rh5AG426200 Rh5AG426400 Rh5AG426500 Rh5BG441400 Rh5BG441700 Rh5CG464100 Rh5CG464300 Rh5DG453900 Rh5DG454200
rosa_wichuraiana	Rw5G040040 Rw5G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	620
AccII	CGCG	1 cut(s)	683
AccIII	TCCGGA	1 cut(s)	668
AciI	CCGC	2 cut(s)	122, 561
AclWI	GGATC	1 cut(s)	291
AcsI	RAATTY	4 cut(s)	22, 333, 352, 460
AfaI	GTAC	2 cut(s)	408, 447
AgsI	TTSAA	5 cut(s)	27, 81, 380, 440, 573
AhlI	ACTAGT	1 cut(s)	615
AjnI	CCWGG	1 cut(s)	2
AluBI	AGCT	6 cut(s)	72, 93, 215, 304, 531, 716
AluI	AGCT	6 cut(s)	72, 93, 215, 304, 531, 716
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	1 cut(s)	291
Aor13HI	TCCGGA	1 cut(s)	668
ApoI	RAATTY	4 cut(s)	22, 333, 352, 460
AseI	ATTAAT	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	685
AsuHPI	GGTGA	1 cut(s)	18
BaeI	ACNNNNGTAYC	2 cut(s)	466, 499
BccI	CCATC	2 cut(s)	425, 551
BcgI	CGANNNNNNTGC	2 cut(s)	132, 166
BciT130I	CCWGG	1 cut(s)	4
BciVI	GTATCC	1 cut(s)	467
BcoDI	GTCTC	1 cut(s)	244
BcuI	ACTAGT	1 cut(s)	615
BfaI	CTAG	2 cut(s)	264, 616
BfmI	CTRYAG	2 cut(s)	141, 717
BfuI	GTATCC	1 cut(s)	467
BisI	GCNGC	1 cut(s)	562
BlsI	GCNGC	1 cut(s)	563
Bme1390I	CCNGG	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	4
BmsI	GCATC	4 cut(s)	137, 317, 389, 536
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	2
BsaWI	WCCGGW	1 cut(s)	668
Bse1I	ACTGG	2 cut(s)	178, 484
Bse3DI	GCAATG	1 cut(s)	699
BseAI	TCCGGA	1 cut(s)	668
BseBI	CCWGG	1 cut(s)	4
BseDI	CCNNGG	1 cut(s)	2
BseGI	GGATG	5 cut(s)	152, 185, 308, 335, 562
BseMI	GCAATG	1 cut(s)	699
BseNI	ACTGG	2 cut(s)	178, 484
BseRI	GAGGAG	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	683
BsiSI	CCGG	1 cut(s)	669
BslFI	GGGAC	2 cut(s)	184, 665
BsmAI	GTCTC	1 cut(s)	244
BsmFI	GGGAC	2 cut(s)	184, 665
Bso31I	GGTCTC	1 cut(s)	244
Bsp13I	TCCGGA	1 cut(s)	668
Bsp1407I	TGTACA	1 cut(s)	406
Bsp143I	GATC	1 cut(s)	296
BspACI	CCGC	2 cut(s)	122, 561
BspEI	TCCGGA	1 cut(s)	668
BspFNI	CGCG	1 cut(s)	683
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	1 cut(s)	291
BspTNI	GGTCTC	1 cut(s)	244
BsrBI	CCGCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	699
BsrGI	TGTACA	1 cut(s)	406
BsrI	ACTGG	2 cut(s)	178, 484
BssECI	CCNNGG	1 cut(s)	2
BssMI	GATC	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	4
Bst4CI	ACNGT	3 cut(s)	186, 580, 588
Bst6I	CTCTTC	2 cut(s)	195, 375
BstAUI	TGTACA	1 cut(s)	406
BstC8I	GCNNGC	3 cut(s)	152, 242, 306
BstDEI	CTNAG	1 cut(s)	291
BstF5I	GGATG	5 cut(s)	152, 185, 308, 335, 562
BstFNI	CGCG	1 cut(s)	683
BstHHI	GCGC	1 cut(s)	685
BstKTI	GATC	1 cut(s)	299
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	296
BstNI	CCWGG	1 cut(s)	4
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	2
BstSFI	CTRYAG	2 cut(s)	141, 717
BstUI	CGCG	1 cut(s)	683
BstXI	CCANNNNNNTGG	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	467
BtsCI	GGATG	5 cut(s)	152, 185, 308, 335, 562
BtsI	GCAGTG	1 cut(s)	409
BtsIMutI	CAGTG	2 cut(s)	409, 477
Cac8I	GCNNGC	3 cut(s)	152, 242, 306
CfoI	GCGC	1 cut(s)	685
CseI	GACGC	1 cut(s)	662
Csp6I	GTAC	2 cut(s)	407, 446
CspCI	CAANNNNNGTGG	2 cut(s)	437, 472
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	7 cut(s)	72, 93, 215, 304, 531, 564, 716
CviKI_1	RGCY	7 cut(s)	72, 93, 215, 304, 531, 564, 716
CviQI	GTAC	2 cut(s)	407, 446
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	1 cut(s)	298
DpnII	GATC	1 cut(s)	296
DraI	TTTAAA	2 cut(s)	67, 317
Eam1104I	CTCTTC	2 cut(s)	195, 375
EarI	CTCTTC	2 cut(s)	195, 375
Eco31I	GGTCTC	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	2
FaeI	CATG	1 cut(s)	244
FaiI	YATR	6 cut(s)	242, 261, 387, 528, 544, 712
FalI	AAGNNNNNCTT	2 cut(s)	274, 306
FaqI	GGGAC	2 cut(s)	184, 665
FatI	CATG	1 cut(s)	240
FauI	CCCGC	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	620
Fnu4HI	GCNGC	1 cut(s)	562
FokI	GGATG	5 cut(s)	159, 192, 295, 342, 569
Fsp4HI	GCNGC	1 cut(s)	562
FspBI	CTAG	2 cut(s)	264, 616
GlaI	GCGC	1 cut(s)	684
GluI	GCNGC	1 cut(s)	562
HapII	CCGG	1 cut(s)	669
HgaI	GACGC	1 cut(s)	662
HhaI	GCGC	1 cut(s)	685
Hin1II	CATG	1 cut(s)	244
Hin6I	GCGC	1 cut(s)	683
HinP1I	GCGC	1 cut(s)	683
HinfI	GANTC	2 cut(s)	678, 696
HpaII	CCGG	1 cut(s)	669
HphI	GGTGA	1 cut(s)	18
Hpy166II	GTNNAC	2 cut(s)	407, 621
Hpy188I	TCNGA	3 cut(s)	89, 346, 646
Hpy188III	TCNNGA	2 cut(s)	357, 669
Hpy8I	GTNNAC	2 cut(s)	407, 621
Hpy99I	CGWCG	1 cut(s)	399
HpyAV	CCTTC	3 cut(s)	38, 341, 434
HpyCH4III	ACNGT	3 cut(s)	186, 580, 588
HpyCH4V	TGCA	7 cut(s)	143, 234, 240, 244, 402, 469, 549
HpyF3I	CTNAG	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	244
HspAI	GCGC	1 cut(s)	683
Kpn2I	TCCGGA	1 cut(s)	668
Kzo9I	GATC	1 cut(s)	296
LmnI	GCTCC	2 cut(s)	119, 536
LweI	GCATC	4 cut(s)	137, 317, 389, 536
MaeI	CTAG	2 cut(s)	264, 616
MaeIII	GTNAC	3 cut(s)	6, 416, 611
MalI	GATC	1 cut(s)	298
MbiI	CCGCTC	1 cut(s)	122
MboI	GATC	1 cut(s)	296
MboII	GAAGA	4 cut(s)	60, 212, 378, 392
MluCI	AATT	8 cut(s)	22, 333, 352, 375, 435, 449, 460, 567
MlyI	GAGTC	1 cut(s)	690
MnlI	CCTC	6 cut(s)	32, 266, 320, 516, 547, 591
MroI	TCCGGA	1 cut(s)	668
MseI	TTAA	5 cut(s)	16, 66, 162, 316, 496
MspI	CCGG	1 cut(s)	669
MspR9I	CCNGG	1 cut(s)	4
MvaI	CCWGG	1 cut(s)	4
MvnI	CGCG	1 cut(s)	683
NdeII	GATC	1 cut(s)	296
NlaIII	CATG	1 cut(s)	244
NmuCI	GTSAC	3 cut(s)	6, 416, 611
NspI	RCATGY	1 cut(s)	244
PaeI	GCATGC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	678
PkrI	GCNGC	1 cut(s)	563
PleI	GAGTC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	690
PshBI	ATTAAT	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	2
PspGI	CCWGG	1 cut(s)	2
PstI	CTGCAG	1 cut(s)	145
RsaI	GTAC	2 cut(s)	408, 447
RsaNI	GTAC	2 cut(s)	407, 446
SaqAI	TTAA	5 cut(s)	16, 66, 162, 316, 496
SatI	GCNGC	1 cut(s)	562
Sau3AI	GATC	1 cut(s)	296
SchI	GAGTC	1 cut(s)	690
ScrFI	CCNGG	1 cut(s)	4
SfaNI	GCATC	4 cut(s)	137, 317, 389, 536
SfcI	CTRYAG	2 cut(s)	141, 717
SpeI	ACTAGT	1 cut(s)	615
SphI	GCATGC	1 cut(s)	244
Sse9I	AATT	8 cut(s)	22, 333, 352, 375, 435, 449, 460, 567
SsiI	CCGC	2 cut(s)	122, 561
SspI	AATATT	1 cut(s)	84
SspMI	CTAG	2 cut(s)	264, 616
StyD4I	CCNGG	1 cut(s)	2
TaaI	ACNGT	3 cut(s)	186, 580, 588
TaqI	TCGA	2 cut(s)	325, 453
TasI	AATT	8 cut(s)	22, 333, 352, 375, 435, 449, 460, 567
TatI	WGTACW	2 cut(s)	406, 445
TauI	GCSGC	1 cut(s)	564
TfiI	GAWTC	1 cut(s)	678
Tru1I	TTAA	5 cut(s)	16, 66, 162, 316, 496
Tru9I	TTAA	5 cut(s)	16, 66, 162, 316, 496
TscAI	CASTG	2 cut(s)	409, 484
TseFI	GTSAC	3 cut(s)	6, 416, 611
Tsp45I	GTSAC	3 cut(s)	6, 416, 611
TspDTI	ATGAA	5 cut(s)	34, 151, 346, 385, 505
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	2 cut(s)	409, 484
VspI	ATTAAT	1 cut(s)	16
XapI	RAATTY	4 cut(s)	22, 333, 352, 460
XceI	RCATGY	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	620
XspI	CTAG	2 cut(s)	264, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.