Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002509

Physical Location & Seq

Genomic Coordinates Forward (+)

32811379 .. 32813542

Gene Structure 2164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g38430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAAGCCTTTGCAAGATCTTCCACAACGTTGTTTGCAAAGGCTAATACTAACAAGCCTCCATCGCCTGTAAAAGCTCTTCTTGGTCAATCTAGCATTTGCTTTGTAAGATTTGGGAATTCAAATGCAAACGTTCATCATCATACTTCTTTGCTTAGGCACAAAGCTATTCGATCAGTTCGCTCATCTGAAACAAGGGTGTTAAGGAACTCAGTCTCAGCAGGATTTGTGATCGAACCAGCGGCATCAAAAACCGTTCATGTTCAATTCCGATTACATAAGAAGTGCAGCTACGGTGATAATTTTCTCCTGGTAGGCAATGAACCCATCATTGGACAGTGGAACCCTTATAGTGCTGTACCCCTTAACTGGTCTGATGGAAACATTTGGACAGTTGACCTGGACATACCAATTGACAGAGCAATCCAGTTCAAATTTATACTAAAGAAAAGCACAGGAGATCTGTTATGGCAACCTGGTCCAGACAGAATTCTTCACACCTGGGATACCAACAGCACTATAACCATAGCCGAAGACTGGAAACATGCGAAACTTCAGAAGTTAACTGAAAAGAAAAATGTCAGTCAAAATGAGACGCTACATACTAAGCGAGCTGCGACTTTTTCAGACAAGTTTGCCACTGTAAATGGCGTACCAACTTATAGTAGCAGGAATGAGTTTGTTTTCAAAGAGAGGGCGTTTAGTTCAGCAGAGGGAACTCTGCTTCAGGAAAGCCAAGCAGTTTGCAATGCAAATGACGGTCTTTGCATCATGACCAGGCCAACATCCTTAGGTAGCATGGAAGATGAAGATGAATACTGTGAAGCTGAATACTATGACGATGAATATTATGAAGATGACTGTGAATATGAAGATAGATACGAAGACGAAGACATCATGTTTACATATGAAGGAGGTCGTGTTCTTGTGCCTGGTTTAGTACAAGGGGTAACTGGAAAAACCATTGATATCAGTACTGATGGCTCCATTGTGGTTGATGCGAGAGAGGTACACAGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

341

Amino Acids

38.16

Weight (kDa)

5.43

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBM_20	PF00686	85 - 173	4e-19	Starch binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01260 AT5G01260 AT5G01260
fragaria_vesca	FvH4_3g38430 FvH4_6g11650 FvH4_6g11650 FvH4_6g11650
malus_domestica	MD04G1150500.v1.1 MD12G1164600.v1.1
prunus_persica	Prupe.6G058700_v2.0.a1 Prupe.6G275300_v2.0.a1 Prupe.6G275300_v2.0.a1
pyrus_communis	pycom04g13610 pycom04g13620 pycom11g06380 pycom12g15750
rosa_chinensis	RchiOBHm_Chr3g0463311
rosa_laevigata	RLG00000024791 RLG00000036036
rosa_multiflora	Rmu_co8319585.1_g000001 Rmu_sc0000853.1_g000034 Rmu_sc0000923.1_g000002 Rmu_sc0040359.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011670 Rroxscaffold_6G00416670
rosa_rugosa	Rorug03G0063800 Rorug03G0063900 Rorug03G0064000 Rorug03G0064100 Rorug05G0396200
rosa_samantha	Rh3AG121700 Rh3BG126200 Rh3CG128100 Rh3DG127300 Rh5AG452900 Rh5BG471900 Rh5CG494300 Rh5DG484400
rosa_wichuraiana	Rw0G006070 Rw3G010340 Rw5G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	242
AclI	AACGTT	2 cut(s)	29, 132
AcsI	RAATTY	3 cut(s)	118, 434, 489
AcuI	CTGAAG	2 cut(s)	539, 710
AfaI	GTAC	5 cut(s)	360, 654, 942, 976, 1011
AfiI	CCNNNNNNNGG	3 cut(s)	332, 369, 537
AgsI	TTSAA	4 cut(s)	123, 266, 433, 688
AjnI	CCWGG	6 cut(s)	309, 399, 475, 500, 776, 931
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AloI	GAACNNNNNNTCC	2 cut(s)	906, 938
AluBI	AGCT	5 cut(s)	77, 167, 291, 614, 827
AluI	AGCT	5 cut(s)	77, 167, 291, 614, 827
Alw26I	GTCTC	2 cut(s)	220, 587
AoxI	GGCC	1 cut(s)	779
ApeKI	GCWGC	2 cut(s)	288, 614
ApoI	RAATTY	3 cut(s)	118, 434, 489
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	479
AxyI	CCTNAGG	1 cut(s)	790
BarI	GAAGNNNNNNTAC	4 cut(s)	63, 95, 275, 307
BbsI	GAAGAC	3 cut(s)	540, 891, 897
BbvI	GCAGC	2 cut(s)	300, 601
BccI	CCATC	4 cut(s)	70, 335, 371, 974
BciT130I	CCWGG	6 cut(s)	311, 401, 477, 502, 778, 933
BciVI	GTATCC	1 cut(s)	499
BcoDI	GTCTC	2 cut(s)	220, 587
BfaI	CTAG	1 cut(s)	93
BfuI	GTATCC	1 cut(s)	499
BglII	AGATCT	2 cut(s)	17, 460
BisI	GCNGC	3 cut(s)	243, 289, 615
BlsI	GCNGC	3 cut(s)	244, 290, 616
BmcAI	AGTACT	1 cut(s)	976
Bme1390I	CCNGG	6 cut(s)	311, 401, 477, 502, 778, 933
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	2 cut(s)	344, 985
BmrFI	CCNGG	6 cut(s)	311, 401, 477, 502, 778, 933
BmsI	GCATC	3 cut(s)	254, 777, 988
BpiI	GAAGAC	3 cut(s)	540, 891, 897
Bpu10I	CCTNAGC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	501
BsaXI	ACNNNNNCTCC	2 cut(s)	906, 936
Bsc4I	CCNNNNNNNGG	3 cut(s)	332, 369, 537
Bse1I	ACTGG	4 cut(s)	374, 427, 542, 958
Bse21I	CCTNAGG	1 cut(s)	790
Bse3DI	GCAATG	2 cut(s)	325, 754
BseBI	CCWGG	6 cut(s)	311, 401, 477, 502, 778, 933
BseDI	CCNNGG	1 cut(s)	501
BseGI	GGATG	1 cut(s)	785
BseLI	CCNNNNNNNGG	3 cut(s)	332, 369, 537
BseMI	GCAATG	2 cut(s)	325, 754
BseMII	CTCAG	2 cut(s)	225, 231
BseNI	ACTGG	4 cut(s)	374, 427, 542, 958
BseXI	GCAGC	2 cut(s)	300, 601
BsgI	GTGCAG	1 cut(s)	307
BshFI	GGCC	1 cut(s)	781
BslI	CCNNNNNNNGG	3 cut(s)	332, 369, 537
BsmAI	GTCTC	2 cut(s)	220, 587
BsmBI	CGTCTC	1 cut(s)	587
BsnI	GGCC	1 cut(s)	781
Bsp143I	GATC	4 cut(s)	17, 173, 231, 460
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	1 cut(s)	781
BspCNI	CTCAG	2 cut(s)	224, 230
BspHI	TCATGA	1 cut(s)	771
BspLI	GGNNCC	2 cut(s)	344, 985
BspQI	GCTCTTC	1 cut(s)	84
BsrDI	GCAATG	2 cut(s)	325, 754
BsrI	ACTGG	4 cut(s)	374, 427, 542, 958
BssECI	CCNNGG	1 cut(s)	501
BssMI	GATC	4 cut(s)	17, 173, 231, 460
Bst2UI	CCWGG	6 cut(s)	311, 401, 477, 502, 778, 933
Bst4CI	ACNGT	9 cut(s)	256, 296, 339, 394, 643, 761, 821, 863, 1016
Bst6I	CTCTTC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	612
BstDEI	CTNAG	5 cut(s)	155, 211, 217, 606, 790
BstF5I	GGATG	1 cut(s)	785
BstKTI	GATC	4 cut(s)	20, 176, 234, 463
BstMAI	GTCTC	2 cut(s)	220, 587
BstMBI	GATC	4 cut(s)	17, 173, 231, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	6 cut(s)	311, 401, 477, 502, 778, 933
BstNSI	RCATGY	1 cut(s)	548
BstSCI	CCNGG	6 cut(s)	309, 399, 475, 500, 776, 931
BstV1I	GCAGC	2 cut(s)	300, 601
BstV2I	GAAGAC	3 cut(s)	540, 891, 897
BstX2I	RGATCY	2 cut(s)	17, 460
BstYI	RGATCY	2 cut(s)	17, 460
Bsu36I	CCTNAGG	1 cut(s)	790
BsuI	GTATCC	1 cut(s)	499
BsuRI	GGCC	1 cut(s)	781
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	785
BtsIMutI	CAGTG	2 cut(s)	344, 639
Cac8I	GCNNGC	1 cut(s)	612
CciI	TCATGA	1 cut(s)	771
Cfr13I	GGNCC	1 cut(s)	479
CseI	GACGC	1 cut(s)	604
CsiI	ACCWGGT	1 cut(s)	475
Csp6I	GTAC	5 cut(s)	359, 653, 941, 975, 1010
CviAII	CATG	5 cut(s)	260, 545, 772, 799, 898
CviQI	GTAC	5 cut(s)	359, 653, 941, 975, 1010
DdeI	CTNAG	5 cut(s)	155, 211, 217, 606, 790
DpnI	GATC	4 cut(s)	19, 175, 233, 462
DpnII	GATC	4 cut(s)	17, 173, 231, 460
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco32I	GATATC	1 cut(s)	970
Eco47I	GGWCC	1 cut(s)	479
Eco57I	CTGAAG	2 cut(s)	539, 710
Eco81I	CCTNAGG	1 cut(s)	790
EcoRI	GAATTC	2 cut(s)	118, 489
EcoRII	CCWGG	6 cut(s)	309, 399, 475, 500, 776, 931
EcoRV	GATATC	1 cut(s)	970
Esp3I	CGTCTC	1 cut(s)	587
FaeI	CATG	5 cut(s)	263, 548, 775, 802, 901
FalI	AAGNNNNNCTT	2 cut(s)	66, 98
FatI	CATG	5 cut(s)	259, 544, 771, 798, 897
FauNDI	CATATG	1 cut(s)	907
Fnu4HI	GCNGC	3 cut(s)	243, 289, 615
FokI	GGATG	1 cut(s)	772
Fsp4HI	GCNGC	3 cut(s)	243, 289, 615
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	3 cut(s)	243, 289, 615
HaeIII	GGCC	1 cut(s)	781
HgaI	GACGC	1 cut(s)	604
Hin1II	CATG	5 cut(s)	263, 548, 775, 802, 901
HincII	GTYRAC	2 cut(s)	397, 564
HindII	GTYRAC	2 cut(s)	397, 564
HpaI	GTTAAC	1 cut(s)	564
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	4 cut(s)	397, 564, 903, 1012
Hpy188I	TCNGA	5 cut(s)	190, 272, 376, 558, 628
Hpy188III	TCNNGA	3 cut(s)	482, 728, 772
Hpy8I	GTNNAC	4 cut(s)	397, 564, 903, 1012
HpyAV	CCTTC	1 cut(s)	905
HpyCH4III	ACNGT	9 cut(s)	256, 296, 339, 394, 643, 761, 821, 863, 1016
HpyCH4IV	ACGT	2 cut(s)	29, 132
HpyCH4V	TGCA	7 cut(s)	14, 38, 128, 288, 747, 752, 768
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	5 cut(s)	155, 211, 217, 606, 790
HpySE526I	ACGT	2 cut(s)	29, 132
Hsp92II	CATG	5 cut(s)	263, 548, 775, 802, 901
KspAI	GTTAAC	1 cut(s)	564
Kzo9I	GATC	4 cut(s)	17, 173, 231, 460
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	989
Lsp1109I	GCAGC	2 cut(s)	300, 601
LweI	GCATC	3 cut(s)	254, 777, 988
MabI	ACCWGGT	1 cut(s)	475
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	2 cut(s)	29, 132
MaeIII	GTNAC	1 cut(s)	949
MalI	GATC	4 cut(s)	19, 175, 233, 462
MboI	GATC	4 cut(s)	17, 173, 231, 460
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	2 cut(s)	17, 460
MluCI	AATT	6 cut(s)	118, 266, 301, 411, 434, 489
MnlI	CCTC	5 cut(s)	69, 687, 706, 908, 1000
MseI	TTAA	4 cut(s)	203, 366, 563, 1021
MspA1I	CMGCKG	1 cut(s)	242
MspR9I	CCNGG	6 cut(s)	311, 401, 477, 502, 778, 933
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	6 cut(s)	311, 401, 477, 502, 778, 933
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeI	CATATG	1 cut(s)	907
NdeII	GATC	4 cut(s)	17, 173, 231, 460
NlaIII	CATG	5 cut(s)	263, 548, 775, 802, 901
NlaIV	GGNNCC	2 cut(s)	344, 985
NspI	RCATGY	1 cut(s)	548
PagI	TCATGA	1 cut(s)	771
PciSI	GCTCTTC	1 cut(s)	84
PkrI	GCNGC	3 cut(s)	244, 290, 616
Psp1406I	AACGTT	2 cut(s)	29, 132
Psp6I	CCWGG	6 cut(s)	309, 399, 475, 500, 776, 931
PspGI	CCWGG	6 cut(s)	309, 399, 475, 500, 776, 931
PspN4I	GGNNCC	2 cut(s)	344, 985
PspPI	GGNCC	1 cut(s)	479
PsuI	RGATCY	2 cut(s)	17, 460
RsaI	GTAC	5 cut(s)	360, 654, 942, 976, 1011
RsaNI	GTAC	5 cut(s)	359, 653, 941, 975, 1010
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	4 cut(s)	203, 366, 563, 1021
SatI	GCNGC	3 cut(s)	243, 289, 615
Sau3AI	GATC	4 cut(s)	17, 173, 231, 460
Sau96I	GGNCC	1 cut(s)	479
ScaI	AGTACT	1 cut(s)	976
ScrFI	CCNGG	6 cut(s)	311, 401, 477, 502, 778, 933
SexAI	ACCWGGT	1 cut(s)	475
SfaNI	GCATC	3 cut(s)	254, 777, 988
SinI	GGWCC	1 cut(s)	479
Sse9I	AATT	6 cut(s)	118, 266, 301, 411, 434, 489
SsiI	CCGC	1 cut(s)	242
SspI	AATATT	1 cut(s)	848
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	6 cut(s)	309, 399, 475, 500, 776, 931
TaaI	ACNGT	9 cut(s)	256, 296, 339, 394, 643, 761, 821, 863, 1016
TaiI	ACGT	2 cut(s)	32, 135
TaqI	TCGA	2 cut(s)	172, 234
TasI	AATT	6 cut(s)	118, 266, 301, 411, 434, 489
TatI	WGTACW	2 cut(s)	940, 974
TauI	GCSGC	1 cut(s)	245
Tru1I	TTAA	4 cut(s)	203, 366, 563, 1021
Tru9I	TTAA	4 cut(s)	203, 366, 563, 1021
TscAI	CASTG	2 cut(s)	344, 646
TseI	GCWGC	2 cut(s)	288, 614
TspDTI	ATGAA	9 cut(s)	125, 248, 336, 822, 828, 858, 867, 885, 924
TspRI	CASTG	2 cut(s)	344, 646
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	3 cut(s)	118, 434, 489
XceI	RCATGY	1 cut(s)	548
XspI	CTAG	1 cut(s)	93
ZrmI	AGTACT	1 cut(s)	976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.