Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006925

Physical Location & Seq

Genomic Coordinates Forward (+)

71005546 .. 71010023

Gene Structure 4478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34101

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1926 bp

ATGGATATAGGAAAATTGCAACAAAATGTACGTCATCTGACTCATGTCTTTGAAGAGGCCTTCTTAGAGCAGAGAAGAGTCTTTTCAAAATCCAAAGCTCAAATAGATGAACTTAAGAAAAAGCTTGAGCAGACAAGATGCCAACAGAAAGAGCTCGAGGAAAAACTTGAGAAGAGTGAAGCTCAAAATGAAGATCTTCAGAAGAAGCATGATCACAGTGAAGCTCAGAGGAAAGAACTTATGAAAAGGGATGAAATGAGTGAAGCTAATATGAAAGAGCTCCGGAAAAAGATTGTGCATAGTGAAGCTGATATGAAAGCGCTTCTGAAAAAGCTTGAGTATATTGAGGCTCAGAAAAAAGAGCATGAGAAAACTGAAAGAGCTCAAAAGGAAGAACTTGCTAAAAAATTGCTTCAGCAGAGTCTCACTCAAAAAAAGAAATTGCAACTTATGTTCAGCTTGGATGATAATAAGGCTATTAAAGAGCTATTTGAGGAAAAGAAAAAGAATGAGAAGCTTGATGGGGAATTGAATGAGTTGCGCAACCATCATAATCTCCTGCTTGAACTAAAGGATGCTGTTCTGAATAAGTTAAAGAAGAAGGAAGAGGAGTTGATCAATGTACGTTACCTTCTTGAACAGACCTTCTTGGAGAAAGAAGCCTTTTTAAAATCTGAAGCTCTAAAGAATGATCTTAAGAAAATGCTAGGGGAGAGTGAATCTGAAAGAAATGAACTTAAAAAAAAGCATGATCATTGTGAAGCTCAGAAGAAAGATCTTCTGAAAAAGGATGATCAGAGTGAAGCCGAACTTCAGGAGGCTCGTCAAGAGTTCATCAATGGACTAGGGGGATTAAACTTCTGTACTACAATTGGCGTGAAGAGAATGGGAGAGCTTGACAACAAACCATTTCAAACTTCATGCAAGAGACAATATTCTAAAAAAGAAGCAGATGACAAGGCAGCAACACTATATTCTCAGTGGGAGGGCTACCTCAGGGATCCAAATTGGTATCCATTCACAACTAGCATGGATTCTTGTGGAAATTCTAAGCTGACTATCAACGAAGAAGATGAAAAATTGAAACAGTTAAAGGTCTGCAATCTTGATATCGAAGTATACAAGGCTGTGACAACTGCCTTGGTGGAATTGAACAGCTATAATACCAATGGTAGGACTCCAATAGCAGAATTATGGAATTTTAAAGAAGGGAGGAAGGCAACAGTGAAAGAGGGAATATCGTATGTACTGAACCAATTGAAACTGCTGAGAAAGAGGGTTGGTAAAATGCTGTCAGAACAAAAGCAGCTTGATATGAAGAAGAAAAAACCGGATGATGGGACTAATGAAATTCAAAAGAAGTTAGAGGAGAAGGAAGCTGAGTTGAAAGATTTAAAAGCTGAGTTGAAAGATTTAAAAGCTGAGTTAGAATATTCAGAAGAGCTCAACTCTACACTATTTGTCAAGGAGCGTGAAAGTAACGATGAACTGCAGGATGCTCGCAAGGAGTTAATCAGGGAACTGGTGGATGGCGGTTTTATTGGCGTGAAGAGAATGGGAGAGATTGACATCACCCCTTTTGCAACTGCATGCAAGAGAGATAATTCTATGCTAGAACCAGAGGTGTGGCAGGATTGTATTAGTGATCCAAGCTGGTATCCTTTTAAACCGATCGAGGATGAATTTGGAAATCGGAAGGAAATTCTTGATGTAGAAGATGAAAAATTGAAGTTTATAAAGGGCAACGATGGAGTGTACAAGGCAGTCACAACTGCCTTGATGGAACTGAAGGAGTACAATTCGAGTGGTATGTATGTAACAGAAGAACTATGGAACTTTCAAAAAGGGAGGAGGGCAACACTACAAGAGGGATTATCATATATACTATTGAACTGGAGACCTCTGAAAAGGAAAAGAAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

641

Amino Acids

75.23

Weight (kDa)

7.14

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XH	PF03469	294 - 425	8.1e-45	XH domain
XH	PF03469	517 - 638	2.5e-33	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006925)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36270 FvH4_3g36300
rosa_chinensis	RchiOBHm_Chr5g0065081 RchiOBHm_Chr5g0065111
rosa_laevigata	RLG00000035750 RLG00000035757
rosa_multiflora	Rmu_sc0002915.1_g000011 Rmu_sc0002915.1_g000016 Rmu_sc0006219.1_g000001 Rmu_sc0006219.1_g000008
rosa_roxburghii	Rroxscaffold_1G00016210 Rroxscaffold_1G00016240
rosa_rugosa	Rorug05G0367600 Rorug05G0367900 Rorug05G0368000
rosa_samantha	Rh5AG426200 Rh5AG426400 Rh5AG426500 Rh5BG441400 Rh5BG441700 Rh5CG464100 Rh5CG464300 Rh5DG453900 Rh5DG454200
rosa_wichuraiana	Rw5G040040 Rw5G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1736
Acc16I	TGCGCA	1 cut(s)	542
AccI	GTMKAC	1 cut(s)	1119
AccIII	TCCGGA	1 cut(s)	282
AciI	CCGC	1 cut(s)	1533
AclWI	GGATC	3 cut(s)	995, 1008, 1640
AcsI	RAATTY	6 cut(s)	1045, 1198, 1350, 1682, 1701, 1920
AcuI	CTGAAG	5 cut(s)	182, 398, 696, 797, 1808
AfaI	GTAC	6 cut(s)	30, 624, 865, 1248, 1757, 1796
AfeI	AGCGCT	1 cut(s)	321
AfiI	CCNNNNNNNGG	2 cut(s)	1173, 1337
AflII	CTTAAG	2 cut(s)	113, 695
Alw21I	GWGCWC	4 cut(s)	156, 282, 385, 1446
Alw26I	GTCTC	3 cut(s)	428, 922, 1891
AlwI	GGATC	3 cut(s)	995, 1008, 1640
Ama87I	CYCGRG	1 cut(s)	155
Aor13HI	TCCGGA	1 cut(s)	282
Aor51HI	AGCGCT	1 cut(s)	321
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	2 cut(s)	962, 1306
ApoI	RAATTY	6 cut(s)	1045, 1198, 1350, 1682, 1701, 1920
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
Asp700I	GAANNNNTTC	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	322, 543
AsuHPI	GGTGA	1 cut(s)	1564
AvaI	CYCGRG	1 cut(s)	155
AxyI	CCTNAGG	1 cut(s)	995
BamHI	GGATCC	1 cut(s)	1000
BanII	GRGCYC	4 cut(s)	156, 282, 385, 1446
BarI	GAAGNNNNNNTAC	2 cut(s)	615, 647
Bbv12I	GWGCWC	4 cut(s)	156, 282, 385, 1446
BbvI	GCAGC	2 cut(s)	974, 1318
BccI	CCATC	6 cut(s)	515, 555, 1331, 1523, 1742, 1774
BcgI	CGANNNNNNTGC	2 cut(s)	1481, 1515
BciVI	GTATCC	2 cut(s)	1023, 1668
BclI	TGATCA	4 cut(s)	211, 615, 751, 793
BcoDI	GTCTC	3 cut(s)	428, 922, 1891
BfaI	CTAG	4 cut(s)	707, 845, 1026, 1613
BfmI	CTRYAG	1 cut(s)	1490
BfoI	RGCGCY	1 cut(s)	323
BfrI	CTTAAG	2 cut(s)	113, 695
BfuI	GTATCC	2 cut(s)	1023, 1668
BglII	AGATCT	2 cut(s)	193, 775
BisI	GCNGC	2 cut(s)	963, 1307
BlsI	GCNGC	2 cut(s)	964, 1308
BmeT110I	CYCGRG	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	1002
BmsI	GCATC	3 cut(s)	128, 565, 1486
BoxI	GACNNNNGTC	1 cut(s)	44
BplI	GAGNNNNNCTC	6 cut(s)	166, 198, 412, 444, 1433, 1465
BpmI	CTGGAG	1 cut(s)	1915
BpuEI	CTTGAG	3 cut(s)	146, 188, 356
BsaBI	GATNNNNATC	1 cut(s)	1568
BsaI	GGTCTC	1 cut(s)	1891
BsaJI	CCNNGG	1 cut(s)	1140
BsaWI	WCCGGW	2 cut(s)	282, 1330
Bsc4I	CCNNNNNNNGG	2 cut(s)	1173, 1337
Bse1I	ACTGG	2 cut(s)	1527, 1898
Bse21I	CCTNAGG	1 cut(s)	995
Bse8I	GATNNNNATC	1 cut(s)	1568
BseAI	TCCGGA	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	1140
BseGI	GGATG	8 cut(s)	256, 469, 580, 796, 1339, 1501, 1534, 1684
BseJI	GATNNNNATC	1 cut(s)	1568
BseLI	CCNNNNNNNGG	2 cut(s)	1173, 1337
BseMII	CTCAG	9 cut(s)	239, 365, 779, 992, 1009, 1259, 1371, 1392, 1413
BseNI	ACTGG	2 cut(s)	1527, 1898
BseRI	GAGGAG	3 cut(s)	623, 1382, 1864
BseXI	GCAGC	2 cut(s)	974, 1318
Bsh1285I	CGRYCG	1 cut(s)	1674
BshFI	GGCC	1 cut(s)	59
BsiEI	CGRYCG	1 cut(s)	1674
BsiHKAI	GWGCWC	4 cut(s)	156, 282, 385, 1446
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	283, 1331
BslFI	GGGAC	1 cut(s)	1354
BslI	CCNNNNNNNGG	2 cut(s)	1173, 1337
BsmAI	GTCTC	3 cut(s)	428, 922, 1891
BsmFI	GGGAC	1 cut(s)	1354
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	1891
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	4 cut(s)	156, 282, 385, 1446
Bsp13I	TCCGGA	1 cut(s)	282
Bsp1407I	TGTACA	1 cut(s)	1755
BspACI	CCGC	1 cut(s)	1533
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	9 cut(s)	238, 364, 778, 991, 1008, 1260, 1372, 1393, 1414
BspEI	TCCGGA	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	1002
BspMAI	CTGCAG	1 cut(s)	1494
BspPI	GGATC	3 cut(s)	995, 1008, 1640
BspQI	GCTCTTC	1 cut(s)	1434
BspTI	CTTAAG	2 cut(s)	113, 695
BspTNI	GGTCTC	1 cut(s)	1891
BsrGI	TGTACA	1 cut(s)	1755
BsrI	ACTGG	2 cut(s)	1527, 1898
BssECI	CCNNGG	1 cut(s)	1140
BssNAI	GTATAC	1 cut(s)	1120
BssT1I	CCWWGG	1 cut(s)	1140
Bst1107I	GTATAC	1 cut(s)	1120
Bst4CI	ACNGT	3 cut(s)	218, 1089, 1225
Bst6I	CTCTTC	7 cut(s)	48, 70, 167, 600, 875, 1434, 1544
BstAFI	CTTAAG	2 cut(s)	113, 695
BstAUI	TGTACA	1 cut(s)	1755
BstC8I	GCNNGC	2 cut(s)	1501, 1591
BstF5I	GGATG	8 cut(s)	256, 469, 580, 796, 1339, 1501, 1534, 1684
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	2 cut(s)	322, 543
BstMAI	GTCTC	3 cut(s)	428, 922, 1891
BstMCI	CGRYCG	1 cut(s)	1674
BstNSI	RCATGY	1 cut(s)	1593
BstPAI	GACNNNNGTC	1 cut(s)	44
BstSFI	CTRYAG	1 cut(s)	1490
BstV1I	GCAGC	2 cut(s)	974, 1318
BstX2I	RGATCY	3 cut(s)	193, 775, 1000
BstXI	CCANNNNNNTGG	1 cut(s)	1626
BstYI	RGATCY	3 cut(s)	193, 775, 1000
BstZ17I	GTATAC	1 cut(s)	1120
Bsu36I	CCTNAGG	1 cut(s)	995
BsuI	GTATCC	2 cut(s)	1023, 1668
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	8 cut(s)	256, 469, 580, 796, 1339, 1501, 1534, 1684
BtsIMutI	CAGTG	3 cut(s)	223, 986, 1230
Cac8I	GCNNGC	2 cut(s)	1501, 1591
CfoI	GCGC	2 cut(s)	322, 543
Csp6I	GTAC	6 cut(s)	29, 623, 864, 1247, 1756, 1795
CspCI	CAANNNNNGTGG	2 cut(s)	1786, 1821
CviAII	CATG	7 cut(s)	44, 209, 365, 749, 921, 1030, 1590
CviQI	GTAC	6 cut(s)	29, 623, 864, 1247, 1756, 1795
DraI	TTTAAA	5 cut(s)	669, 1204, 1395, 1416, 1666
Eam1104I	CTCTTC	7 cut(s)	48, 70, 167, 600, 875, 1434, 1544
EarI	CTCTTC	7 cut(s)	48, 70, 167, 600, 875, 1434, 1544
Ecl136II	GAGCTC	4 cut(s)	154, 280, 383, 1444
Eco130I	CCWWGG	1 cut(s)	1140
Eco147I	AGGCCT	1 cut(s)	59
Eco24I	GRGCYC	4 cut(s)	156, 282, 385, 1446
Eco31I	GGTCTC	1 cut(s)	1891
Eco32I	GATATC	1 cut(s)	1111
Eco47III	AGCGCT	1 cut(s)	321
Eco53kI	GAGCTC	4 cut(s)	154, 280, 383, 1444
Eco57I	CTGAAG	5 cut(s)	182, 398, 696, 797, 1808
Eco81I	CCTNAGG	1 cut(s)	995
Eco88I	CYCGRG	1 cut(s)	155
EcoICRI	GAGCTC	4 cut(s)	154, 280, 383, 1444
EcoRV	GATATC	1 cut(s)	1111
EcoT14I	CCWWGG	1 cut(s)	1140
EcoT38I	GRGCYC	4 cut(s)	156, 282, 385, 1446
ErhI	CCWWGG	1 cut(s)	1140
FaeI	CATG	7 cut(s)	47, 212, 368, 752, 924, 1033, 1593
FalI	AAGNNNNNCTT	2 cut(s)	795, 827
FaqI	GGGAC	1 cut(s)	1354
FatI	CATG	7 cut(s)	43, 208, 364, 748, 920, 1029, 1589
FbaI	TGATCA	4 cut(s)	211, 615, 751, 793
FblI	GTMKAC	1 cut(s)	1119
Fnu4HI	GCNGC	2 cut(s)	963, 1307
FokI	GGATG	8 cut(s)	263, 476, 587, 803, 1346, 1508, 1541, 1691
FriOI	GRGCYC	4 cut(s)	156, 282, 385, 1446
Fsp4HI	GCNGC	2 cut(s)	963, 1307
FspBI	CTAG	4 cut(s)	707, 845, 1026, 1613
FspI	TGCGCA	1 cut(s)	542
GlaI	GCGC	2 cut(s)	321, 542
GluI	GCNGC	2 cut(s)	963, 1307
GsuI	CTGGAG	1 cut(s)	1915
HaeII	RGCGCY	1 cut(s)	323
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	2 cut(s)	283, 1331
HhaI	GCGC	2 cut(s)	322, 543
Hin1II	CATG	7 cut(s)	47, 212, 368, 752, 924, 1033, 1593
Hin6I	GCGC	2 cut(s)	320, 541
HinP1I	GCGC	2 cut(s)	320, 541
HindIII	AAGCTT	3 cut(s)	122, 332, 515
HinfI	GANTC	6 cut(s)	40, 78, 421, 719, 1034, 1177
HpaII	CCGG	2 cut(s)	283, 1331
HphI	GGTGA	1 cut(s)	1564
Hpy166II	GTNNAC	2 cut(s)	1120, 1756
Hpy188III	TCNNGA	6 cut(s)	283, 635, 815, 827, 1106, 1706
Hpy8I	GTNNAC	2 cut(s)	1120, 1756
HpyAV	CCTTC	9 cut(s)	70, 595, 641, 655, 1202, 1210, 1366, 1690, 1783
HpyCH4III	ACNGT	3 cut(s)	218, 1089, 1225
HpyCH4IV	ACGT	2 cut(s)	31, 625
HpyCH4V	TGCA	9 cut(s)	19, 298, 445, 924, 1101, 1492, 1583, 1589, 1593
HpySE526I	ACGT	2 cut(s)	31, 625
Hsp92II	CATG	7 cut(s)	47, 212, 368, 752, 924, 1033, 1593
HspAI	GCGC	2 cut(s)	320, 541
Kpn2I	TCCGGA	1 cut(s)	282
Ksp22I	TGATCA	4 cut(s)	211, 615, 751, 793
LguI	GCTCTTC	1 cut(s)	1434
LmnI	GCTCC	2 cut(s)	285, 1468
Lsp1109I	GCAGC	2 cut(s)	974, 1318
LweI	GCATC	3 cut(s)	128, 565, 1486
MaeI	CTAG	4 cut(s)	707, 845, 1026, 1613
MaeII	ACGT	2 cut(s)	31, 625
MaeIII	GTNAC	5 cut(s)	626, 1129, 1478, 1765, 1816
MfeI	CAATTG	2 cut(s)	870, 1256
MflI	RGATCY	3 cut(s)	193, 775, 1000
MhlI	GDGCHC	4 cut(s)	156, 282, 385, 1446
MlyI	GAGTC	4 cut(s)	34, 87, 430, 1171
MroI	TCCGGA	1 cut(s)	282
MroXI	GAANNNNTTC	1 cut(s)	195
MspCI	CTTAAG	2 cut(s)	113, 695
MspI	CCGG	2 cut(s)	283, 1331
MunI	CAATTG	2 cut(s)	870, 1256
NlaIII	CATG	7 cut(s)	47, 212, 368, 752, 924, 1033, 1593
NlaIV	GGNNCC	1 cut(s)	1002
NmuCI	GTSAC	2 cut(s)	1129, 1765
NsbI	TGCGCA	1 cut(s)	542
NspI	RCATGY	1 cut(s)	1593
PaeI	GCATGC	1 cut(s)	1593
PaeR7I	CTCGAG	1 cut(s)	155
PceI	AGGCCT	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	1434
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	719, 1034
PkrI	GCNGC	2 cut(s)	964, 1308
Ple19I	CGATCG	1 cut(s)	1674
PleI	GAGTC	4 cut(s)	34, 86, 429, 1171
PpsI	GAGTC	4 cut(s)	34, 86, 429, 1171
PshAI	GACNNNNGTC	1 cut(s)	44
PsiI	TTATAA	1 cut(s)	1736
Psp124BI	GAGCTC	4 cut(s)	156, 282, 385, 1446
PspN4I	GGNNCC	1 cut(s)	1002
PspXI	VCTCGAGB	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	1494
PsuI	RGATCY	3 cut(s)	193, 775, 1000
PvuI	CGATCG	1 cut(s)	1674
RsaI	GTAC	6 cut(s)	30, 624, 865, 1248, 1757, 1796
RsaNI	GTAC	6 cut(s)	29, 623, 864, 1247, 1756, 1795
SacI	GAGCTC	4 cut(s)	156, 282, 385, 1446
SapI	GCTCTTC	1 cut(s)	1434
SatI	GCNGC	2 cut(s)	963, 1307
SchI	GAGTC	4 cut(s)	34, 87, 430, 1171
SduI	GDGCHC	4 cut(s)	156, 282, 385, 1446
SfaNI	GCATC	3 cut(s)	128, 565, 1486
SfcI	CTRYAG	1 cut(s)	1490
Sfr274I	CTCGAG	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	6 cut(s)	113, 125, 155, 167, 335, 695
SmoI	CTYRAG	6 cut(s)	113, 125, 155, 167, 335, 695
SphI	GCATGC	1 cut(s)	1593
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	1 cut(s)	1533
SspI	AATATT	2 cut(s)	935, 1433
SspMI	CTAG	4 cut(s)	707, 845, 1026, 1613
SstI	GAGCTC	4 cut(s)	156, 282, 385, 1446
StuI	AGGCCT	1 cut(s)	59
StyI	CCWWGG	1 cut(s)	1140
TaaI	ACNGT	3 cut(s)	218, 1089, 1225
TaiI	ACGT	2 cut(s)	34, 628
TaqI	TCGA	4 cut(s)	156, 1113, 1674, 1802
TatI	WGTACW	4 cut(s)	863, 1246, 1755, 1794
TfiI	GAWTC	2 cut(s)	719, 1034
TscAI	CASTG	3 cut(s)	223, 986, 1230
TseFI	GTSAC	2 cut(s)	1129, 1765
TseI	GCWGC	2 cut(s)	962, 1306
Tsp45I	GTSAC	2 cut(s)	1129, 1765
TspRI	CASTG	3 cut(s)	223, 986, 1230
Vha464I	CTTAAG	2 cut(s)	113, 695
XapI	RAATTY	6 cut(s)	1045, 1198, 1350, 1682, 1701, 1920
XceI	RCATGY	1 cut(s)	1593
XhoI	CTCGAG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	1119
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	4 cut(s)	707, 845, 1026, 1613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.