Rorug05G0367600

XH XS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006925
Physical Location & Seq
Reverse (-)
49136242 .. 49137039
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0367600.1

Sequence Viewer

Length: 798 bp
ATGTTGGAGAATGTACTTACTTCTACCTCTCAAGGAGACCCTTTTAGGGAATTGTGGGAAAGAGTTTGGAAAGCAAAAGTGTCGGGTAAAGTACAAATTTGTATCTGGAGAGCTTGTTCGAATCTTTTACCTACAAGAGCTAAACTGAGCATGAAGGGATATGTGGGAGATTTGGACTGCCTCTTATGCCCTCATCCATATGAAGATGTAGCTCATGTTCTCTATAAGTGTCCTACTGCAGCCTCTATCTTAAATGCTCCTCCTTTCAACATAGGTAGTAGTTTGTTACCTAATATTCATTTCAAGGAGTGGATGCTTGAACATGCATTGCATATGAAGAAAGAAACCTTTGCAAGACTAATGATGATTCTTTGGGCCTTGTGGAAGAATAGAAATAATTTGGTCTGGAATAAAAACACGAAGCAATCTGCGAATGAGTTGGTTCTTAGCTCGATGGCTTGGTTTGAAGACTTTAGTCAAGCGAATAAGGTCTTCAAGTCAGACATACCTAAACAGATAATCAGTTGGAAAGCTGCTACTCAAGTAAGATGGAAGCTTAACGTTGATGGCAGCTTTCTTCCCAATATAACTCATGGAGGTGTTGCAGGTATATTGAGAGATGATTCAGGAACTTTCAGAGCTGCATCTGCAACTCCAATTCACCATGTTGCCTCTGCAAAACAAGTGGAGCTCTGTGCAATCAAGGAAGGGCTAAAATTTTCGCAACAATTGCAGGTCAGCAATGTTGTCATTGAAATAGATTGCCTTGAGGCCGTTTCAAACATTGCAGACACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XH XS zf-XS

Protein Analysis

265

Amino Acids

29.8

Weight (kDa)

8.79

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 16 - 82 5e-13 zinc-binding in reverse transcriptase
RVT_3 PF13456 187 - 262 3.9e-13 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 596, 724
AclI AACGTT 1 cut(s) 561
AcsI RAATTY 2 cut(s) 96, 716
AfaI GTAC 2 cut(s) 15, 93
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 7 cut(s) 268, 304, 320, 467, 496, 755, 780
AloI GAACNNNNNNTCC 2 cut(s) 100, 132
AluBI AGCT 9 cut(s) 113, 140, 212, 450, 533, 556, 573, 641, 691
AluI AGCT 9 cut(s) 113, 140, 212, 450, 533, 556, 573, 641, 691
Alw21I GWGCWC 1 cut(s) 693
Alw26I GTCTC 1 cut(s) 30
AoxI GGCC 2 cut(s) 375, 771
ApeKI GCWGC 4 cut(s) 239, 533, 570, 641
ApoI RAATTY 2 cut(s) 96, 716
AspS9I GGNCC 1 cut(s) 375
AsuHPI GGTGA 1 cut(s) 653
AsuII TTCGAA 1 cut(s) 119
BanII GRGCYC 1 cut(s) 693
BbsI GAAGAC 2 cut(s) 474, 484
Bbv12I GWGCWC 1 cut(s) 693
BbvI GCAGC 4 cut(s) 251, 520, 582, 628
BccI CCATC 3 cut(s) 448, 543, 560
BceAI ACGGC 1 cut(s) 758
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BcoDI GTCTC 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 237
BfuAI ACCTGC 2 cut(s) 596, 724
BisI GCNGC 4 cut(s) 240, 534, 571, 642
BlsI GCNGC 4 cut(s) 241, 535, 572, 643
BmgT120I GGNCC 1 cut(s) 375
BmsI GCATC 2 cut(s) 303, 653
BoxI GACNNNNGTC 1 cut(s) 474
BpiI GAAGAC 2 cut(s) 474, 484
BpmI CTGGAG 1 cut(s) 127
Bpu14I TTCGAA 1 cut(s) 119
BpuEI CTTGAG 3 cut(s) 15, 525, 788
BsaI GGTCTC 1 cut(s) 30
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse3DI GCAATG 3 cut(s) 326, 748, 783
BseGI GGATG 2 cut(s) 193, 318
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMI GCAATG 3 cut(s) 326, 748, 783
BseMII CTCAG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 249
BseXI GCAGC 4 cut(s) 251, 520, 582, 628
BshFI GGCC 2 cut(s) 377, 773
BsiHKAI GWGCWC 1 cut(s) 693
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 30
BsnI GGCC 2 cut(s) 377, 773
Bso31I GGTCTC 1 cut(s) 30
Bsp119I TTCGAA 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 693
BspANI GGCC 2 cut(s) 377, 773
BspCNI CTCAG 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 241
BspMI ACCTGC 2 cut(s) 596, 724
BspT104I TTCGAA 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 30
BsrDI GCAATG 3 cut(s) 326, 748, 783
BstAPI GCANNNNNTGC 1 cut(s) 730
BstBI TTCGAA 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 146, 446
BstF5I GGATG 2 cut(s) 193, 318
BstMAI GTCTC 1 cut(s) 30
BstMWI GCNNNNNNNGC 3 cut(s) 186, 647, 730
BstNSI RCATGY 1 cut(s) 326
BstPAI GACNNNNGTC 1 cut(s) 474
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 4 cut(s) 251, 520, 582, 628
BstV2I GAAGAC 2 cut(s) 474, 484
BsuRI GGCC 2 cut(s) 377, 773
BtsCI GGATG 2 cut(s) 193, 318
BveI ACCTGC 2 cut(s) 596, 724
Cfr13I GGNCC 1 cut(s) 375
Csp6I GTAC 2 cut(s) 14, 92
CspCI CAANNNNNGTGG 2 cut(s) 666, 701
CviAII CATG 5 cut(s) 151, 215, 323, 593, 665
CviQI GTAC 2 cut(s) 14, 92
DdeI CTNAG 2 cut(s) 146, 446
Ecl136II GAGCTC 1 cut(s) 691
Eco24I GRGCYC 1 cut(s) 693
Eco31I GGTCTC 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 691
EcoICRI GAGCTC 1 cut(s) 691
EcoT22I ATGCAT 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 693
FaeI CATG 5 cut(s) 154, 218, 326, 596, 668
FatI CATG 5 cut(s) 150, 214, 322, 592, 664
FauNDI CATATG 2 cut(s) 199, 333
Fnu4HI GCNGC 4 cut(s) 240, 534, 571, 642
FokI GGATG 2 cut(s) 180, 325
FriOI GRGCYC 1 cut(s) 693
Fsp4HI GCNGC 4 cut(s) 240, 534, 571, 642
GluI GCNGC 4 cut(s) 240, 534, 571, 642
GsuI CTGGAG 1 cut(s) 127
HaeIII GGCC 2 cut(s) 377, 773
Hin1II CATG 5 cut(s) 154, 218, 326, 596, 668
HindIII AAGCTT 1 cut(s) 554
HinfI GANTC 3 cut(s) 121, 367, 623
HphI GGTGA 1 cut(s) 653
Hpy188I TCNGA 2 cut(s) 502, 638
Hpy188III TCNNGA 3 cut(s) 106, 406, 627
HpyAV CCTTC 2 cut(s) 148, 701
HpyCH4IV ACGT 1 cut(s) 561
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 647, 730
HpyF3I CTNAG 2 cut(s) 146, 446
HpySE526I ACGT 1 cut(s) 561
Hsp92II CATG 5 cut(s) 154, 218, 326, 596, 668
LmnI GCTCC 2 cut(s) 262, 688
LpnPI CCDG 5 cut(s) 91, 391, 591, 612, 719
Lsp1109I GCAGC 4 cut(s) 251, 520, 582, 628
LweI GCATC 2 cut(s) 303, 653
MaeII ACGT 1 cut(s) 561
MaeIII GTNAC 1 cut(s) 285
MboII GAAGA 6 cut(s) 215, 349, 397, 479, 484, 569
MfeI CAATTG 1 cut(s) 728
MhlI GDGCHC 1 cut(s) 693
MluCI AATT 6 cut(s) 50, 96, 397, 657, 716, 728
MmeI TCCRAC 1 cut(s) 506
MnlI CCTC 8 cut(s) 37, 191, 201, 253, 270, 590, 682, 763
Mph1103I ATGCAT 1 cut(s) 328
MseI TTAA 2 cut(s) 251, 558
MslI CAYNNNNRTG 2 cut(s) 198, 597
MunI CAATTG 1 cut(s) 728
MwoI GCNNNNNNNGC 3 cut(s) 186, 647, 730
NdeI CATATG 2 cut(s) 199, 333
NlaIII CATG 5 cut(s) 154, 218, 326, 596, 668
NsiI ATGCAT 1 cut(s) 328
NspI RCATGY 1 cut(s) 326
NspV TTCGAA 1 cut(s) 119
PfeI GAWTC 3 cut(s) 121, 367, 623
PkrI GCNGC 4 cut(s) 241, 535, 572, 643
PshAI GACNNNNGTC 1 cut(s) 474
Psp124BI GAGCTC 1 cut(s) 693
Psp1406I AACGTT 1 cut(s) 561
PspPI GGNCC 1 cut(s) 375
PsrI GAACNNNNNNTAC 2 cut(s) 201, 233
PstI CTGCAG 1 cut(s) 241
RsaI GTAC 2 cut(s) 15, 93
RsaNI GTAC 2 cut(s) 14, 92
RseI CAYNNNNRTG 2 cut(s) 198, 597
SacI GAGCTC 1 cut(s) 693
SaqAI TTAA 2 cut(s) 251, 558
SatI GCNGC 4 cut(s) 240, 534, 571, 642
Sau96I GGNCC 1 cut(s) 375
SduI GDGCHC 1 cut(s) 693
SfaNI GCATC 2 cut(s) 303, 653
SfcI CTRYAG 1 cut(s) 237
SfuI TTCGAA 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 198, 597
SmlI CTYRAG 3 cut(s) 30, 540, 767
SmoI CTYRAG 3 cut(s) 30, 540, 767
Sse9I AATT 6 cut(s) 50, 96, 397, 657, 716, 728
SspI AATATT 1 cut(s) 295
SstI GAGCTC 1 cut(s) 693
TaiI ACGT 1 cut(s) 564
TaqI TCGA 2 cut(s) 119, 452
TasI AATT 6 cut(s) 50, 96, 397, 657, 716, 728
TatI WGTACW 2 cut(s) 13, 91
TfiI GAWTC 3 cut(s) 121, 367, 623
Tru1I TTAA 2 cut(s) 251, 558
Tru9I TTAA 2 cut(s) 251, 558
TseI GCWGC 4 cut(s) 239, 533, 570, 641
TspDTI ATGAA 4 cut(s) 167, 216, 287, 350
XapI RAATTY 2 cut(s) 96, 716
XceI RCATGY 1 cut(s) 326
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.