Prupe.6G275300_v2.0.a1

Starch binding domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
25962890 .. 25966451
3562 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G275300.2

Sequence Viewer

Length: 1557 bp
ATGAAGACCCTGGTGAGCCCGAGTTCGAGGGTGGTCGTGGACAAGCACTGGGACAGAGAGAAGAATGCCTTTGTTCACAGGCTTGAAGCTTGTTTTCTTAGGCCTAAGCGAAGTGTGGATTTTCGGTTCTTGAATTTGGTGTGTTTTCTGCAACAGAGCAAGCCTGTCAAGCCAGTCAAGCCAGTCATTTGTCTCTCATCAAAAACCCAGACTGAATTGGAGGTGACAGATGATCAAATCCAAGAAACACATCATACAAAAACTATTCATGTCAAATTCCAGTTGCAGAAAGAGTGCTCGTTTGGGCAGCAGTTCCTCATAGTAGGGGATGATCCTATGTTCGGTTTGTGGGACCCTTCAAGCGCAATACCGATGAACTGGTCAGATGGGAATGTGTGGACCGTTGAGCTGGATATACCAGTTGGGAAATCGGTCCAGTTCAAGTTCATACTCAAAGAAATCACAGGGAATATCTTGTGGCAGCCTGGCCCAGATCGAATTTTCCAGACCTGGGAAACCAAGAACACAATCACTGTTTGTGAAGATTGGGCAGATGCTGAACTTCAGAAAATAATAGAGGAAAATCAAGCTAATCAAAGTGTTGGTTCTAATGTTAACTCAGATATGTCGATTGTAGCTGAGAACCTGACTCTTCCAGAAGAACTGGCTTTGAATATCACCAAGGAACCAACCATTGCTGATAGTAGCACTGATCTAGCAGAGAAACCATTGGTGGAACCATGGAAGGAACAAATTGTTGCTGATAAAGTTTCTCCTTCACAAGAGGAACCCAAAACTACTGTTGCAGAGAATGTTACCCCAAAATGGCCAAAGTCATATATGGAACCATGCGAGGAACAAATTGCTGCAAGAACTAAAGTGGTTGACGAAGAGAGAGTTATTTTTCCAAGTGAGGAGTATGCAGCCATCTCCAATAAGGAGTTGTTGGTGGCAGACAACATTTTTGGCAATAATGGCAGAGCTGCAACAGAAAGGAACCTTTCAAGCACTCACATTGAGGGAAGCCTAATCAACTATGAAGAAGGTCATGTTCTGGTACCTGGCTTGACTGCTTCACCAGCTATTCCAACTGAAGAAGCAAAGAAAGAGAAAGTTGAGAAACAGATGTCTTTTGATGATGGCTCAGTTGGAGCCTTCGAAGCCAAGGATCTTAAGATGCCAGAGATTCAGCTAGGCTTGAAGCAAGAGCCATACAGTGACCCACCTCAAGCAGAAACAACTGCTATCATCAAGGATAAAGTACAGAGTTTCGACGATGAACTTGAGCAAAGCCCTGCTAAAAATGCAGAACATTCCAACTCAGAGTCAGCCAACGGTAGTGTCTTGCACAATGACCCACCTCAAGAAGAAACAAATGCCATGATCAACGATAACGAAGAGAAGTCTGAGGACGATCAACTCAACCAAATGCATCACCCTGCTAAATGGGCAGACCAGTCTGACTCAGAGCCAATCAACGATAATGTCTTAGACAATGACGTACAATGGGGTCGTAAAATGCTGCAGAAATTTCTGAATAATTTCCGATTGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

519

Amino Acids

58.43

Weight (kDa)

4.7

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1057
AccB1I GGYRCC 1 cut(s) 1057
AclWI GGATC 2 cut(s) 326, 1176
AcoI YGGCCR 1 cut(s) 827
AcsI RAATTY 4 cut(s) 133, 275, 498, 1529
AcuI CTGAAG 2 cut(s) 548, 1113
AfaI GTAC 3 cut(s) 1059, 1263, 1503
AfiI CCNNNNNNNGG 3 cut(s) 341, 511, 825
AflII CTTAAG 1 cut(s) 1172
AgsI TTSAA 7 cut(s) 86, 133, 360, 442, 673, 1005, 1201
AjnI CCWGG 4 cut(s) 9, 484, 509, 1060
AloI GAACNNNNNNTCC 2 cut(s) 110, 142
AluBI AGCT 7 cut(s) 89, 409, 590, 638, 983, 1082, 1192
AluI AGCT 7 cut(s) 89, 409, 590, 638, 983, 1082, 1192
Alw21I GWGCWC 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 2 cut(s) 326, 1176
AlwNI CAGNNNCTG 1 cut(s) 557
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 3 cut(s) 101, 487, 827
ApeKI GCWGC 6 cut(s) 307, 481, 866, 923, 983, 1522
ApoI RAATTY 4 cut(s) 133, 275, 498, 1529
ArsI GACNNNNNNTTYG 2 cut(s) 947, 979
Asp700I GAANNNNTTC 1 cut(s) 1541
Asp718I GGTACC 1 cut(s) 1057
AspLEI GCGC 1 cut(s) 365
AspS9I GGNCC 4 cut(s) 352, 399, 433, 488
AsuHPI GGTGA 5 cut(s) 25, 235, 670, 1068, 1427
AsuII TTCGAA 1 cut(s) 1158
AvaI CYCGRG 1 cut(s) 19
AvaII GGWCC 3 cut(s) 352, 399, 433
BalI TGGCCA 1 cut(s) 829
BanI GGYRCC 1 cut(s) 1057
BanII GRGCYC 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 299
BbvI GCAGC 6 cut(s) 319, 493, 853, 935, 970, 1509
BccI CCATC 3 cut(s) 380, 935, 1133
BciT130I CCWGG 4 cut(s) 11, 486, 511, 1062
BclI TGATCA 2 cut(s) 232, 1383
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 2 cut(s) 716, 1193
BfmI CTRYAG 1 cut(s) 1523
BfrI CTTAAG 1 cut(s) 1172
BisI GCNGC 6 cut(s) 308, 482, 867, 924, 984, 1523
BlsI GCNGC 6 cut(s) 309, 483, 868, 925, 985, 1524
Bme1390I CCNGG 4 cut(s) 11, 486, 511, 1062
Bme18I GGWCC 3 cut(s) 352, 399, 433
BmeT110I CYCGRG 1 cut(s) 19
BmgT120I GGNCC 4 cut(s) 352, 399, 433, 488
BmiI GGNNCC 9 cut(s) 353, 354, 687, 738, 789, 846, 998, 1059, 1153
BmrFI CCNGG 4 cut(s) 11, 486, 511, 1062
BmrI ACTGGG 1 cut(s) 58
BmsI GCATC 3 cut(s) 544, 1167, 1441
BmuI ACTGGG 1 cut(s) 58
BpiI GAAGAC 1 cut(s) 11
Bpu10I CCTNAGC 1 cut(s) 105
Bpu14I TTCGAA 1 cut(s) 1158
BpuEI CTTGAG 3 cut(s) 1212, 1304, 1347
BsaJI CCNNGG 5 cut(s) 9, 510, 681, 740, 1164
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 511, 825
Bse1I ACTGG 9 cut(s) 53, 173, 182, 280, 383, 419, 436, 669, 1456
Bse3DI GCAATG 1 cut(s) 693
BseBI CCWGG 4 cut(s) 11, 486, 511, 1062
BseDI CCNNGG 5 cut(s) 9, 510, 681, 740, 1164
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 3 cut(s) 341, 511, 825
BseMI GCAATG 1 cut(s) 693
BseMII CTCAG 6 cut(s) 630, 633, 1158, 1335, 1398, 1479
BseNI ACTGG 9 cut(s) 53, 173, 182, 280, 383, 419, 436, 669, 1456
BseRI GAGGAG 1 cut(s) 929
BseXI GCAGC 6 cut(s) 319, 493, 853, 935, 970, 1509
BshFI GGCC 3 cut(s) 103, 489, 829
BshNI GGYRCC 1 cut(s) 1057
BsiHKAI GWGCWC 1 cut(s) 299
BsiHKCI CYCGRG 1 cut(s) 19
BslFI GGGAC 2 cut(s) 65, 365
BslI CCNNNNNNNGG 3 cut(s) 341, 511, 825
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 2 cut(s) 65, 365
BsmI GAATGC 1 cut(s) 70
BsnI GGCC 3 cut(s) 103, 489, 829
BsoBI CYCGRG 1 cut(s) 19
Bsp119I TTCGAA 1 cut(s) 1158
Bsp1286I GDGCHC 2 cut(s) 20, 299
Bsp143I GATC 7 cut(s) 232, 331, 493, 712, 1168, 1383, 1414
Bsp19I CCATGG 1 cut(s) 740
BspANI GGCC 3 cut(s) 103, 489, 829
BspCNI CTCAG 6 cut(s) 631, 632, 1157, 1334, 1399, 1478
BspLI GGNNCC 9 cut(s) 353, 354, 687, 738, 789, 846, 998, 1059, 1153
BspMAI CTGCAG 1 cut(s) 1527
BspPI GGATC 2 cut(s) 326, 1176
BspT104I TTCGAA 1 cut(s) 1158
BspT107I GGYRCC 1 cut(s) 1057
BspTI CTTAAG 1 cut(s) 1172
BsrDI GCAATG 1 cut(s) 693
BsrI ACTGG 9 cut(s) 53, 173, 182, 280, 383, 419, 436, 669, 1456
BssECI CCNNGG 5 cut(s) 9, 510, 681, 740, 1164
BssMI GATC 7 cut(s) 232, 331, 493, 712, 1168, 1383, 1414
BssT1I CCWWGG 3 cut(s) 681, 740, 1164
Bst2UI CCWGG 4 cut(s) 11, 486, 511, 1062
Bst4CI ACNGT 5 cut(s) 403, 535, 802, 1217, 1337
Bst6I CTCTTC 3 cut(s) 657, 885, 1392
BstAFI CTTAAG 1 cut(s) 1172
BstBI TTCGAA 1 cut(s) 1158
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 9 cut(s) 98, 105, 619, 639, 1144, 1321, 1407, 1465, 1489
BstDSI CCRYGG 1 cut(s) 740
BstF5I GGATG 1 cut(s) 334
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 7 cut(s) 235, 334, 496, 715, 1171, 1386, 1417
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 7 cut(s) 232, 331, 493, 712, 1168, 1383, 1414
BstMWI GCNNNNNNNGC 7 cut(s) 169, 178, 975, 1079, 1160, 1304, 1448
BstNI CCWGG 4 cut(s) 11, 486, 511, 1062
BstSCI CCNGG 4 cut(s) 9, 484, 509, 1060
BstSFI CTRYAG 1 cut(s) 1523
BstV1I GCAGC 6 cut(s) 319, 493, 853, 935, 970, 1509
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 1168
BstYI RGATCY 1 cut(s) 1168
BsuRI GGCC 3 cut(s) 103, 489, 829
BtgI CCRYGG 1 cut(s) 740
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 4 cut(s) 46, 531, 708, 1222
Cac8I GCNNGC 1 cut(s) 161
CaiI CAGNNNCTG 1 cut(s) 557
CfoI GCGC 1 cut(s) 365
Cfr13I GGNCC 4 cut(s) 352, 399, 433, 488
Csp6I GTAC 3 cut(s) 1058, 1262, 1502
CviAII CATG 5 cut(s) 269, 741, 849, 1049, 1381
CviQI GTAC 3 cut(s) 1058, 1262, 1502
DdeI CTNAG 9 cut(s) 98, 105, 619, 639, 1144, 1321, 1407, 1465, 1489
DpnI GATC 7 cut(s) 234, 333, 495, 714, 1170, 1385, 1416
DpnII GATC 7 cut(s) 232, 331, 493, 712, 1168, 1383, 1414
EaeI YGGCCR 1 cut(s) 827
Eam1104I CTCTTC 3 cut(s) 657, 885, 1392
EarI CTCTTC 3 cut(s) 657, 885, 1392
Eco130I CCWWGG 3 cut(s) 681, 740, 1164
Eco147I AGGCCT 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 20
Eco47I GGWCC 3 cut(s) 352, 399, 433
Eco57I CTGAAG 2 cut(s) 548, 1113
Eco88I CYCGRG 1 cut(s) 19
EcoO109I RGGNCCY 1 cut(s) 352
EcoRII CCWGG 4 cut(s) 9, 484, 509, 1060
EcoT14I CCWWGG 3 cut(s) 681, 740, 1164
EcoT22I ATGCAT 1 cut(s) 1434
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 3 cut(s) 681, 740, 1164
FaeI CATG 5 cut(s) 272, 744, 852, 1052, 1384
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FaqI GGGAC 2 cut(s) 65, 365
FatI CATG 5 cut(s) 268, 740, 848, 1048, 1380
FbaI TGATCA 2 cut(s) 232, 1383
Fnu4HI GCNGC 6 cut(s) 308, 482, 867, 924, 984, 1523
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 6 cut(s) 308, 482, 867, 924, 984, 1523
FspBI CTAG 2 cut(s) 716, 1193
GlaI GCGC 1 cut(s) 364
GluI GCNGC 6 cut(s) 308, 482, 867, 924, 984, 1523
HaeIII GGCC 3 cut(s) 103, 489, 829
HhaI GCGC 1 cut(s) 365
Hin1II CATG 5 cut(s) 272, 744, 852, 1052, 1384
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HincII GTYRAC 2 cut(s) 616, 886
HindII GTYRAC 2 cut(s) 616, 886
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 4 cut(s) 649, 1186, 1325, 1463
HpaI GTTAAC 1 cut(s) 616
HphI GGTGA 5 cut(s) 25, 235, 670, 1068, 1427
Hpy166II GTNNAC 5 cut(s) 40, 76, 399, 616, 886
Hpy188I TCNGA 9 cut(s) 385, 567, 622, 1324, 1408, 1462, 1468, 1536, 1547
Hpy188III TCNNGA 4 cut(s) 130, 505, 656, 1364
Hpy8I GTNNAC 5 cut(s) 40, 76, 399, 616, 886
Hpy99I CGWCG 1 cut(s) 1277
HpyAV CCTTC 5 cut(s) 366, 739, 786, 1037, 1165
HpyCH4III ACNGT 5 cut(s) 403, 535, 802, 1217, 1337
HpyCH4IV ACGT 1 cut(s) 1500
HpyF10VI GCNNNNNNNGC 7 cut(s) 169, 178, 975, 1079, 1160, 1304, 1448
HpyF3I CTNAG 9 cut(s) 98, 105, 619, 639, 1144, 1321, 1407, 1465, 1489
HpySE526I ACGT 1 cut(s) 1500
Hsp92II CATG 5 cut(s) 272, 744, 852, 1052, 1384
HspAI GCGC 1 cut(s) 363
KflI GGGWCCC 1 cut(s) 352
KpnI GGTACC 1 cut(s) 1061
Ksp22I TGATCA 2 cut(s) 232, 1383
KspAI GTTAAC 1 cut(s) 616
Kzo9I GATC 7 cut(s) 232, 331, 493, 712, 1168, 1383, 1414
LmnI GCTCC 1 cut(s) 1151
Lsp1109I GCAGC 6 cut(s) 319, 493, 853, 935, 970, 1509
LweI GCATC 3 cut(s) 544, 1167, 1441
MaeI CTAG 2 cut(s) 716, 1193
MaeII ACGT 1 cut(s) 1500
MaeIII GTNAC 3 cut(s) 223, 814, 1217
MalI GATC 7 cut(s) 234, 333, 495, 714, 1170, 1385, 1416
MboI GATC 7 cut(s) 232, 331, 493, 712, 1168, 1383, 1414
MflI RGATCY 1 cut(s) 1168
MhlI GDGCHC 2 cut(s) 20, 299
MlsI TGGCCA 1 cut(s) 829
MluCI AATT 8 cut(s) 133, 215, 275, 498, 753, 861, 1529, 1540
MluNI TGGCCA 1 cut(s) 829
MlyI GAGTC 3 cut(s) 643, 1334, 1457
MmeI TCCRAC 3 cut(s) 1112, 1129, 1341
Mox20I TGGCCA 1 cut(s) 829
Mph1103I ATGCAT 1 cut(s) 1434
MroXI GAANNNNTTC 1 cut(s) 1541
MscI TGGCCA 1 cut(s) 829
MseI TTAA 2 cut(s) 615, 1173
Msp20I TGGCCA 1 cut(s) 829
MspCI CTTAAG 1 cut(s) 1172
MspR9I CCNGG 4 cut(s) 11, 486, 511, 1062
Mva1269I GAATGC 1 cut(s) 70
MvaI CCWGG 4 cut(s) 11, 486, 511, 1062
MwoI GCNNNNNNNGC 7 cut(s) 169, 178, 975, 1079, 1160, 1304, 1448
NcoI CCATGG 1 cut(s) 740
NdeII GATC 7 cut(s) 232, 331, 493, 712, 1168, 1383, 1414
NlaIII CATG 5 cut(s) 272, 744, 852, 1052, 1384
NlaIV GGNNCC 9 cut(s) 353, 354, 687, 738, 789, 846, 998, 1059, 1153
NmuCI GTSAC 2 cut(s) 223, 1217
NsiI ATGCAT 1 cut(s) 1434
NspV TTCGAA 1 cut(s) 1158
PceI AGGCCT 1 cut(s) 103
PctI GAATGC 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 1541
PfeI GAWTC 1 cut(s) 1186
PkrI GCNGC 6 cut(s) 309, 483, 868, 925, 985, 1524
PleI GAGTC 3 cut(s) 643, 1333, 1457
PpsI GAGTC 3 cut(s) 643, 1333, 1457
PpuMI RGGWCCY 1 cut(s) 352
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 4 cut(s) 9, 484, 509, 1060
PspGI CCWGG 4 cut(s) 9, 484, 509, 1060
PspN4I GGNNCC 9 cut(s) 353, 354, 687, 738, 789, 846, 998, 1059, 1153
PspPI GGNCC 4 cut(s) 352, 399, 433, 488
PspPPI RGGWCCY 1 cut(s) 352
PstI CTGCAG 1 cut(s) 1527
PstNI CAGNNNCTG 1 cut(s) 557
PsuI RGATCY 1 cut(s) 1168
RsaI GTAC 3 cut(s) 1059, 1263, 1503
RsaNI GTAC 3 cut(s) 1058, 1262, 1502
SaqAI TTAA 2 cut(s) 615, 1173
SatI GCNGC 6 cut(s) 308, 482, 867, 924, 984, 1523
Sau3AI GATC 7 cut(s) 232, 331, 493, 712, 1168, 1383, 1414
Sau96I GGNCC 4 cut(s) 352, 399, 433, 488
SchI GAGTC 3 cut(s) 643, 1334, 1457
ScrFI CCNGG 4 cut(s) 11, 486, 511, 1062
SduI GDGCHC 2 cut(s) 20, 299
SfaNI GCATC 3 cut(s) 544, 1167, 1441
SfcI CTRYAG 1 cut(s) 1523
SfuI TTCGAA 1 cut(s) 1158
SinI GGWCC 3 cut(s) 352, 399, 433
SmlI CTYRAG 4 cut(s) 1172, 1227, 1283, 1362
SmoI CTYRAG 4 cut(s) 1172, 1227, 1283, 1362
Sse9I AATT 8 cut(s) 133, 215, 275, 498, 753, 861, 1529, 1540
SseBI AGGCCT 1 cut(s) 103
SspMI CTAG 2 cut(s) 716, 1193
StuI AGGCCT 1 cut(s) 103
StyD4I CCNGG 4 cut(s) 9, 484, 509, 1060
StyI CCWWGG 3 cut(s) 681, 740, 1164
TaaI ACNGT 5 cut(s) 403, 535, 802, 1217, 1337
TaiI ACGT 1 cut(s) 1503
TaqI TCGA 5 cut(s) 26, 496, 629, 1158, 1272
TaqII GACCGA 1 cut(s) 421
TasI AATT 8 cut(s) 133, 215, 275, 498, 753, 861, 1529, 1540
TatI WGTACW 1 cut(s) 1261
TfiI GAWTC 1 cut(s) 1186
Tru1I TTAA 2 cut(s) 615, 1173
Tru9I TTAA 2 cut(s) 615, 1173
TscAI CASTG 4 cut(s) 53, 538, 715, 1222
TseFI GTSAC 2 cut(s) 223, 1217
TseI GCWGC 6 cut(s) 307, 481, 866, 923, 983, 1522
Tsp45I GTSAC 2 cut(s) 223, 1217
TspDTI ATGAA 6 cut(s) 17, 257, 389, 436, 1053, 1293
TspRI CASTG 4 cut(s) 53, 538, 715, 1222
Vha464I CTTAAG 1 cut(s) 1172
VpaK11BI GGWCC 3 cut(s) 352, 399, 433
XapI RAATTY 4 cut(s) 133, 275, 498, 1529
XmnI GAANNNNTTC 1 cut(s) 1541
XspI CTAG 2 cut(s) 716, 1193
Zsp2I ATGCAT 1 cut(s) 1434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.