Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002509

Physical Location & Seq

Genomic Coordinates Reverse (-)

4092485 .. 4094188

Gene Structure 1704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G058700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGAAGCCTTTGTTTTAACAACGTCGGAGACAGCAGGAATTGGGATCCAAACAACAGAGACAGCAGAAACTGTTCATGTTCAATTCCAATTGCACAAGGAGTGCAACTTTGGTGAGAGTTTCCTCCTGGTGGGAAATGAACCTATCATGGGAGAGTGGAACCCTGCAAGTGCTATACCTCTGAACTGGTCAGATGGAAACATTTGGACCGTTGAGCTGGATATGCCAGTTGGCATAGCAGTCCAATACAAGTTTATACTGAAAAAAATCACAGGAGATCTATCGTGGCAACCCGGTCCAGACCGAATTCTTCATACCTGGAACACCAAGAACAATATAGCCATTGCTGAAGACTGGAAAGATTCTGAACTTCAGAAAATTAGTGAAGTGCAAATTATGAATCAAAACGAGGCGCTACTTGTAAACCCCGGCTTGGGACCAATTGTTCCTGGGAATGTGACTCTTCCCGGAGAAGAATCTATGCTGAATGTGAACAAGGGTGCAAAAGTTTCAGACAAGATTGCCTCTGCAGATGACAAGCCAACATTTAGCAGCAACAATGAGTTTGTTCTTGAAGAGAAGGCTATCAAATCAGCAGATGGAACTTTGCTTGGTATAAGAAAGGAGGTACGTGTTTCAGACGATGGTAAGTACGTCATGAAAGAGGAATCTATAGGGAAGATAACCCCGTCAACAGTAACAAGCAAGATTCCGGGAAGTGTGGAAGATGAAGAGACCGTGCCTACTTATGGAGGCAATATTCTGGTGCCTAGTTTGACTCCAATACAAGGGGTGCCTTATGAAGAAACAGTACCCAAAGAACTTGGAAAACCAATATCTTCTAAAGAAACACTACCCAAAGAACTCGAAAATTCGATGGCTTCTAAAAAAGCACTTCGAAAAGAACTTGGAATATCAATGTCTGCTCAAGAAGCACTTCCAAAAGAACTTGGAATATCAAAGTCTTCTGAAGAATCACTTCCAAACGAACTCGGAAGATACATGTCTTCTGAAGAACCACTTCCAAAAGAACTCGGAAGATCCATGTCTTTTGAAGAAGCACTTCCAGAAGAACTCGGAATATCCATTTCTTCTGAAGAAGCACTTCCAAACGAACTTGGAAAATCAATGACCTCTAAAGAAGCACTTCCGAAAGAAGTTGGAAGATCGATGTCTTCTGAAGCAGTACTACCCAAAGAACTCGGAAAATCCATCACTAGTGATGGGTACAATTCGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20

Protein Analysis

414

Amino Acids

44.88

Weight (kDa)

4.67

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01260 AT5G01260 AT5G01260
fragaria_vesca	FvH4_3g38430 FvH4_6g11650 FvH4_6g11650 FvH4_6g11650
malus_domestica	MD04G1150500.v1.1 MD12G1164600.v1.1
prunus_persica	Prupe.6G058700_v2.0.a1 Prupe.6G275300_v2.0.a1 Prupe.6G275300_v2.0.a1
pyrus_communis	pycom04g13610 pycom04g13620 pycom11g06380 pycom12g15750
rosa_chinensis	RchiOBHm_Chr3g0463311
rosa_laevigata	RLG00000024791 RLG00000036036
rosa_multiflora	Rmu_co8319585.1_g000001 Rmu_sc0000853.1_g000034 Rmu_sc0000923.1_g000002 Rmu_sc0040359.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011670 Rroxscaffold_6G00416670
rosa_rugosa	Rorug03G0063800 Rorug03G0063900 Rorug03G0064000 Rorug03G0064100 Rorug05G0396200
rosa_samantha	Rh3AG121700 Rh3BG126200 Rh3CG128100 Rh3DG127300 Rh5AG452900 Rh5BG471900 Rh5CG494300 Rh5DG484400
rosa_wichuraiana	Rw0G006070 Rw3G010340 Rw5G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	766, 793
AclWI	GGATC	3 cut(s)	40, 53, 1035
AcsI	RAATTY	2 cut(s)	306, 871
AcuI	CTGAAG	6 cut(s)	356, 369, 990, 1032, 1116, 1200
AfaI	GTAC	5 cut(s)	630, 653, 813, 1188, 1229
AfiI	CCNNNNNNNGG	6 cut(s)	130, 149, 433, 434, 749, 788
AflIII	ACRYGT	2 cut(s)	631, 1002
AgsI	TTSAA	3 cut(s)	83, 575, 1055
AhlI	ACTAGT	1 cut(s)	1217
AjnI	CCWGG	3 cut(s)	126, 317, 448
AloI	GAACNNNNNNTCC	2 cut(s)	429, 461
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw26I	GTCTC	3 cut(s)	23, 53, 728
AlwI	GGATC	3 cut(s)	40, 53, 1035
AlwNI	CAGNNNCTG	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	552
ApoI	RAATTY	2 cut(s)	306, 871
Asp700I	GAANNNNTTC	7 cut(s)	72, 936, 978, 1020, 1062, 1104, 1146
AspLEI	GCGC	1 cut(s)	415
AspS9I	GGNCC	3 cut(s)	207, 296, 437
AsuC2I	CCSGG	4 cut(s)	294, 429, 468, 714
AsuHPI	GGTGA	1 cut(s)	125
AsuII	TTCGAA	1 cut(s)	898
AvaII	GGWCC	3 cut(s)	207, 296, 437
BamHI	GGATCC	1 cut(s)	45
BanI	GGYRCC	2 cut(s)	766, 793
BarI	GAAGNNNNNNTAC	4 cut(s)	795, 827, 1173, 1205
BbsI	GAAGAC	4 cut(s)	357, 957, 999, 1167
BbvI	GCAGC	1 cut(s)	564
BccI	CCATC	6 cut(s)	188, 593, 638, 871, 1217, 1220
BciT130I	CCWGG	3 cut(s)	128, 319, 450
BcnI	CCSGG	4 cut(s)	294, 429, 468, 714
BcoDI	GTCTC	3 cut(s)	23, 53, 728
BcuI	ACTAGT	1 cut(s)	1217
BfaI	CTAG	2 cut(s)	771, 1218
BfmI	CTRYAG	2 cut(s)	528, 672
BfoI	RGCGCY	1 cut(s)	416
BglII	AGATCT	1 cut(s)	277
BisI	GCNGC	1 cut(s)	553
BlsI	GCNGC	1 cut(s)	554
BmcAI	AGTACT	1 cut(s)	1188
Bme1390I	CCNGG	7 cut(s)	128, 294, 319, 429, 450, 468, 714
Bme18I	GGWCC	3 cut(s)	207, 296, 437
BmgT120I	GGNCC	3 cut(s)	207, 296, 437
BmiI	GGNNCC	5 cut(s)	47, 161, 438, 768, 795
BmrFI	CCNGG	7 cut(s)	128, 294, 319, 429, 450, 468, 714
BpiI	GAAGAC	4 cut(s)	357, 957, 999, 1167
Bpu14I	TTCGAA	1 cut(s)	898
BpuEI	CTTGAG	1 cut(s)	912
BpuMI	CCSGG	4 cut(s)	294, 429, 468, 714
Bsa29I	ATCGAT	1 cut(s)	1169
BsaAI	YACGTR	1 cut(s)	632
BsaI	GGTCTC	1 cut(s)	728
BsaJI	CCNNGG	2 cut(s)	427, 449
Bsc4I	CCNNNNNNNGG	6 cut(s)	130, 149, 433, 434, 749, 788
Bse1I	ACTGG	3 cut(s)	191, 227, 359
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	3 cut(s)	128, 319, 450
BseCI	ATCGAT	1 cut(s)	1169
BseDI	CCNNGG	2 cut(s)	427, 449
BseLI	CCNNNNNNNGG	6 cut(s)	130, 149, 433, 434, 749, 788
BseMI	GCAATG	1 cut(s)	342
BseNI	ACTGG	3 cut(s)	191, 227, 359
BseXI	GCAGC	1 cut(s)	564
BshNI	GGYRCC	2 cut(s)	766, 793
BshVI	ATCGAT	1 cut(s)	1169
BsiSI	CCGG	4 cut(s)	294, 429, 468, 713
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	6 cut(s)	130, 149, 433, 434, 749, 788
BsmAI	GTCTC	3 cut(s)	23, 53, 728
BsmFI	GGGAC	1 cut(s)	450
Bso31I	GGTCTC	1 cut(s)	728
Bsp119I	TTCGAA	1 cut(s)	898
Bsp143I	GATC	4 cut(s)	45, 277, 1040, 1166
BspDI	ATCGAT	1 cut(s)	1169
BspHI	TCATGA	1 cut(s)	657
BspLI	GGNNCC	5 cut(s)	47, 161, 438, 768, 795
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	3 cut(s)	40, 53, 1035
BspT104I	TTCGAA	1 cut(s)	898
BspT107I	GGYRCC	2 cut(s)	766, 793
BspTNI	GGTCTC	1 cut(s)	728
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	3 cut(s)	191, 227, 359
BssECI	CCNNGG	2 cut(s)	427, 449
BssMI	GATC	4 cut(s)	45, 277, 1040, 1166
Bst2UI	CCWGG	3 cut(s)	128, 319, 450
Bst4CI	ACNGT	5 cut(s)	73, 211, 697, 739, 811
Bst6I	CTCTTC	3 cut(s)	468, 570, 726
BstBAI	YACGTR	1 cut(s)	632
BstBI	TTCGAA	1 cut(s)	898
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	4 cut(s)	48, 280, 1043, 1169
BstMAI	GTCTC	3 cut(s)	23, 53, 728
BstMBI	GATC	4 cut(s)	45, 277, 1040, 1166
BstMWI	GCNNNNNNNGC	2 cut(s)	223, 932
BstNI	CCWGG	3 cut(s)	128, 319, 450
BstNSI	RCATGY	1 cut(s)	1006
BstSCI	CCNGG	7 cut(s)	126, 292, 317, 427, 448, 466, 712
BstSFI	CTRYAG	2 cut(s)	528, 672
BstV1I	GCAGC	1 cut(s)	564
BstV2I	GAAGAC	4 cut(s)	357, 957, 999, 1167
BstX2I	RGATCY	3 cut(s)	45, 277, 1040
BstYI	RGATCY	3 cut(s)	45, 277, 1040
Bsu15I	ATCGAT	1 cut(s)	1169
BsuTUI	ATCGAT	1 cut(s)	1169
CaiI	CAGNNNCTG	1 cut(s)	71
CciI	TCATGA	1 cut(s)	657
CfoI	GCGC	1 cut(s)	415
Cfr13I	GGNCC	3 cut(s)	207, 296, 437
ClaI	ATCGAT	1 cut(s)	1169
Csp6I	GTAC	5 cut(s)	629, 652, 812, 1187, 1228
CviAII	CATG	5 cut(s)	77, 148, 658, 1003, 1045
CviJI	RGCY	7 cut(s)	8, 217, 341, 432, 541, 584, 881
CviKI_1	RGCY	7 cut(s)	8, 217, 341, 432, 541, 584, 881
CviQI	GTAC	5 cut(s)	629, 652, 812, 1187, 1228
DpnI	GATC	4 cut(s)	47, 279, 1042, 1168
DpnII	GATC	4 cut(s)	45, 277, 1040, 1166
Eam1104I	CTCTTC	3 cut(s)	468, 570, 726
EarI	CTCTTC	3 cut(s)	468, 570, 726
Eco31I	GGTCTC	1 cut(s)	728
Eco47I	GGWCC	3 cut(s)	207, 296, 437
Eco57I	CTGAAG	6 cut(s)	356, 369, 990, 1032, 1116, 1200
EcoRI	GAATTC	1 cut(s)	306
EcoRII	CCWGG	3 cut(s)	126, 317, 448
FaeI	CATG	5 cut(s)	80, 151, 661, 1006, 1048
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	5 cut(s)	76, 147, 657, 1002, 1044
Fnu4HI	GCNGC	1 cut(s)	553
Fsp4HI	GCNGC	1 cut(s)	553
FspBI	CTAG	2 cut(s)	771, 1218
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	1 cut(s)	553
HaeII	RGCGCY	1 cut(s)	416
HapII	CCGG	4 cut(s)	294, 429, 468, 713
HhaI	GCGC	1 cut(s)	415
Hin1II	CATG	5 cut(s)	80, 151, 661, 1006, 1048
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HincII	GTYRAC	1 cut(s)	693
HindII	GTYRAC	1 cut(s)	693
HinfI	GANTC	8 cut(s)	362, 400, 460, 476, 668, 709, 778, 974
HpaII	CCGG	4 cut(s)	294, 429, 468, 713
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	3 cut(s)	424, 493, 693
Hpy188III	TCNNGA	5 cut(s)	299, 572, 658, 929, 1067
Hpy8I	GTNNAC	3 cut(s)	424, 493, 693
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	574
HpyCH4III	ACNGT	5 cut(s)	73, 211, 697, 739, 811
HpyCH4IV	ACGT	3 cut(s)	23, 631, 654
HpyCH4V	TGCA	6 cut(s)	94, 105, 167, 391, 503, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	223, 932
HpySE526I	ACGT	3 cut(s)	23, 631, 654
Hsp92II	CATG	5 cut(s)	80, 151, 661, 1006, 1048
HspAI	GCGC	1 cut(s)	413
Kzo9I	GATC	4 cut(s)	45, 277, 1040, 1166
Lsp1109I	GCAGC	1 cut(s)	564
MaeI	CTAG	2 cut(s)	771, 1218
MaeII	ACGT	3 cut(s)	23, 631, 654
MaeIII	GTNAC	2 cut(s)	457, 697
MalI	GATC	4 cut(s)	47, 279, 1042, 1168
MboI	GATC	4 cut(s)	45, 277, 1040, 1166
MfeI	CAATTG	2 cut(s)	89, 441
MflI	RGATCY	3 cut(s)	45, 277, 1040
MluCI	AATT	9 cut(s)	39, 83, 89, 306, 378, 393, 441, 871, 1231
MlyI	GAGTC	2 cut(s)	454, 772
MmeI	TCCRAC	2 cut(s)	6, 1141
MnlI	CCTC	8 cut(s)	134, 189, 403, 535, 619, 658, 746, 1144
MroXI	GAANNNNTTC	7 cut(s)	72, 936, 978, 1020, 1062, 1104, 1146
MseI	TTAA	1 cut(s)	17
MspI	CCGG	4 cut(s)	294, 429, 468, 713
MspR9I	CCNGG	7 cut(s)	128, 294, 319, 429, 450, 468, 714
MunI	CAATTG	2 cut(s)	89, 441
MvaI	CCWGG	3 cut(s)	128, 319, 450
MwoI	GCNNNNNNNGC	2 cut(s)	223, 932
NciI	CCSGG	4 cut(s)	294, 429, 468, 714
NdeII	GATC	4 cut(s)	45, 277, 1040, 1166
NlaIII	CATG	5 cut(s)	80, 151, 661, 1006, 1048
NlaIV	GGNNCC	5 cut(s)	47, 161, 438, 768, 795
NmuCI	GTSAC	1 cut(s)	457
NspI	RCATGY	1 cut(s)	1006
NspV	TTCGAA	1 cut(s)	898
PagI	TCATGA	1 cut(s)	657
PciI	ACATGT	1 cut(s)	1002
PdmI	GAANNNNTTC	7 cut(s)	72, 936, 978, 1020, 1062, 1104, 1146
PfeI	GAWTC	6 cut(s)	362, 400, 476, 668, 709, 974
PfoI	TCCNGGA	2 cut(s)	466, 712
PkrI	GCNGC	1 cut(s)	554
PleI	GAGTC	2 cut(s)	454, 772
PpsI	GAGTC	2 cut(s)	454, 772
Ppu21I	YACGTR	1 cut(s)	632
PscI	ACATGT	1 cut(s)	1002
Psp6I	CCWGG	3 cut(s)	126, 317, 448
PspGI	CCWGG	3 cut(s)	126, 317, 448
PspN4I	GGNNCC	5 cut(s)	47, 161, 438, 768, 795
PspPI	GGNCC	3 cut(s)	207, 296, 437
PstI	CTGCAG	1 cut(s)	532
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	3 cut(s)	45, 277, 1040
RsaI	GTAC	5 cut(s)	630, 653, 813, 1188, 1229
RsaNI	GTAC	5 cut(s)	629, 652, 812, 1187, 1228
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	1 cut(s)	553
Sau3AI	GATC	4 cut(s)	45, 277, 1040, 1166
Sau96I	GGNCC	3 cut(s)	207, 296, 437
ScaI	AGTACT	1 cut(s)	1188
SchI	GAGTC	2 cut(s)	454, 772
ScrFI	CCNGG	7 cut(s)	128, 294, 319, 429, 450, 468, 714
SetI	ASST	9 cut(s)	26, 145, 181, 219, 320, 630, 634, 657, 1136
SfcI	CTRYAG	2 cut(s)	528, 672
SfuI	TTCGAA	1 cut(s)	898
SinI	GGWCC	3 cut(s)	207, 296, 437
SmlI	CTYRAG	1 cut(s)	927
SmoI	CTYRAG	1 cut(s)	927
SpeI	ACTAGT	1 cut(s)	1217
Sse9I	AATT	9 cut(s)	39, 83, 89, 306, 378, 393, 441, 871, 1231
SspI	AATATT	1 cut(s)	760
SspMI	CTAG	2 cut(s)	771, 1218
StyD4I	CCNGG	7 cut(s)	126, 292, 317, 427, 448, 466, 712
TaaI	ACNGT	5 cut(s)	73, 211, 697, 739, 811
TaiI	ACGT	3 cut(s)	26, 634, 657
TaqI	TCGA	4 cut(s)	867, 875, 898, 1169
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	9 cut(s)	39, 83, 89, 306, 378, 393, 441, 871, 1231
TatI	WGTACW	1 cut(s)	1186
TfiI	GAWTC	6 cut(s)	362, 400, 476, 668, 709, 974
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	1 cut(s)	552
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	7 cut(s)	65, 153, 302, 413, 674, 744, 816
VpaK11BI	GGWCC	3 cut(s)	207, 296, 437
XapI	RAATTY	2 cut(s)	306, 871
XceI	RCATGY	1 cut(s)	1006
XmnI	GAANNNNTTC	7 cut(s)	72, 936, 978, 1020, 1062, 1104, 1146
XspI	CTAG	2 cut(s)	771, 1218
ZrmI	AGTACT	1 cut(s)	1188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.