Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002915.1

Orthogroup ID

OG0006925

Physical Location & Seq

Genomic Coordinates Reverse (-)

24752 .. 26635

Gene Structure 1884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002915.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atgggagagcttgacaacaaaccatttcaaacttcatgcaagagacaatattctaaaaaagaagctgatgacaaggcagcaacactatattctcaatgggaaggctacctcagggatccaaattggtatccattcacaactagcatggattcttgtggaaattctaagctgactatcaacgaagaagatgaaaaattgaaacagttaaaggtctgcaatcttgatatcgaagtatacaaggctgtgacaactgccttggtggaattgaatagctataataccaatggtaggactccaatagcagaattatggaattttaaagaagggaggaaggcaacagtgaaagagggaatatcgtatgtactgaaccaattgaaactgctgagaaagagggttggtaaaatgctgtcagaacaaaagaaaaaaccggatgatgggactaatgaaattcaaaagaagttagaggagaaggaagctgagttgaaagatttaaaagctgagttagaatattcagaagagctcaactctacactatttgtcaaggagcgtgaaagtaacgatgaactgcaggatgctcgcaaggagttgatcaggcaggaactggtggatggcggttttattggcgtgaagagaatgggagagcttgacatcaccccttttgcaaccgcatgcaagagaaataattctatgctagaaccagaggtgtggcaggattgtattagtgatccaagctggtatccttttaaaccgatcgaggatgaatttggaaatcggaaggaaattcttgatgtagaagatgaaaaattgaagtgtataaagggcaacgatggagtgtacaaggcagttgtgactgccttgatggaactgaaggagtacaattcgagtggtatgtatgtaacagaagaactatggaactttcaaaaagggaggagggcaacactacaagagggattatcatatatactattgaactggagacctctgaaaaggaaaagaaaaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

334

Amino Acids

38.81

Weight (kDa)

5.61

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006925)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36270 FvH4_3g36300
rosa_chinensis	RchiOBHm_Chr5g0065081 RchiOBHm_Chr5g0065111
rosa_laevigata	RLG00000035750 RLG00000035757
rosa_multiflora	Rmu_sc0002915.1_g000011 Rmu_sc0002915.1_g000016 Rmu_sc0006219.1_g000001 Rmu_sc0006219.1_g000008
rosa_roxburghii	Rroxscaffold_1G00016210 Rroxscaffold_1G00016240
rosa_rugosa	Rorug05G0367600 Rorug05G0367900 Rorug05G0368000
rosa_samantha	Rh5AG426200 Rh5AG426400 Rh5AG426500 Rh5BG441400 Rh5BG441700 Rh5CG464100 Rh5CG464300 Rh5DG453900 Rh5DG454200
rosa_wichuraiana	Rw5G040040 Rw5G040060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	2 cut(s)	612, 666
AclWI	GGATC	3 cut(s)	110, 123, 719
AcsI	RAATTY	6 cut(s)	160, 313, 447, 761, 780, 999
AcuI	CTGAAG	1 cut(s)	887
AfaI	GTAC	3 cut(s)	363, 836, 875
AfiI	CCNNNNNNNGG	2 cut(s)	288, 434
AgsI	TTSAA	9 cut(s)	29, 199, 268, 376, 452, 484, 808, 920, 970
AluBI	AGCT	9 cut(s)	10, 65, 169, 273, 476, 497, 520, 643, 732
AluI	AGCT	9 cut(s)	10, 65, 169, 273, 476, 497, 520, 643, 732
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	2 cut(s)	37, 970
AlwI	GGATC	3 cut(s)	110, 123, 719
AlwNI	CAGNNNCTG	1 cut(s)	601
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	6 cut(s)	160, 313, 447, 761, 780, 999
Asp700I	GAANNNNTTC	1 cut(s)	682
AsuHPI	GGTGA	1 cut(s)	643
AxyI	CCTNAGG	1 cut(s)	110
BamHI	GGATCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	522
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	4 cut(s)	428, 602, 821, 853
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BciVI	GTATCC	2 cut(s)	138, 747
BclI	TGATCA	1 cut(s)	588
BcoDI	GTCTC	2 cut(s)	37, 970
BfaI	CTAG	2 cut(s)	141, 692
BfmI	CTRYAG	1 cut(s)	566
BfuI	GTATCC	2 cut(s)	138, 747
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	117
BmsI	GCATC	1 cut(s)	562
BplI	GAGNNNNNCTC	2 cut(s)	509, 541
BpmI	CTGGAG	1 cut(s)	994
BsaI	GGTCTC	1 cut(s)	970
BsaJI	CCNNGG	1 cut(s)	255
BsaWI	WCCGGW	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 434
Bse1I	ACTGG	2 cut(s)	606, 977
Bse21I	CCTNAGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	4 cut(s)	436, 577, 613, 763
BseLI	CCNNNNNNNGG	2 cut(s)	288, 434
BseMII	CTCAG	4 cut(s)	124, 374, 468, 489
BseNI	ACTGG	2 cut(s)	606, 977
BseRI	GAGGAG	2 cut(s)	479, 943
BseXI	GCAGC	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	753
BsiEI	CGRYCG	1 cut(s)	753
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	1 cut(s)	428
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	288, 434
BsmAI	GTCTC	2 cut(s)	37, 970
BsmFI	GGGAC	1 cut(s)	451
Bso31I	GGTCTC	1 cut(s)	970
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp1407I	TGTACA	1 cut(s)	834
Bsp143I	GATC	4 cut(s)	115, 588, 724, 750
BspACI	CCGC	2 cut(s)	612, 666
BspCNI	CTCAG	4 cut(s)	123, 375, 469, 490
BspLI	GGNNCC	1 cut(s)	117
BspMAI	CTGCAG	1 cut(s)	570
BspPI	GGATC	3 cut(s)	110, 123, 719
BspQI	GCTCTTC	1 cut(s)	510
BspTNI	GGTCTC	1 cut(s)	970
BsrGI	TGTACA	1 cut(s)	834
BsrI	ACTGG	2 cut(s)	606, 977
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	4 cut(s)	115, 588, 724, 750
BssNAI	GTATAC	1 cut(s)	235
BssT1I	CCWWGG	1 cut(s)	255
Bst1107I	GTATAC	1 cut(s)	235
Bst4CI	ACNGT	2 cut(s)	204, 340
Bst6I	CTCTTC	2 cut(s)	510, 623
BstAUI	TGTACA	1 cut(s)	834
BstC8I	GCNNGC	2 cut(s)	577, 670
BstDEI	CTNAG	5 cut(s)	110, 165, 383, 477, 498
BstF5I	GGATG	4 cut(s)	436, 577, 613, 763
BstKTI	GATC	4 cut(s)	118, 591, 727, 753
BstMAI	GTCTC	2 cut(s)	37, 970
BstMBI	GATC	4 cut(s)	115, 588, 724, 750
BstMCI	CGRYCG	1 cut(s)	753
BstNSI	RCATGY	1 cut(s)	672
BstSFI	CTRYAG	1 cut(s)	566
BstV1I	GCAGC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	115
BstXI	CCANNNNNNTGG	1 cut(s)	705
BstYI	RGATCY	1 cut(s)	115
BstZ17I	GTATAC	1 cut(s)	235
Bsu36I	CCTNAGG	1 cut(s)	110
BsuI	GTATCC	2 cut(s)	138, 747
BtsCI	GGATG	4 cut(s)	436, 577, 613, 763
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	2 cut(s)	577, 670
CaiI	CAGNNNCTG	1 cut(s)	601
Csp6I	GTAC	3 cut(s)	362, 835, 874
CspCI	CAANNNNNGTGG	2 cut(s)	865, 900
CviAII	CATG	3 cut(s)	36, 145, 669
CviQI	GTAC	3 cut(s)	362, 835, 874
DdeI	CTNAG	5 cut(s)	110, 165, 383, 477, 498
DpnI	GATC	4 cut(s)	117, 590, 726, 752
DpnII	GATC	4 cut(s)	115, 588, 724, 750
DraI	TTTAAA	3 cut(s)	319, 492, 745
Eam1104I	CTCTTC	2 cut(s)	510, 623
EarI	CTCTTC	2 cut(s)	510, 623
Ecl136II	GAGCTC	1 cut(s)	520
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	522
Eco31I	GGTCTC	1 cut(s)	970
Eco32I	GATATC	1 cut(s)	226
Eco53kI	GAGCTC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	887
Eco81I	CCTNAGG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	520
EcoRV	GATATC	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	3 cut(s)	39, 148, 672
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	3 cut(s)	35, 144, 668
FbaI	TGATCA	1 cut(s)	588
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	4 cut(s)	443, 584, 620, 770
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	2 cut(s)	141, 692
GluI	GCNGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	994
HapII	CCGG	1 cut(s)	428
Hin1II	CATG	3 cut(s)	39, 148, 672
HinfI	GANTC	2 cut(s)	149, 292
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	1 cut(s)	643
Hpy166II	GTNNAC	2 cut(s)	235, 835
Hpy188I	TCNGA	4 cut(s)	412, 514, 774, 984
Hpy188III	TCNNGA	2 cut(s)	221, 785
Hpy8I	GTNNAC	2 cut(s)	235, 835
HpyAV	CCTTC	6 cut(s)	95, 317, 325, 463, 769, 862
HpyCH4III	ACNGT	2 cut(s)	204, 340
HpyCH4V	TGCA	5 cut(s)	39, 216, 568, 662, 672
HpyF3I	CTNAG	5 cut(s)	110, 165, 383, 477, 498
Hsp92II	CATG	3 cut(s)	39, 148, 672
Ksp22I	TGATCA	1 cut(s)	588
Kzo9I	GATC	4 cut(s)	115, 588, 724, 750
LguI	GCTCTTC	1 cut(s)	510
LmnI	GCTCC	1 cut(s)	544
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	1 cut(s)	562
MaeI	CTAG	2 cut(s)	141, 692
MaeIII	GTNAC	4 cut(s)	244, 554, 847, 895
MalI	GATC	4 cut(s)	117, 590, 726, 752
MboI	GATC	4 cut(s)	115, 588, 724, 750
MboII	GAAGA	6 cut(s)	194, 197, 527, 640, 806, 914
MfeI	CAATTG	1 cut(s)	371
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	522
MlyI	GAGTC	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	682
MseI	TTAA	4 cut(s)	206, 318, 491, 744
MspI	CCGG	1 cut(s)	428
MunI	CAATTG	1 cut(s)	371
NdeII	GATC	4 cut(s)	115, 588, 724, 750
NlaIII	CATG	3 cut(s)	39, 148, 672
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	2 cut(s)	244, 847
NspI	RCATGY	1 cut(s)	672
PaeI	GCATGC	1 cut(s)	672
PciSI	GCTCTTC	1 cut(s)	510
PdmI	GAANNNNTTC	1 cut(s)	682
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	79
Ple19I	CGATCG	1 cut(s)	753
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	570
PstNI	CAGNNNCTG	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	115
PvuI	CGATCG	1 cut(s)	753
RsaI	GTAC	3 cut(s)	363, 836, 875
RsaNI	GTAC	3 cut(s)	362, 835, 874
SacI	GAGCTC	1 cut(s)	522
SapI	GCTCTTC	1 cut(s)	510
SaqAI	TTAA	4 cut(s)	206, 318, 491, 744
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	4 cut(s)	115, 588, 724, 750
SchI	GAGTC	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	522
SfaNI	GCATC	1 cut(s)	562
SfcI	CTRYAG	1 cut(s)	566
SphI	GCATGC	1 cut(s)	672
SsiI	CCGC	2 cut(s)	612, 666
SspI	AATATT	2 cut(s)	50, 509
SspMI	CTAG	2 cut(s)	141, 692
SstI	GAGCTC	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	204, 340
TaqI	TCGA	3 cut(s)	228, 753, 881
TatI	WGTACW	3 cut(s)	361, 834, 873
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	4 cut(s)	206, 318, 491, 744
Tru9I	TTAA	4 cut(s)	206, 318, 491, 744
TscAI	CASTG	1 cut(s)	345
TseFI	GTSAC	2 cut(s)	244, 847
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	2 cut(s)	244, 847
TspDTI	ATGAA	6 cut(s)	24, 204, 459, 576, 774, 813
TspRI	CASTG	1 cut(s)	345
XapI	RAATTY	6 cut(s)	160, 313, 447, 761, 780, 999
XceI	RCATGY	1 cut(s)	672
XmiI	GTMKAC	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	682
XspI	CTAG	2 cut(s)	141, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.