Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002509

Physical Location & Seq

Genomic Coordinates Reverse (-)

14677765 .. 14679355

Gene Structure 1591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00011670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAAGCCTTTGCAAGATCTTCCACAACGTTGTTTGCAAAGGCTAATACTAACAAGCGTCCATCGCCTGTAAAAGCTCTTCTGAGTCGATCTAGCATTTGCTTTGTAAGGGTTTGGAATTCAAATGCAAATGTTCATCATCATACTTCTTTGCTTAGGCACAAAGCTACTCGATCGGTTGCCTCATCTGAAACAAGGGTCTTAAGGAATCCAGACTCAGCAGGAATTGGGATCGAACCAGCTGCGCCATCAAAAACCGTTCATGTCCAATTCCAATTACACAAGAAGTGCCGCTTCGGTGATAATTTTCTGTTAGTAGGGAATGAACCTGTCATTGGACAGTGGAACCCTTCAAGTGCTATACCCCTTAACTGGTCAGATGGAAACATTTGGACAGTTGACCTGGACATACCAATTGACAGAGCAATCCAGTTCAAGTTTATACTAAAGAAAAGCACAGGAGATCTGTTGTGGCAACCTGGTCCAGACCGAATTCTTCACACCTGGGATACAAACAGCACTATAACCATAGCCGAAGACTGGAAAAATGCGAAACTTCAGAAATTAACTGAAAAGAAAATTGTCGGTCAAAATGAGACGCTACTTACAAACCAGGCTGTGACTTATAGCATACCAACTTATAGCAACAAGAATGAGTTTGCTTTCAAAGAGAGGGCGTTTGGTTCTGAAAAGGGAACTCTGCTTCAGGAAAGCAAAGCAGTTTGCATTTCAGATGACGGTGTTTGCATCATGACAAGACCAACATCCTTAGGAAGCATGGATGAAGATGAATACTGTGAAGTTGAATATTATGACGATGAATATTACGATGATGACTGTGAATATGAAGATAGATATGAAGACGAAGGCATCATGTTTACTTATGAAGGAGGCCGTGTTCTCGTGCCTGGTTTAGTACAAGGGGTAACTGGAAAAACCATTGATATCAGTGCTGATGGCTCGATTGTGATTGATGCGAGAGGGGAACACAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

332

Amino Acids

37.16

Weight (kDa)

5.36

Isoelectric Point (pI)

32.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBM_20	PF00686	86 - 174	9.6e-20	Starch binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002509)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01260 AT5G01260 AT5G01260
fragaria_vesca	FvH4_3g38430 FvH4_6g11650 FvH4_6g11650 FvH4_6g11650
malus_domestica	MD04G1150500.v1.1 MD12G1164600.v1.1
prunus_persica	Prupe.6G058700_v2.0.a1 Prupe.6G275300_v2.0.a1 Prupe.6G275300_v2.0.a1
pyrus_communis	pycom04g13610 pycom04g13620 pycom11g06380 pycom12g15750
rosa_chinensis	RchiOBHm_Chr3g0463311
rosa_laevigata	RLG00000024791 RLG00000036036
rosa_multiflora	Rmu_co8319585.1_g000001 Rmu_sc0000853.1_g000034 Rmu_sc0000923.1_g000002 Rmu_sc0040359.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011670 Rroxscaffold_6G00416670
rosa_rugosa	Rorug03G0063800 Rorug03G0063900 Rorug03G0064000 Rorug03G0064100 Rorug05G0396200
rosa_samantha	Rh3AG121700 Rh3BG126200 Rh3CG128100 Rh3DG127300 Rh5AG452900 Rh5BG471900 Rh5CG494300 Rh5DG484400
rosa_wichuraiana	Rw0G006070 Rw3G010340 Rw5G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	292
AclI	AACGTT	1 cut(s)	29
AclWI	GGATC	1 cut(s)	239
AcsI	RAATTY	2 cut(s)	118, 492
AcuI	CTGAAG	2 cut(s)	542, 689
AfaI	GTAC	1 cut(s)	918
AfiI	CCNNNNNNNGG	3 cut(s)	335, 372, 540
AflII	CTTAAG	1 cut(s)	202
AgsI	TTSAA	5 cut(s)	123, 354, 436, 667, 806
AjnI	CCWGG	5 cut(s)	402, 478, 503, 612, 907
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AloI	GAACNNNNNNTCC	2 cut(s)	882, 914
AluBI	AGCT	3 cut(s)	77, 167, 242
AluI	AGCT	3 cut(s)	77, 167, 242
Alw26I	GTCTC	1 cut(s)	590
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	1 cut(s)	892
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	2 cut(s)	118, 492
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	482
AxyI	CCTNAGG	1 cut(s)	769
BarI	GAAGNNNNNNTAC	2 cut(s)	63, 95
BauI	CACGAG	1 cut(s)	902
BbsI	GAAGAC	2 cut(s)	543, 867
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	4 cut(s)	70, 256, 374, 950
BceAI	ACGGC	1 cut(s)	879
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	5 cut(s)	404, 480, 505, 614, 909
BciVI	GTATCC	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	590
BfaI	CTAG	1 cut(s)	93
BfrI	CTTAAG	1 cut(s)	202
BfuI	GTATCC	1 cut(s)	502
BglII	AGATCT	2 cut(s)	17, 463
BisI	GCNGC	2 cut(s)	243, 292
BlsI	GCNGC	2 cut(s)	244, 293
Bme1390I	CCNGG	5 cut(s)	404, 480, 505, 614, 909
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	1 cut(s)	347
BmrFI	CCNGG	5 cut(s)	404, 480, 505, 614, 909
BmsI	GCATC	3 cut(s)	756, 879, 964
BpiI	GAAGAC	2 cut(s)	543, 867
Bpu10I	CCTNAGC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	504
BsaXI	ACNNNNNCTCC	2 cut(s)	882, 912
Bsc4I	CCNNNNNNNGG	3 cut(s)	335, 372, 540
Bse1I	ACTGG	4 cut(s)	377, 430, 545, 934
Bse21I	CCTNAGG	1 cut(s)	769
BseBI	CCWGG	5 cut(s)	404, 480, 505, 614, 909
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	2 cut(s)	764, 787
BseLI	CCNNNNNNNGG	3 cut(s)	335, 372, 540
BseMII	CTCAG	2 cut(s)	74, 231
BseNI	ACTGG	4 cut(s)	377, 430, 545, 934
BseXI	GCAGC	1 cut(s)	229
Bsh1285I	CGRYCG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	894
BsiEI	CGRYCG	1 cut(s)	176
BslI	CCNNNNNNNGG	3 cut(s)	335, 372, 540
BsmAI	GTCTC	1 cut(s)	590
BsmBI	CGTCTC	1 cut(s)	590
BsnI	GGCC	1 cut(s)	894
Bsp143I	GATC	5 cut(s)	17, 89, 173, 231, 463
BspACI	CCGC	1 cut(s)	292
BspANI	GGCC	1 cut(s)	894
BspCNI	CTCAG	2 cut(s)	75, 230
BspHI	TCATGA	1 cut(s)	750
BspLI	GGNNCC	1 cut(s)	347
BspPI	GGATC	1 cut(s)	239
BspQI	GCTCTTC	1 cut(s)	84
BspTI	CTTAAG	1 cut(s)	202
BsrI	ACTGG	4 cut(s)	377, 430, 545, 934
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	5 cut(s)	17, 89, 173, 231, 463
BssSI	CACGAG	1 cut(s)	902
Bst2BI	CACGAG	1 cut(s)	902
Bst2UI	CCWGG	5 cut(s)	404, 480, 505, 614, 909
Bst4CI	ACNGT	6 cut(s)	259, 342, 397, 740, 797, 839
Bst6I	CTCTTC	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	202
BstDEI	CTNAG	4 cut(s)	83, 155, 217, 769
BstF5I	GGATG	2 cut(s)	764, 787
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	5 cut(s)	20, 92, 176, 234, 466
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	5 cut(s)	17, 89, 173, 231, 463
BstMCI	CGRYCG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	5 cut(s)	404, 480, 505, 614, 909
BstSCI	CCNGG	5 cut(s)	402, 478, 503, 612, 907
BstV1I	GCAGC	1 cut(s)	229
BstV2I	GAAGAC	2 cut(s)	543, 867
BstX2I	RGATCY	2 cut(s)	17, 463
BstYI	RGATCY	2 cut(s)	17, 463
Bsu36I	CCTNAGG	1 cut(s)	769
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	1 cut(s)	894
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	764, 787
BtsIMutI	CAGTG	2 cut(s)	347, 955
CciI	TCATGA	1 cut(s)	750
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	482
CseI	GACGC	2 cut(s)	47, 607
CsiI	ACCWGGT	1 cut(s)	478
Csp6I	GTAC	1 cut(s)	917
CviAII	CATG	4 cut(s)	263, 751, 778, 874
CviJI	RGCY	9 cut(s)	8, 44, 77, 167, 242, 533, 617, 894, 960
CviKI_1	RGCY	9 cut(s)	8, 44, 77, 167, 242, 533, 617, 894, 960
CviQI	GTAC	1 cut(s)	917
DdeI	CTNAG	4 cut(s)	83, 155, 217, 769
DpnI	GATC	5 cut(s)	19, 91, 175, 233, 465
DpnII	GATC	5 cut(s)	17, 89, 173, 231, 463
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco32I	GATATC	1 cut(s)	946
Eco47I	GGWCC	1 cut(s)	482
Eco57I	CTGAAG	2 cut(s)	542, 689
Eco81I	CCTNAGG	1 cut(s)	769
EcoRI	GAATTC	2 cut(s)	118, 492
EcoRII	CCWGG	5 cut(s)	402, 478, 503, 612, 907
EcoRV	GATATC	1 cut(s)	946
Esp3I	CGTCTC	1 cut(s)	590
FaeI	CATG	4 cut(s)	266, 754, 781, 877
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FatI	CATG	4 cut(s)	262, 750, 777, 873
Fnu4HI	GCNGC	2 cut(s)	243, 292
FokI	GGATG	2 cut(s)	751, 794
Fsp4HI	GCNGC	2 cut(s)	243, 292
FspBI	CTAG	1 cut(s)	93
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	2 cut(s)	243, 292
HaeIII	GGCC	1 cut(s)	894
HgaI	GACGC	2 cut(s)	47, 607
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	4 cut(s)	266, 754, 781, 877
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	3 cut(s)	85, 208, 215
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	400, 879
Hpy188I	TCNGA	6 cut(s)	84, 190, 379, 561, 688, 733
Hpy188III	TCNNGA	4 cut(s)	212, 485, 707, 751
Hpy8I	GTNNAC	2 cut(s)	400, 879
HpyAV	CCTTC	3 cut(s)	360, 860, 881
HpyCH4III	ACNGT	6 cut(s)	259, 342, 397, 740, 797, 839
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	5 cut(s)	14, 38, 128, 726, 747
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	4 cut(s)	83, 155, 217, 769
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	4 cut(s)	266, 754, 781, 877
HspAI	GCGC	1 cut(s)	245
Kzo9I	GATC	5 cut(s)	17, 89, 173, 231, 463
LguI	GCTCTTC	1 cut(s)	84
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	3 cut(s)	756, 879, 964
MabI	ACCWGGT	1 cut(s)	478
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	619, 925
MalI	GATC	5 cut(s)	19, 91, 175, 233, 465
MboI	GATC	5 cut(s)	17, 89, 173, 231, 463
MboII	GAAGA	7 cut(s)	12, 71, 488, 548, 797, 860, 872
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	2 cut(s)	17, 463
MlyI	GAGTC	2 cut(s)	94, 209
MnlI	CCTC	4 cut(s)	193, 666, 884, 974
MseI	TTAA	4 cut(s)	203, 369, 566, 997
MspA1I	CMGCKG	1 cut(s)	242
MspCI	CTTAAG	1 cut(s)	202
MspR9I	CCNGG	5 cut(s)	404, 480, 505, 614, 909
MunI	CAATTG	1 cut(s)	414
MvaI	CCWGG	5 cut(s)	404, 480, 505, 614, 909
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	5 cut(s)	17, 89, 173, 231, 463
NlaIII	CATG	4 cut(s)	266, 754, 781, 877
NlaIV	GGNNCC	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	619
PagI	TCATGA	1 cut(s)	750
PciSI	GCTCTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	244, 293
Ple19I	CGATCG	1 cut(s)	176
PleI	GAGTC	2 cut(s)	93, 209
PpsI	GAGTC	2 cut(s)	93, 209
Psp1406I	AACGTT	1 cut(s)	29
Psp6I	CCWGG	5 cut(s)	402, 478, 503, 612, 907
PspGI	CCWGG	5 cut(s)	402, 478, 503, 612, 907
PspN4I	GGNNCC	1 cut(s)	347
PspPI	GGNCC	1 cut(s)	482
PsuI	RGATCY	2 cut(s)	17, 463
PvuI	CGATCG	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	1 cut(s)	918
RsaNI	GTAC	1 cut(s)	917
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	4 cut(s)	203, 369, 566, 997
SatI	GCNGC	2 cut(s)	243, 292
Sau3AI	GATC	5 cut(s)	17, 89, 173, 231, 463
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	2 cut(s)	94, 209
ScrFI	CCNGG	5 cut(s)	404, 480, 505, 614, 909
SetI	ASST	8 cut(s)	32, 79, 169, 244, 331, 405, 481, 506
SexAI	ACCWGGT	1 cut(s)	478
SfaNI	GCATC	3 cut(s)	756, 879, 964
SinI	GGWCC	1 cut(s)	482
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
SsiI	CCGC	1 cut(s)	292
SspI	AATATT	2 cut(s)	809, 824
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	5 cut(s)	402, 478, 503, 612, 907
TaaI	ACNGT	6 cut(s)	259, 342, 397, 740, 797, 839
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	4 cut(s)	88, 172, 234, 962
TaqII	GACCGA	2 cut(s)	504, 575
TatI	WGTACW	1 cut(s)	916
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	4 cut(s)	203, 369, 566, 997
Tru9I	TTAA	4 cut(s)	203, 369, 566, 997
TscAI	CASTG	2 cut(s)	347, 955
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	9 cut(s)	125, 251, 339, 798, 804, 834, 861, 873, 900
TspRI	CASTG	2 cut(s)	347, 955
Vha464I	CTTAAG	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	482
XapI	RAATTY	2 cut(s)	118, 492
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.